Wall clock time and date at job start Mon Mar 30 2020 01:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80994 * 1 3 3 C 1.76197 * 100.00107 * 2 1 4 4 C 1.38238 * 119.80496 * 180.02562 * 3 2 1 5 5 C 1.38960 * 119.86729 * 180.02562 * 4 3 2 6 6 C 1.38309 * 119.47998 * 0.02562 * 5 4 3 7 7 C 1.39412 * 119.60900 * 359.72884 * 6 5 4 8 8 N 1.34337 * 119.94503 * 180.29839 * 7 6 5 9 9 C 1.32362 * 119.99627 * 355.52423 * 8 7 6 10 10 O 1.21719 * 120.00063 * 64.75831 * 9 8 7 11 11 C 1.50693 * 119.99806 * 244.76131 * 9 8 7 12 12 C 1.53000 * 109.47042 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47260 * 179.97438 * 12 11 9 14 14 H 1.08006 * 119.99940 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00280 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99766 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00150 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46961 * 90.00355 * 17 15 13 19 19 H 1.48507 * 109.47007 * 210.00135 * 17 15 13 20 20 H 1.48502 * 109.47086 * 330.00005 * 17 15 13 21 21 N 1.36185 * 119.80517 * 0.02562 * 3 2 1 22 22 H 0.97004 * 119.72943 * 359.97086 * 21 3 2 23 23 H 1.08995 * 109.47238 * 300.00332 * 1 2 3 24 24 H 1.09006 * 109.46946 * 60.00267 * 1 2 3 25 25 H 1.08998 * 109.47008 * 179.97438 * 1 2 3 26 26 H 1.08002 * 120.07040 * 0.02562 * 4 3 2 27 27 H 1.07996 * 120.25823 * 180.02562 * 5 4 3 28 28 H 1.08000 * 120.19273 * 180.02562 * 6 5 4 29 29 H 1.09002 * 109.47714 * 300.00058 * 11 9 8 30 30 H 1.09009 * 109.47111 * 60.00170 * 11 9 8 31 31 H 1.08996 * 109.47399 * 300.00042 * 12 11 9 32 32 H 1.09004 * 109.46570 * 60.00663 * 12 11 9 33 33 H 0.97006 * 120.00003 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 6 3.4166 2.2036 -0.0005 5 6 3.6594 3.5718 0.0000 6 6 2.5928 4.4523 0.0016 7 6 1.2900 3.9562 -0.0031 8 7 0.2491 4.8054 -0.0076 9 6 0.4584 6.1093 0.0818 10 8 1.0485 6.6934 -0.8082 11 6 -0.0338 6.8706 1.2855 12 6 0.3356 8.3482 1.1405 13 6 -0.1572 9.1097 2.3440 14 1 -0.6812 8.5915 3.1336 15 6 0.0607 10.4679 2.4372 16 7 0.6982 11.0991 1.4755 17 14 -0.5496 11.4117 3.9293 18 1 0.5057 11.4220 4.9740 19 1 -0.8698 12.8073 3.5353 20 1 -1.7698 10.7561 4.4646 21 7 1.0697 2.6070 0.0005 22 1 0.1609 2.2679 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 4.2424 1.5075 -0.0014 27 1 4.6729 3.9446 -0.0008 28 1 2.7683 5.5180 0.0016 29 1 -1.1169 6.7721 1.3599 30 1 0.4304 6.4670 2.1855 31 1 1.4186 8.4464 1.0665 32 1 -0.1284 8.7520 0.2406 33 1 0.8519 12.0546 1.5411 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360621592.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:58 Heat of formation + Delta-G solvation = 20.666653 kcal Electronic energy + Delta-G solvation = -17025.700013 eV Core-core repulsion = 14178.697851 eV Total energy + Delta-G solvation = -2847.002162 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.84772 -38.63476 -34.18926 -33.90797 -33.32573 -30.93207 -29.74345 -29.53860 -25.78063 -24.50122 -23.77086 -21.45105 -19.79485 -18.49535 -17.60103 -16.82431 -16.48317 -15.72896 -15.39031 -15.23913 -14.87137 -14.50305 -14.29948 -14.14205 -13.89233 -13.51564 -12.75405 -12.17207 -12.13616 -11.88625 -11.38481 -11.17892 -10.99366 -10.86036 -10.63712 -10.53451 -9.91488 -9.82993 -9.54330 -9.04837 -8.82232 -8.62546 -8.25509 -7.29221 -5.89356 -3.93128 0.33762 0.59001 1.24425 1.29117 2.48864 2.88901 3.37618 3.41194 3.43440 3.47094 4.31188 4.31653 4.45914 4.53387 4.64110 4.94952 5.00895 5.02433 5.16637 5.45105 5.66977 5.94313 6.11116 6.17059 6.36284 6.43023 6.51360 6.83625 7.15058 7.81507 7.94996 8.02053 8.15045 8.47990 8.80312 9.15046 9.69767 11.21635 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.037777 B = 0.003496 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.015441 B = 8007.520075 C = 8238.088968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 S -0.038 6.038 3 C 0.136 3.864 4 C -0.194 4.194 5 C -0.010 4.010 6 C -0.215 4.215 7 C 0.459 3.541 8 N -0.673 5.673 9 C 0.508 3.492 10 O -0.518 6.518 11 C -0.128 4.128 12 C 0.034 3.966 13 C -0.524 4.524 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.891 5.891 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 N -0.573 5.573 22 H 0.419 0.581 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.123 0.877 26 H 0.151 0.849 27 H 0.144 0.856 28 H 0.157 0.843 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.020 0.980 32 H 0.023 0.977 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.224 -27.099 -2.197 27.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.346 4.346 2 S 0.202 5.798 3 C -0.087 4.087 4 C -0.228 4.228 5 C -0.036 4.036 6 C -0.241 4.241 7 C 0.201 3.799 8 N -0.420 5.420 9 C 0.296 3.704 10 O -0.393 6.393 11 C -0.168 4.168 12 C -0.003 4.003 13 C -0.562 4.562 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.530 5.530 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 N -0.191 5.191 22 H 0.259 0.741 23 H 0.113 0.887 24 H 0.112 0.888 25 H 0.142 0.858 26 H 0.168 0.832 27 H 0.162 0.838 28 H 0.174 0.826 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.344 -27.474 -2.777 27.954 hybrid contribution -1.114 1.751 0.819 2.232 sum 3.230 -25.723 -1.958 25.998 Atomic orbital electron populations 1.23863 0.94977 1.09040 1.06759 1.86270 1.06344 0.95779 1.91430 1.22934 0.90980 0.94111 1.00631 1.20580 0.93092 0.96573 1.12535 1.21456 0.99895 0.91845 0.90392 1.22176 0.90536 1.02677 1.08728 1.18172 0.90649 0.82402 0.88640 1.67827 1.29958 1.05890 1.38282 1.21752 0.75505 0.85221 0.87892 1.90732 1.36195 1.73031 1.39313 1.21898 1.01930 0.99298 0.93658 1.18938 0.97415 0.86734 0.97245 1.21250 1.36770 0.93120 1.05067 0.92647 1.25032 0.95360 0.97797 0.96266 1.70006 1.41402 1.09206 1.32398 0.86591 0.79117 0.79224 0.83023 1.20699 1.21232 1.19887 1.41604 1.09200 1.04317 1.63978 0.74117 0.88654 0.88754 0.85845 0.83182 0.83839 0.82572 0.90080 0.90570 0.96116 0.95868 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.61 9.12 101.05 0.92 0.31 16 2 S -0.04 -0.21 22.70 -107.50 -2.44 -2.65 16 3 C 0.14 1.17 7.04 -15.62 -0.11 1.06 16 4 C -0.19 -1.65 9.78 -39.31 -0.38 -2.04 16 5 C -0.01 -0.10 10.11 -39.29 -0.40 -0.50 16 6 C -0.22 -3.19 9.06 -39.12 -0.35 -3.55 16 7 C 0.46 7.10 7.59 -155.43 -1.18 5.92 16 8 N -0.67 -12.99 10.52 -12.00 -0.13 -13.12 16 9 C 0.51 11.64 6.10 -12.05 -0.07 11.57 16 10 O -0.52 -13.43 15.38 5.17 0.08 -13.35 16 11 C -0.13 -3.02 5.71 -27.89 -0.16 -3.18 16 12 C 0.03 0.99 4.26 -27.88 -0.12 0.87 16 13 C -0.52 -15.68 9.11 -34.44 -0.31 -16.00 16 14 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -28.32 13.29 55.43 0.74 -27.58 16 17 Si 0.89 22.39 29.54 -169.99 -5.02 17.37 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 20 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 21 N -0.57 -6.16 5.26 -10.75 -0.06 -6.22 16 22 H 0.42 3.66 6.08 -40.82 -0.25 3.41 16 23 H 0.09 0.31 7.67 -51.92 -0.40 -0.09 16 24 H 0.09 0.32 7.67 -51.91 -0.40 -0.08 16 25 H 0.12 0.20 8.14 -51.92 -0.42 -0.22 16 26 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 27 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 28 H 0.16 2.76 6.20 -52.49 -0.33 2.44 16 29 H 0.08 1.85 8.14 -51.93 -0.42 1.42 16 30 H 0.08 1.68 8.14 -51.92 -0.42 1.25 16 31 H 0.02 0.63 8.10 -51.93 -0.42 0.21 16 32 H 0.02 0.73 8.10 -51.93 -0.42 0.30 16 33 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 301.76 15.07 4.55 4.55 Total: -1.00 -37.65 301.76 -8.41 -46.06 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -3.87 Total: -1.15 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -2.27 Total: -3.92 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.55 Total: -46.92 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.08 Total: -13.35 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 16 Polarization: -0.21 SS G_CDS: -2.44 Total: -2.65 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -37.65 -8.41 -46.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360621592.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.728 kcal (2) G-P(sol) polarization free energy of solvation -37.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds