Wall clock time and date at job start Mon Mar 30 2020 00:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38252 * 120.74286 * 2 1 4 4 N 1.32415 * 119.27453 * 180.02562 * 3 2 1 5 5 C 1.32558 * 120.87950 * 0.02562 * 4 3 2 6 6 S 1.76197 * 119.19195 * 179.97438 * 5 4 3 7 7 C 1.80996 * 100.00094 * 359.97438 * 6 5 4 8 8 C 1.53002 * 109.47383 * 184.27142 * 7 6 5 9 9 C 1.50705 * 115.55962 * 40.04819 * 8 7 6 10 10 H 1.07993 * 120.00084 * 270.76261 * 9 8 7 11 11 C 1.37880 * 119.99815 * 90.75943 * 9 8 7 12 12 N 1.31515 * 120.00180 * 174.05338 * 11 9 8 13 13 Si 1.86806 * 120.00012 * 354.06093 * 11 9 8 14 14 H 1.48497 * 109.47118 * 92.58411 * 13 11 9 15 15 H 1.48503 * 109.46930 * 212.58575 * 13 11 9 16 16 H 1.48498 * 109.46790 * 332.58023 * 13 11 9 17 17 C 1.53004 * 117.50212 * 185.73686 * 8 7 6 18 18 C 1.53003 * 60.02851 * 107.48342 * 17 8 7 19 19 N 1.32517 * 121.61223 * 0.24908 * 5 4 3 20 20 C 1.32743 * 120.64114 * 359.48893 * 19 5 4 21 21 O 1.35511 * 120.46607 * 180.27420 * 20 19 5 22 22 H 1.08996 * 109.47166 * 90.00199 * 1 2 3 23 23 H 1.09001 * 109.47705 * 210.00099 * 1 2 3 24 24 H 1.09001 * 109.47196 * 329.99988 * 1 2 3 25 25 H 1.08001 * 120.36540 * 0.02562 * 3 2 1 26 26 H 1.09001 * 109.47215 * 64.27244 * 7 6 5 27 27 H 1.09003 * 109.47368 * 304.27209 * 7 6 5 28 28 H 0.96997 * 119.99998 * 180.02562 * 12 11 9 29 29 H 1.09000 * 117.49726 * 214.98251 * 17 8 7 30 30 H 1.09000 * 117.49735 * 359.97438 * 17 8 7 31 31 H 1.08996 * 117.50238 * 107.50778 * 18 17 8 32 32 H 1.09006 * 117.49673 * 252.52149 * 18 17 8 33 33 H 0.96697 * 114.00152 * 270.23267 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2137 1.1882 0.0000 4 7 3.5374 1.1543 -0.0005 5 6 4.1884 -0.0004 -0.0015 6 16 5.9504 0.0063 -0.0029 7 6 6.2579 1.7900 -0.0031 8 6 7.7620 2.0482 -0.1117 9 6 8.5106 1.1433 -1.0561 10 1 8.9220 0.2111 -0.6984 11 6 8.6701 1.5057 -2.3769 12 7 9.4211 0.7762 -3.1728 13 14 7.8197 3.0329 -3.0357 14 1 8.7345 4.1971 -2.9213 15 1 7.4609 2.8235 -4.4614 16 1 6.5877 3.2920 -2.2481 17 6 8.2406 3.4966 0.0072 18 6 8.4924 2.5121 1.1510 19 7 3.5464 -1.1597 -0.0070 20 6 2.2196 -1.1983 -0.0014 21 8 1.5667 -2.3858 -0.0015 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6919 2.1338 0.0004 26 1 5.8807 2.2238 0.9230 27 1 5.7487 2.2464 -0.8519 28 1 9.5336 1.0313 -4.1018 29 1 9.0968 3.7950 -0.5978 30 1 7.4838 4.2656 0.1623 31 1 9.5143 2.1629 1.2987 32 1 7.9011 2.6332 2.0586 33 1 1.3766 -2.7301 -0.8848 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380822934.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:13:27 Heat of formation + Delta-G solvation = 29.709241 kcal Electronic energy + Delta-G solvation = -17453.855517 eV Core-core repulsion = 14607.245471 eV Total energy + Delta-G solvation = -2846.610046 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.90850 -37.61103 -37.03048 -33.74210 -32.59572 -32.14371 -28.29543 -27.50784 -25.44767 -24.14285 -22.98909 -21.68158 -19.59303 -19.06422 -17.97398 -16.96193 -16.28612 -15.48069 -14.97564 -14.69971 -14.28082 -14.03277 -13.82107 -13.62816 -13.34716 -12.98039 -12.61509 -12.54023 -12.19556 -12.11580 -11.18577 -10.85021 -10.58650 -10.56320 -10.42761 -10.24597 -9.94214 -9.68347 -9.53031 -9.14254 -9.07242 -8.64161 -8.45118 -7.07226 -6.16508 -4.19450 0.81395 1.09877 1.79826 2.92477 3.26167 3.36072 3.39964 3.41712 3.75372 4.38124 4.44542 4.73158 4.82268 4.84781 4.85346 5.12086 5.34640 5.40013 5.64654 5.68575 5.81005 5.87805 6.07656 6.14566 6.20614 6.42422 6.43987 6.67148 6.91677 6.97174 7.07740 7.29761 7.65082 8.03736 8.41035 8.87089 9.46370 10.94592 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.026347 B = 0.005505 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.495276 B = 5085.307271 C = 5150.071942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.240 4.240 3 C 0.174 3.826 4 N -0.533 5.533 5 C 0.298 3.702 6 S 0.084 5.916 7 C -0.076 4.076 8 C 0.004 3.996 9 C -0.489 4.489 10 H 0.084 0.916 11 C 0.087 3.913 12 N -0.887 5.887 13 Si 0.874 3.126 14 H -0.277 1.277 15 H -0.293 1.293 16 H -0.257 1.257 17 C -0.190 4.190 18 C -0.176 4.176 19 N -0.526 5.526 20 C 0.371 3.629 21 O -0.476 6.476 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.168 0.832 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.266 0.734 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.161 0.945 4.967 16.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.252 4.252 3 C 0.005 3.995 4 N -0.252 5.252 5 C -0.074 4.074 6 S 0.326 5.674 7 C -0.226 4.226 8 C 0.002 3.998 9 C -0.528 4.528 10 H 0.102 0.898 11 C -0.117 4.117 12 N -0.523 5.523 13 Si 0.702 3.298 14 H -0.203 1.203 15 H -0.220 1.220 16 H -0.181 1.181 17 C -0.229 4.229 18 C -0.213 4.213 19 N -0.253 5.253 20 C 0.178 3.822 21 O -0.283 6.283 22 H 0.087 0.913 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.185 0.815 26 H 0.090 0.910 27 H 0.109 0.891 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -14.189 -0.011 5.373 15.172 hybrid contribution -2.375 1.750 -1.028 3.124 sum -16.564 1.739 4.345 17.213 Atomic orbital electron populations 1.20472 0.89163 1.03293 1.02276 1.21509 0.99048 0.94092 1.10510 1.23042 0.89529 0.97631 0.89316 1.68965 1.09774 1.28739 1.17735 1.26093 1.03995 0.84603 0.92734 1.86730 0.84357 1.10436 1.85863 1.23594 1.01085 0.93428 1.04450 1.19152 0.88637 0.94080 0.97959 1.20193 1.34309 1.05724 0.92563 0.89767 1.24929 0.93780 0.96420 0.96588 1.69890 1.36956 1.39214 1.06268 0.86937 0.81323 0.83652 0.77899 1.20329 1.21984 1.18099 1.22980 1.03084 0.93273 1.03579 1.22934 1.01758 1.04887 0.91748 1.68084 1.09194 1.30028 1.17971 1.19277 0.86849 0.85233 0.90793 1.84660 1.74790 1.34772 1.34088 0.91328 0.90866 0.91297 0.81527 0.90963 0.89141 0.92406 0.89064 0.90749 0.89158 0.90748 0.73655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.77 9.85 36.01 0.35 -0.42 16 2 C -0.24 -3.00 5.93 -104.18 -0.62 -3.62 16 3 C 0.17 2.36 10.99 -17.29 -0.19 2.17 16 4 N -0.53 -9.38 9.07 -13.51 -0.12 -9.51 16 5 C 0.30 5.76 7.85 -90.87 -0.71 5.04 16 6 S 0.08 1.77 21.10 -107.50 -2.27 -0.49 16 7 C -0.08 -1.59 4.81 37.16 0.18 -1.41 16 8 C 0.00 0.09 1.11 -155.62 -0.17 -0.08 16 9 C -0.49 -13.05 8.14 -34.44 -0.28 -13.33 16 10 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 11 C 0.09 2.41 5.46 -17.82 -0.10 2.31 16 12 N -0.89 -26.25 13.96 55.43 0.77 -25.48 16 13 Si 0.87 21.17 25.06 -169.99 -4.26 16.91 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 15 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 16 H -0.26 -5.92 5.40 56.52 0.31 -5.61 16 17 C -0.19 -3.90 7.63 -26.73 -0.20 -4.10 16 18 C -0.18 -3.47 9.89 -26.69 -0.26 -3.73 16 19 N -0.53 -9.72 10.42 -13.50 -0.14 -9.86 16 20 C 0.37 5.49 7.80 -16.72 -0.13 5.36 16 21 O -0.48 -5.62 12.74 -18.23 -0.23 -5.85 16 22 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.07 0.59 7.62 -51.93 -0.40 0.19 16 24 H 0.07 0.47 8.10 -51.93 -0.42 0.04 16 25 H 0.17 1.62 8.06 -52.49 -0.42 1.19 16 26 H 0.07 1.37 7.95 -51.92 -0.41 0.96 16 27 H 0.09 1.98 6.22 -51.91 -0.32 1.65 16 28 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.09 1.97 7.15 -51.93 -0.37 1.60 16 30 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.09 1.80 8.14 -51.93 -0.42 1.37 16 32 H 0.07 1.29 8.09 -51.93 -0.42 0.87 16 33 H 0.40 2.71 9.06 45.56 0.41 3.13 16 LS Contribution 294.47 15.07 4.44 4.44 Total: -1.00 -31.85 294.47 -7.22 -39.08 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -3.28 Total: 2.57 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -2.14 Total: -11.81 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.51 Total: -44.84 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.23 Total: -5.85 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.26 Total: 16.91 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.27 Total: -0.49 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.85 -7.22 -39.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380822934.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.787 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds