Wall clock time and date at job start Mon Mar 30 2020 00:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 S 1.81396 * 109.47254 * 239.99784 * 2 1 3 5 5 C 1.76208 * 102.99695 * 65.00165 * 4 2 1 6 6 C 1.39196 * 119.70538 * 179.72223 * 5 4 2 7 7 C 1.38276 * 119.09111 * 179.77249 * 6 5 4 8 8 C 1.38913 * 118.51060 * 0.49621 * 7 6 5 9 9 C 1.38033 * 119.33781 * 359.74708 * 8 7 6 10 10 N 1.31963 * 120.86331 * 0.02562 * 9 8 7 11 11 C 1.50699 * 109.46866 * 119.99952 * 2 1 3 12 12 O 1.21280 * 119.99870 * 99.99795 * 11 2 1 13 13 N 1.34787 * 120.00036 * 280.00204 * 11 2 1 14 14 C 1.46500 * 120.00020 * 180.02562 * 13 11 2 15 15 C 1.50698 * 109.47107 * 179.97438 * 14 13 11 16 16 H 1.07998 * 119.99660 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99991 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00013 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00147 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47234 * 59.99952 * 19 17 15 21 21 H 1.48494 * 109.47421 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47081 * 300.00299 * 19 17 15 23 23 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 24 24 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.07995 * 120.45809 * 0.02711 * 6 5 4 27 27 H 1.08003 * 120.74761 * 180.24826 * 7 6 5 28 28 H 1.08003 * 120.33414 * 179.72839 * 8 7 6 29 29 H 1.08003 * 119.56897 * 179.97438 * 9 8 7 30 30 H 0.96999 * 119.99391 * 359.97438 * 13 11 2 31 31 H 1.09004 * 109.46910 * 299.99699 * 14 13 11 32 32 H 1.08998 * 109.47114 * 59.99637 * 14 13 11 33 33 H 0.96996 * 119.99988 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1348 -0.8552 -1.4811 5 6 1.5828 0.1847 -2.7922 6 6 1.8728 -0.1549 -4.1106 7 6 1.4294 0.6677 -5.1298 8 6 0.7170 1.8124 -4.7955 9 6 0.4695 2.0910 -3.4664 10 7 0.9008 1.2856 -2.5142 11 6 2.0323 -0.7104 1.2305 12 8 2.4064 -1.8617 1.1558 13 7 2.0658 -0.0663 2.4140 14 6 2.5546 -0.7568 3.6101 15 6 2.4898 0.1772 4.7910 16 1 2.1218 1.1845 4.6632 17 6 2.9004 -0.2542 6.0345 18 7 3.3490 -1.4807 6.1899 19 14 2.8195 0.9033 7.4984 20 1 1.4140 1.3319 7.7134 21 1 3.3150 0.2035 8.7107 22 1 3.6655 2.0949 7.2346 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 2.4328 -1.0507 -4.3347 27 1 1.6358 0.4277 -6.1624 28 1 0.3605 2.4780 -5.5678 29 1 -0.0837 2.9802 -3.2023 30 1 1.7669 0.8545 2.4736 31 1 1.9338 -1.6316 3.8038 32 1 3.5862 -1.0711 3.4521 33 1 3.6375 -1.7843 7.0648 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427646797.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:53 Heat of formation + Delta-G solvation = -8.963919 kcal Electronic energy + Delta-G solvation = -16897.343380 eV Core-core repulsion = 14049.056339 eV Total energy + Delta-G solvation = -2848.287040 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.06030 -38.95103 -34.25873 -33.33798 -32.53470 -31.99703 -31.38470 -27.31570 -24.47485 -23.89392 -23.71883 -22.33189 -19.83427 -18.42911 -17.00011 -16.48305 -16.33115 -15.90251 -15.44359 -14.82948 -14.70176 -14.37323 -14.15511 -13.87295 -13.44951 -12.91150 -12.76291 -12.39495 -12.01969 -11.79127 -11.66211 -11.57176 -11.00940 -10.87888 -10.34712 -10.23662 -10.14555 -9.89484 -9.69209 -9.43822 -9.16255 -8.76119 -7.96254 -7.54506 -6.17996 -4.25413 0.81086 1.04275 1.38621 2.23126 3.23972 3.25143 3.29777 3.31274 3.51554 3.97864 4.33581 4.35948 4.60220 4.87187 4.90696 5.04416 5.06929 5.16299 5.18201 5.40701 5.47555 5.75016 5.77244 5.91590 5.94167 6.22372 6.40320 7.24810 7.33950 7.48010 7.58388 7.61903 7.93935 8.52598 8.71878 8.98355 9.40871 10.92148 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.043920 B = 0.003604 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.363082 B = 7768.248616 C = 8182.026843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.100 4.100 3 H 0.114 0.886 4 S 0.001 5.999 5 C 0.111 3.889 6 C -0.155 4.155 7 C -0.059 4.059 8 C -0.189 4.189 9 C 0.114 3.886 10 N -0.490 5.490 11 C 0.517 3.483 12 O -0.541 6.541 13 N -0.702 5.702 14 C 0.250 3.750 15 C -0.545 4.545 16 H 0.063 0.937 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.905 3.095 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.065 0.935 26 H 0.139 0.861 27 H 0.137 0.863 28 H 0.134 0.866 29 H 0.157 0.843 30 H 0.393 0.607 31 H 0.029 0.971 32 H 0.029 0.971 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.965 7.235 -20.973 22.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.232 4.232 3 H 0.132 0.868 4 S 0.244 5.756 5 C -0.137 4.137 6 C -0.181 4.181 7 C -0.086 4.086 8 C -0.213 4.213 9 C -0.047 4.047 10 N -0.203 5.203 11 C 0.299 3.701 12 O -0.420 6.420 13 N -0.350 5.350 14 C 0.130 3.870 15 C -0.584 4.584 16 H 0.081 0.919 17 C -0.140 4.140 18 N -0.522 5.522 19 Si 0.732 3.268 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.200 1.200 23 H 0.088 0.912 24 H 0.100 0.900 25 H 0.084 0.916 26 H 0.157 0.843 27 H 0.154 0.846 28 H 0.151 0.849 29 H 0.174 0.826 30 H 0.225 0.775 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.124 5.385 -19.858 21.203 hybrid contribution -0.693 2.123 0.024 2.233 sum -5.817 7.508 -19.834 21.991 Atomic orbital electron populations 1.21957 0.90512 1.03391 1.03877 1.23526 1.01614 1.03679 0.94389 0.86784 1.86209 1.67227 1.28237 0.93952 1.23629 0.97016 0.95968 0.97118 1.21638 1.02972 1.01918 0.91593 1.21480 0.94370 0.93299 0.99457 1.22036 1.02230 0.99045 0.97958 1.22758 0.95475 0.97422 0.89004 1.68161 1.11496 1.03767 1.36904 1.19597 0.79452 0.86971 0.84100 1.90699 1.48768 1.17094 1.85428 1.46385 1.63469 1.16358 1.08786 1.19170 0.95230 0.93036 0.79573 1.21172 1.45250 0.98915 0.93014 0.91870 1.24947 0.94658 0.95375 0.98972 1.69963 1.41640 1.16307 1.24315 0.86456 0.78538 0.80531 0.81283 1.20032 1.21043 1.20036 0.91160 0.90017 0.91573 0.84339 0.84551 0.84852 0.82610 0.77460 0.95307 0.95298 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.01 37.16 0.33 -1.61 16 2 C -0.10 -1.59 2.68 -27.88 -0.07 -1.67 16 3 H 0.11 1.68 8.13 -51.92 -0.42 1.26 16 4 S 0.00 0.01 20.58 -107.50 -2.21 -2.20 16 5 C 0.11 1.45 6.85 -16.93 -0.12 1.33 16 6 C -0.15 -1.62 9.84 -39.21 -0.39 -2.01 16 7 C -0.06 -0.48 10.17 -39.32 -0.40 -0.88 16 8 C -0.19 -1.48 10.11 -39.41 -0.40 -1.88 16 9 C 0.11 1.08 11.17 -17.57 -0.20 0.88 16 10 N -0.49 -6.12 7.45 -12.10 -0.09 -6.21 16 11 C 0.52 10.63 7.00 -10.98 -0.08 10.56 16 12 O -0.54 -13.24 16.04 5.56 0.09 -13.15 16 13 N -0.70 -14.96 5.55 -61.47 -0.34 -15.30 16 14 C 0.25 6.66 5.43 -5.19 -0.03 6.63 16 15 C -0.55 -14.79 9.28 -34.44 -0.32 -15.11 16 16 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 17 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 19 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.08 1.07 5.96 -51.93 -0.31 0.76 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 27 H 0.14 0.71 8.06 -52.48 -0.42 0.28 16 28 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 29 H 0.16 1.06 8.06 -52.48 -0.42 0.63 16 30 H 0.39 7.19 8.32 -40.82 -0.34 6.85 16 31 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 303.88 15.07 4.58 4.58 Total: -1.00 -32.59 303.88 -8.00 -40.60 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -3.99 Total: 3.28 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -1.76 Total: -2.06 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: 0.31 Total: -46.86 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.09 Total: -13.15 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -2.21 Total: -2.20 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.59 -8.00 -40.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427646797.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.632 kcal (2) G-P(sol) polarization free energy of solvation -32.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds