Wall clock time and date at job start Mon Mar 30 2020 01:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80994 * 1 3 3 C 1.76197 * 100.00107 * 2 1 4 4 C 1.38238 * 119.80496 * 180.02562 * 3 2 1 5 5 C 1.38960 * 119.86729 * 180.02562 * 4 3 2 6 6 C 1.38309 * 119.47998 * 0.02562 * 5 4 3 7 7 C 1.39412 * 119.60900 * 359.72884 * 6 5 4 8 8 N 1.34337 * 119.94503 * 180.29839 * 7 6 5 9 9 C 1.32362 * 119.99627 * 355.52423 * 8 7 6 10 10 O 1.21719 * 120.00063 * 64.75831 * 9 8 7 11 11 C 1.50693 * 119.99806 * 244.76131 * 9 8 7 12 12 C 1.53000 * 109.47042 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47260 * 179.97438 * 12 11 9 14 14 H 1.08006 * 119.99940 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00280 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99766 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00150 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46961 * 90.00355 * 17 15 13 19 19 H 1.48507 * 109.47007 * 210.00135 * 17 15 13 20 20 H 1.48502 * 109.47086 * 330.00005 * 17 15 13 21 21 N 1.36185 * 119.80517 * 0.02562 * 3 2 1 22 22 H 0.97004 * 119.72943 * 359.97086 * 21 3 2 23 23 H 1.08995 * 109.47238 * 300.00332 * 1 2 3 24 24 H 1.09006 * 109.46946 * 60.00267 * 1 2 3 25 25 H 1.08998 * 109.47008 * 179.97438 * 1 2 3 26 26 H 1.08002 * 120.07040 * 0.02562 * 4 3 2 27 27 H 1.07996 * 120.25823 * 180.02562 * 5 4 3 28 28 H 1.08000 * 120.19273 * 180.02562 * 6 5 4 29 29 H 1.09002 * 109.47714 * 300.00058 * 11 9 8 30 30 H 1.09009 * 109.47111 * 60.00170 * 11 9 8 31 31 H 1.08996 * 109.47399 * 300.00042 * 12 11 9 32 32 H 1.09004 * 109.46570 * 60.00663 * 12 11 9 33 33 H 0.97006 * 120.00003 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 6 3.4166 2.2036 -0.0005 5 6 3.6594 3.5718 0.0000 6 6 2.5928 4.4523 0.0016 7 6 1.2900 3.9562 -0.0031 8 7 0.2491 4.8054 -0.0076 9 6 0.4584 6.1093 0.0818 10 8 1.0485 6.6934 -0.8082 11 6 -0.0338 6.8706 1.2855 12 6 0.3356 8.3482 1.1405 13 6 -0.1572 9.1097 2.3440 14 1 -0.6812 8.5915 3.1336 15 6 0.0607 10.4679 2.4372 16 7 0.6982 11.0991 1.4755 17 14 -0.5496 11.4117 3.9293 18 1 0.5057 11.4220 4.9740 19 1 -0.8698 12.8073 3.5353 20 1 -1.7698 10.7561 4.4646 21 7 1.0697 2.6070 0.0005 22 1 0.1609 2.2679 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 4.2424 1.5075 -0.0014 27 1 4.6729 3.9446 -0.0008 28 1 2.7683 5.5180 0.0016 29 1 -1.1169 6.7721 1.3599 30 1 0.4304 6.4670 2.1855 31 1 1.4186 8.4464 1.0665 32 1 -0.1284 8.7520 0.2406 33 1 0.8519 12.0546 1.5411 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360621592.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:57 Heat of formation + Delta-G solvation = -7.145033 kcal Electronic energy + Delta-G solvation = -17026.906018 eV Core-core repulsion = 14178.697851 eV Total energy + Delta-G solvation = -2848.208168 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.94718 -40.17621 -35.68383 -35.32182 -34.88933 -33.03419 -30.73041 -30.07908 -27.81251 -25.42899 -25.15767 -23.28865 -21.12727 -19.73639 -18.83707 -18.33172 -17.82793 -17.13570 -16.65975 -16.40763 -16.28275 -15.78616 -15.71541 -15.44678 -14.58380 -14.30621 -14.19160 -13.97292 -13.43018 -13.23641 -12.87202 -12.80201 -12.52634 -12.14017 -11.97400 -11.89320 -11.69212 -11.54649 -11.47637 -11.26314 -10.59692 -10.34142 -9.51479 -8.27712 -8.18466 -6.35566 -0.59508 -0.06617 0.21530 0.72966 1.33056 1.39258 1.43448 1.54751 1.71216 2.29330 2.41033 3.11227 3.36166 3.68278 3.81085 4.05167 4.10223 4.13242 4.21140 4.39152 4.49683 4.61506 4.75222 4.90156 5.07260 5.15635 5.21980 5.43269 5.45093 5.57392 5.77397 5.80161 6.14833 6.57162 6.81953 7.25187 7.34531 8.92645 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.037777 B = 0.003496 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.015441 B = 8007.520075 C = 8238.088968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 S 0.007 5.993 3 C 0.142 3.858 4 C -0.198 4.198 5 C 0.036 3.964 6 C -0.282 4.282 7 C 0.465 3.535 8 N -0.719 5.719 9 C 0.519 3.481 10 O -0.573 6.573 11 C -0.118 4.118 12 C 0.045 3.955 13 C -0.548 4.548 14 H 0.071 0.929 15 C -0.007 4.007 16 N -0.937 5.937 17 Si 0.980 3.020 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.258 1.258 21 N -0.554 5.554 22 H 0.430 0.570 23 H 0.100 0.900 24 H 0.098 0.902 25 H 0.149 0.851 26 H 0.192 0.808 27 H 0.174 0.826 28 H 0.115 0.885 29 H 0.089 0.911 30 H 0.092 0.908 31 H -0.016 1.016 32 H -0.020 1.020 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.574 -31.014 -0.544 31.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.357 4.357 2 S 0.248 5.752 3 C -0.082 4.082 4 C -0.230 4.230 5 C 0.010 3.990 6 C -0.310 4.310 7 C 0.213 3.787 8 N -0.471 5.471 9 C 0.308 3.692 10 O -0.453 6.453 11 C -0.158 4.158 12 C 0.007 3.993 13 C -0.585 4.585 14 H 0.089 0.911 15 C -0.204 4.204 16 N -0.576 5.576 17 Si 0.802 3.198 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.182 1.182 21 N -0.170 5.170 22 H 0.272 0.728 23 H 0.119 0.881 24 H 0.116 0.884 25 H 0.167 0.833 26 H 0.209 0.791 27 H 0.191 0.809 28 H 0.133 0.867 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.003 0.997 32 H -0.002 1.002 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.704 -31.527 -1.111 31.895 hybrid contribution -1.067 2.456 0.238 2.688 sum 3.638 -29.071 -0.873 29.310 Atomic orbital electron populations 1.24108 0.93388 1.10896 1.07285 1.86353 1.08074 0.91130 1.89644 1.23819 0.90761 0.96195 0.97396 1.21111 0.94244 0.96148 1.11533 1.21880 1.00026 0.92258 0.84828 1.21849 0.91869 1.01641 1.15616 1.18189 0.90132 0.83482 0.86882 1.67475 1.30218 1.04044 1.45328 1.21494 0.74290 0.86909 0.86513 1.90676 1.39383 1.74284 1.40937 1.21680 1.02505 0.96160 0.95494 1.18696 0.94621 0.90466 0.95494 1.21672 1.37260 0.94020 1.05571 0.91134 1.26195 0.95118 0.98986 1.00103 1.70188 1.42561 1.09804 1.35075 0.85243 0.79138 0.77224 0.78149 1.19252 1.20688 1.18187 1.41677 1.10789 1.02978 1.61512 0.72800 0.88111 0.88355 0.83317 0.79078 0.80864 0.86711 0.89281 0.88982 0.99712 1.00195 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.50 9.12 113.37 1.03 0.53 16 2 S 0.01 0.04 22.70 -56.49 -1.28 -1.24 16 3 C 0.14 1.94 7.04 84.02 0.59 2.53 16 4 C -0.20 -2.56 9.78 22.44 0.22 -2.34 16 5 C 0.04 0.69 10.11 22.46 0.23 0.91 16 6 C -0.28 -8.79 9.06 22.57 0.20 -8.59 16 7 C 0.46 14.76 7.59 133.31 1.01 15.78 16 8 N -0.72 -29.42 10.52 -311.42 -3.28 -32.70 16 9 C 0.52 25.88 6.10 88.03 0.54 26.42 16 10 O -0.57 -32.96 15.38 -4.41 -0.07 -33.03 16 11 C -0.12 -6.00 5.71 29.85 0.17 -5.83 16 12 C 0.04 2.80 4.26 29.85 0.13 2.93 16 13 C -0.55 -34.04 9.11 25.60 0.23 -33.80 16 14 H 0.07 4.07 7.74 -2.91 -0.02 4.04 16 15 C -0.01 -0.41 5.46 84.65 0.46 0.06 16 16 N -0.94 -62.10 13.29 21.45 0.28 -61.82 16 17 Si 0.98 46.58 29.54 68.60 2.03 48.61 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 20 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 21 N -0.55 -10.93 5.26 -187.92 -0.99 -11.91 16 22 H 0.43 6.62 6.08 -92.71 -0.56 6.06 16 23 H 0.10 0.27 7.67 -2.40 -0.02 0.25 16 24 H 0.10 0.29 7.67 -2.39 -0.02 0.27 16 25 H 0.15 -0.24 8.14 -2.40 -0.02 -0.26 16 26 H 0.19 1.02 8.06 -2.91 -0.02 0.99 16 27 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 28 H 0.11 4.59 6.20 -2.91 -0.02 4.57 16 29 H 0.09 4.28 8.14 -2.39 -0.02 4.26 16 30 H 0.09 4.27 8.14 -2.38 -0.02 4.25 16 31 H -0.02 -1.06 8.10 -2.39 -0.02 -1.08 16 32 H -0.02 -1.42 8.10 -2.39 -0.02 -1.44 16 33 H 0.26 16.26 8.31 -92.70 -0.77 15.49 16 Total: -1.00 -90.54 301.76 2.08 -88.46 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: 0.57 Total: 5.02 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: 4.82 Total: -1.39 kcal Atomic # 7 Polarization: -102.45 SS G_CDS: -3.98 Total: -106.43 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -0.07 Total: -33.03 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -1.28 Total: -1.24 kcal Total: -90.54 2.08 -88.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360621592.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.312 kcal (2) G-P(sol) polarization free energy of solvation -90.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds