Wall clock time and date at job start Mon Mar 30 2020 01:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76198 * 102.99933 * 2 1 4 4 C 1.38942 * 120.01218 * 179.97438 * 3 2 1 5 5 C 1.38049 * 119.99026 * 180.29590 * 4 3 2 6 6 C 1.38852 * 120.01128 * 359.45103 * 5 4 3 7 7 N 1.40200 * 119.99008 * 180.27422 * 6 5 4 8 8 C 1.34776 * 119.99899 * 213.56205 * 7 6 5 9 9 O 1.21599 * 120.00130 * 5.32227 * 8 7 6 10 10 N 1.34770 * 120.00161 * 185.31422 * 8 7 6 11 11 C 1.46506 * 120.00486 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.47226 * 180.02562 * 11 10 8 13 13 H 1.07997 * 120.00349 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99664 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00014 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99858 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47041 * 89.99585 * 16 14 12 18 18 H 1.48496 * 109.47182 * 209.99820 * 16 14 12 19 19 H 1.48502 * 109.46863 * 329.99779 * 16 14 12 20 20 C 1.38856 * 120.01719 * 0.55409 * 6 5 4 21 21 C 1.38044 * 120.00999 * 359.72181 * 20 6 5 22 22 H 1.08995 * 109.47796 * 300.00162 * 1 2 3 23 23 H 1.09003 * 109.46783 * 60.00373 * 1 2 3 24 24 H 1.08998 * 109.47209 * 179.97438 * 1 2 3 25 25 H 1.08003 * 120.00542 * 0.02590 * 4 3 2 26 26 H 1.08006 * 119.99597 * 179.72394 * 5 4 3 27 27 H 0.96998 * 119.99871 * 33.56407 * 7 6 5 28 28 H 0.97007 * 120.00196 * 0.02562 * 10 8 7 29 29 H 1.08997 * 109.46668 * 300.00311 * 11 10 8 30 30 H 1.09000 * 109.46560 * 60.00321 * 11 10 8 31 31 H 0.97007 * 119.99548 * 179.97438 * 15 14 12 32 32 H 1.08001 * 119.98679 * 179.70157 * 20 6 5 33 33 H 1.08005 * 120.00311 * 179.97438 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5389 2.1234 0.0005 5 6 3.8490 3.4686 0.0067 6 6 2.8333 4.4154 0.0009 7 7 3.1487 5.7814 0.0013 8 6 2.3494 6.6573 0.6419 9 8 1.4096 6.2541 1.2999 10 7 2.5917 7.9801 0.5534 11 6 1.7232 8.9323 1.2501 12 6 2.2064 10.3359 0.9906 13 1 3.0739 10.5022 0.3692 14 6 1.5416 11.4078 1.5474 15 7 0.4855 11.2053 2.3045 16 14 2.1409 13.1477 1.2262 17 1 1.4757 13.6841 0.0118 18 1 1.8120 14.0075 2.3914 19 1 3.6115 13.1345 1.0202 20 6 1.5054 4.0096 0.0004 21 6 1.1944 2.6646 0.0000 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 4.3291 1.3870 0.0005 26 1 4.8817 3.7847 0.0116 27 1 3.9421 6.0961 -0.4594 28 1 3.3412 8.3019 0.0283 29 1 0.7017 8.8267 0.8850 30 1 1.7490 8.7310 2.3211 31 1 0.0180 11.9595 2.6965 32 1 0.7158 4.7464 0.0008 33 1 0.1615 2.3491 0.0001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362904976.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:32 Heat of formation + Delta-G solvation = -6.950083 kcal Electronic energy + Delta-G solvation = -16864.894398 eV Core-core repulsion = 14016.694684 eV Total energy + Delta-G solvation = -2848.199714 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.20178 -38.34282 -34.66365 -34.14058 -32.40146 -31.21927 -29.73160 -28.89240 -27.03065 -23.44612 -22.74902 -21.97113 -20.27386 -18.28079 -17.86711 -17.27532 -16.06896 -15.32964 -15.15098 -14.86963 -14.57862 -14.26824 -14.04200 -13.97359 -13.55932 -13.17472 -12.89498 -12.80617 -12.08342 -12.02623 -12.01533 -11.33984 -11.00902 -10.94822 -10.52483 -10.40891 -10.32684 -9.54935 -9.44050 -8.95930 -8.82279 -8.75409 -7.96882 -7.20741 -6.20718 -4.27908 1.20731 1.40750 1.44074 2.29765 3.10947 3.21762 3.28511 3.31048 3.52122 3.95407 4.28238 4.76143 4.84844 4.86687 4.92208 4.93966 5.15686 5.29610 5.43094 5.52630 5.58609 5.97195 6.08172 6.30551 6.37851 6.58699 6.98853 7.10799 7.34692 7.45348 7.47496 7.77676 7.94389 8.63687 8.78855 9.13613 9.39232 10.89428 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.055199 B = 0.003152 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.133536 B = 8880.784807 C = 9287.621117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.133 6.133 3 C -0.112 4.112 4 C -0.078 4.078 5 C -0.139 4.139 6 C 0.182 3.818 7 N -0.696 5.696 8 C 0.690 3.310 9 O -0.582 6.582 10 N -0.721 5.721 11 C 0.266 3.734 12 C -0.544 4.544 13 H 0.063 0.937 14 C 0.064 3.936 15 N -0.885 5.885 16 Si 0.905 3.095 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.273 1.273 20 C -0.103 4.103 21 C -0.110 4.110 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.105 0.895 25 H 0.128 0.872 26 H 0.129 0.871 27 H 0.404 0.596 28 H 0.389 0.611 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.266 0.734 32 H 0.143 0.857 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.737 -18.475 -7.022 20.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.107 5.893 3 C -0.225 4.225 4 C -0.102 4.102 5 C -0.162 4.162 6 C 0.084 3.916 7 N -0.344 5.344 8 C 0.390 3.610 9 O -0.460 6.460 10 N -0.372 5.372 11 C 0.145 3.855 12 C -0.583 4.583 13 H 0.081 0.919 14 C -0.140 4.140 15 N -0.522 5.522 16 Si 0.732 3.268 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.125 4.125 21 C -0.134 4.134 22 H 0.104 0.896 23 H 0.102 0.898 24 H 0.123 0.877 25 H 0.146 0.854 26 H 0.147 0.853 27 H 0.239 0.761 28 H 0.221 0.779 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.160 0.840 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.319 -19.627 -6.268 21.051 hybrid contribution 0.152 2.476 -0.513 2.533 sum 4.471 -17.151 -6.780 18.977 Atomic orbital electron populations 1.23639 0.94745 1.06806 1.05852 1.85247 1.06566 1.04021 1.93456 1.21502 0.96642 0.95904 1.08468 1.20431 0.94154 0.95158 1.00466 1.20773 0.98483 0.91948 1.04969 1.17595 0.93385 0.82560 0.98081 1.42921 1.29565 1.04780 1.57111 1.16175 0.82721 0.81860 0.80268 1.90900 1.31755 1.78048 1.45304 1.45792 1.34134 1.03518 1.53805 1.19062 0.89228 0.84974 0.92254 1.21200 1.14214 0.90380 1.32485 0.91863 1.24945 0.94739 0.99645 0.94649 1.69976 1.18680 1.31813 1.31703 0.86393 0.79051 0.83411 0.77920 1.20435 1.20963 1.19749 1.21186 0.96061 0.95722 0.99575 1.21023 0.98123 0.92509 1.01699 0.89650 0.89758 0.87655 0.85430 0.85279 0.76123 0.77861 0.95480 0.95482 0.92376 0.83959 0.85810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.15 101.05 0.92 -0.18 16 2 S -0.13 -1.40 22.56 -107.50 -2.43 -3.83 16 3 C -0.11 -1.41 6.11 -39.06 -0.24 -1.65 16 4 C -0.08 -0.93 9.78 -39.39 -0.39 -1.31 16 5 C -0.14 -1.69 9.95 -39.42 -0.39 -2.09 16 6 C 0.18 2.71 6.29 -83.57 -0.53 2.19 16 7 N -0.70 -10.48 5.36 -14.17 -0.08 -10.55 16 8 C 0.69 13.84 8.30 -86.92 -0.72 13.12 16 9 O -0.58 -14.00 14.03 5.28 0.07 -13.93 16 10 N -0.72 -14.87 5.55 -66.41 -0.37 -15.23 16 11 C 0.27 6.93 5.43 -5.19 -0.03 6.90 16 12 C -0.54 -14.52 9.28 -34.44 -0.32 -14.84 16 13 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 14 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 15 N -0.88 -25.77 13.29 55.43 0.74 -25.03 16 16 Si 0.91 20.58 29.54 -169.99 -5.02 15.55 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 20 C -0.10 -1.63 8.65 -39.42 -0.34 -1.97 16 21 C -0.11 -1.47 9.36 -39.39 -0.37 -1.84 16 22 H 0.08 0.67 7.74 -51.93 -0.40 0.26 16 23 H 0.08 0.61 7.75 -51.92 -0.40 0.21 16 24 H 0.10 0.62 8.14 -51.92 -0.42 0.19 16 25 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 26 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 27 H 0.40 4.56 8.84 -40.82 -0.36 4.20 16 28 H 0.39 6.73 8.34 -40.82 -0.34 6.39 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.14 2.56 6.41 -52.49 -0.34 2.22 16 33 H 0.12 1.42 5.87 -52.48 -0.31 1.11 16 LS Contribution 300.78 15.07 4.53 4.53 Total: -1.00 -32.10 300.78 -8.84 -40.94 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -3.80 Total: 7.55 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -2.49 Total: -0.01 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 0.29 Total: -50.82 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.07 Total: -13.93 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: -1.40 SS G_CDS: -2.43 Total: -3.83 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.10 -8.84 -40.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362904976.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.993 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds