Wall clock time and date at job start Mon Mar 30 2020 01:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 120.00166 * 2 1 4 4 H 1.48494 * 109.47406 * 271.38172 * 3 2 1 5 5 H 1.48503 * 109.46840 * 31.38239 * 3 2 1 6 6 H 1.48494 * 109.46821 * 151.37735 * 3 2 1 7 7 C 1.37876 * 119.99552 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00140 * 358.76315 * 7 2 1 9 9 C 1.50699 * 119.99634 * 178.76525 * 7 2 1 10 10 C 1.53000 * 115.54936 * 86.79934 * 9 7 2 11 11 N 1.46506 * 109.47160 * 64.84254 * 10 9 7 12 12 C 1.34779 * 119.99939 * 185.07825 * 11 10 9 13 13 O 1.21588 * 119.99927 * 355.17666 * 12 11 10 14 14 N 1.34776 * 119.99490 * 175.18512 * 12 11 10 15 15 C 1.46501 * 119.99287 * 185.04752 * 14 12 11 16 16 C 1.53003 * 109.46570 * 179.97438 * 15 14 12 17 17 F 1.39899 * 109.47382 * 60.00440 * 16 15 14 18 18 F 1.39904 * 109.47181 * 179.97438 * 16 15 14 19 19 F 1.39894 * 109.47463 * 299.99858 * 16 15 14 20 20 C 1.52996 * 117.50074 * 232.46919 * 9 7 2 21 21 C 1.52998 * 117.50177 * 301.12907 * 9 7 2 22 22 H 0.97005 * 119.99719 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47310 * 304.84400 * 10 9 7 24 24 H 1.09002 * 109.47315 * 184.83987 * 10 9 7 25 25 H 0.96999 * 119.99630 * 5.34320 * 11 10 9 26 26 H 0.96996 * 120.00680 * 5.04580 * 14 12 11 27 27 H 1.08996 * 109.47285 * 299.99275 * 15 14 12 28 28 H 1.09000 * 109.47263 * 60.00342 * 15 14 12 29 29 H 1.09004 * 117.50109 * 215.00568 * 20 9 7 30 30 H 1.08996 * 117.49781 * 0.02578 * 20 9 7 31 31 H 1.09002 * 117.49646 * 359.97438 * 21 9 7 32 32 H 1.09004 * 117.49998 * 144.96923 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4676 2.0633 -1.3996 5 1 1.4616 2.6440 0.7291 6 1 3.5610 1.4318 0.6707 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 0.0192 9 6 3.5112 -1.1943 -0.0287 10 6 4.1967 -1.1030 1.3362 11 7 3.8919 -2.3046 2.1170 12 6 4.3061 -2.4001 3.3960 13 8 5.0068 -1.5294 3.8748 14 7 3.9436 -3.4610 4.1442 15 6 4.3001 -3.5117 5.5642 16 6 3.7731 -4.8112 6.1761 17 9 4.3427 -5.9035 5.5131 18 9 4.1140 -4.8601 7.5321 19 9 2.3813 -4.8587 6.0427 20 6 4.1975 -2.0321 -1.1093 21 6 4.1958 -0.5048 -1.2105 22 1 -0.4850 0.8401 0.0004 23 1 3.8336 -0.2230 1.8670 24 1 5.2749 -1.0242 1.1967 25 1 3.3954 -3.0330 1.7123 26 1 3.4468 -4.1908 3.7425 27 1 5.3845 -3.4744 5.6682 28 1 3.8560 -2.6609 6.0810 29 1 5.1374 -2.5184 -0.8479 30 1 3.5593 -2.5829 -1.8001 31 1 3.5564 -0.0514 -1.9679 32 1 5.1344 0.0142 -1.0156 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404074645.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:01 Heat of formation + Delta-G solvation = -182.521868 kcal Electronic energy + Delta-G solvation = -20316.893118 eV Core-core repulsion = 16476.470429 eV Total energy + Delta-G solvation = -3840.422689 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.098 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -51.19870 -48.70855 -48.67531 -41.07839 -38.84941 -36.10611 -35.04621 -34.18935 -30.54502 -28.21027 -26.86248 -24.25542 -23.32241 -22.07925 -21.09400 -19.87718 -19.65712 -19.45060 -18.64776 -17.91145 -17.00485 -16.96502 -16.53988 -15.75080 -15.62354 -15.56995 -15.17364 -15.10179 -14.97057 -14.82287 -14.80827 -14.71420 -14.58555 -14.07628 -13.64203 -13.07137 -12.95317 -12.61713 -12.16497 -11.95590 -11.62783 -11.45716 -10.96697 -10.64141 -10.53178 -10.34545 -9.75194 -8.27890 -6.34113 1.28555 1.36262 1.42375 1.52126 1.73076 2.09974 2.38545 2.63770 2.93159 2.97032 3.08198 3.24053 3.48204 4.06065 4.16492 4.29426 4.39428 4.44621 4.56996 4.81102 4.90638 5.10262 5.13485 5.33359 5.51852 5.57849 5.72179 5.87856 6.30432 6.74387 7.01398 7.36491 7.49681 8.86704 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.027634 B = 0.004654 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.985702 B = 6015.002139 C = 6255.273554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.025 3.975 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.305 1.305 6 H -0.238 1.238 7 C -0.476 4.476 8 H 0.045 0.955 9 C -0.042 4.042 10 C 0.184 3.816 11 N -0.714 5.714 12 C 0.708 3.292 13 O -0.631 6.631 14 N -0.739 5.739 15 C 0.100 3.900 16 C 0.460 3.540 17 F -0.180 7.180 18 F -0.173 7.173 19 F -0.183 7.183 20 C -0.151 4.151 21 C -0.191 4.191 22 H 0.263 0.737 23 H 0.037 0.963 24 H 0.059 0.941 25 H 0.408 0.592 26 H 0.413 0.587 27 H 0.123 0.877 28 H 0.114 0.886 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.205 -9.444 9.260 16.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.173 4.173 3 Si 0.755 3.245 4 H -0.193 1.193 5 H -0.232 1.232 6 H -0.161 1.161 7 C -0.513 4.513 8 H 0.063 0.937 9 C -0.044 4.044 10 C 0.059 3.941 11 N -0.367 5.367 12 C 0.408 3.592 13 O -0.512 6.512 14 N -0.398 5.398 15 C -0.026 4.026 16 C 0.406 3.594 17 F -0.161 7.161 18 F -0.154 7.154 19 F -0.165 7.165 20 C -0.188 4.188 21 C -0.229 4.229 22 H 0.072 0.928 23 H 0.055 0.945 24 H 0.077 0.923 25 H 0.244 0.756 26 H 0.250 0.750 27 H 0.141 0.859 28 H 0.132 0.868 29 H 0.123 0.877 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 10.646 -8.556 9.702 16.754 hybrid contribution -0.938 0.081 -0.293 0.986 sum 9.709 -8.476 9.409 15.957 Atomic orbital electron populations 1.70024 1.08131 1.27819 1.52577 1.25714 0.95077 1.02509 0.93999 0.86044 0.80236 0.79402 0.78866 1.19301 1.23222 1.16113 1.20352 0.88564 0.92817 1.49612 0.93715 1.19476 0.92969 1.04482 0.87435 1.20799 0.97201 0.85618 0.90484 1.44867 1.59453 1.21804 1.10601 1.15845 0.80064 0.81839 0.81428 1.90879 1.44059 1.42897 1.73393 1.44531 1.62814 1.23354 1.09115 1.22327 1.04554 0.93853 0.81912 1.20379 0.75659 0.86595 0.76813 1.93225 1.84557 1.57856 1.80469 1.93223 1.92027 1.96753 1.33433 1.93237 1.30840 1.96873 1.95519 1.22878 1.01557 0.92329 1.02028 1.23021 1.01846 0.96422 1.01607 0.92770 0.94457 0.92295 0.75606 0.74991 0.85872 0.86763 0.87657 0.89711 0.90447 0.88138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.89 13.96 21.45 0.30 -56.59 16 2 C 0.02 1.37 5.47 84.65 0.46 1.84 16 3 Si 0.93 43.28 24.88 68.60 1.71 44.98 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 6 H -0.24 -10.29 5.74 99.48 0.57 -9.72 16 7 C -0.48 -24.54 9.29 25.60 0.24 -24.30 16 8 H 0.04 2.54 8.06 -2.91 -0.02 2.52 16 9 C -0.04 -1.73 0.81 -52.93 -0.04 -1.77 16 10 C 0.18 7.13 5.12 86.38 0.44 7.57 16 11 N -0.71 -24.33 5.46 -478.52 -2.61 -26.94 16 12 C 0.71 23.36 8.55 179.05 1.53 24.89 16 13 O -0.63 -25.09 16.36 -3.99 -0.07 -25.15 16 14 N -0.74 -17.65 5.42 -478.53 -2.59 -20.25 16 15 C 0.10 1.91 5.65 86.38 0.49 2.40 16 16 C 0.46 8.10 3.11 71.98 0.22 8.33 16 17 F -0.18 -3.28 17.18 44.97 0.77 -2.51 16 18 F -0.17 -3.04 17.32 44.97 0.78 -2.27 16 19 F -0.18 -3.74 17.18 44.97 0.77 -2.96 16 20 C -0.15 -5.08 9.96 30.62 0.30 -4.78 16 21 C -0.19 -7.02 7.60 30.62 0.23 -6.79 16 22 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 23 H 0.04 1.66 6.66 -2.39 -0.02 1.64 16 24 H 0.06 2.11 8.09 -2.39 -0.02 2.09 16 25 H 0.41 12.66 8.47 -92.71 -0.79 11.87 16 26 H 0.41 8.24 8.38 -92.71 -0.78 7.46 16 27 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.11 2.93 8.14 -2.38 -0.02 2.91 16 30 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 31 H 0.08 3.06 7.27 -2.39 -0.02 3.05 16 32 H 0.10 3.21 8.14 -2.38 -0.02 3.19 16 Total: -1.00 -65.36 289.21 2.42 -62.94 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -0.52 Total: 21.36 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 3.88 Total: 7.38 kcal Atomic # 7 Polarization: -98.87 SS G_CDS: -4.91 Total: -103.77 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.07 Total: -25.15 kcal Atomic # 9 Polarization: -10.06 SS G_CDS: 2.32 Total: -7.74 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.71 Total: 44.98 kcal Total: -65.36 2.42 -62.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404074645.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.584 kcal (2) G-P(sol) polarization free energy of solvation -65.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds