Wall clock time and date at job start Mon Mar 30 2020 00:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 S 1.81396 * 109.47254 * 239.99784 * 2 1 3 5 5 C 1.76208 * 102.99695 * 65.00165 * 4 2 1 6 6 C 1.39196 * 119.70538 * 179.72223 * 5 4 2 7 7 C 1.38276 * 119.09111 * 179.77249 * 6 5 4 8 8 C 1.38913 * 118.51060 * 0.49621 * 7 6 5 9 9 C 1.38033 * 119.33781 * 359.74708 * 8 7 6 10 10 N 1.31963 * 120.86331 * 0.02562 * 9 8 7 11 11 C 1.50699 * 109.46866 * 119.99952 * 2 1 3 12 12 O 1.21280 * 119.99870 * 99.99795 * 11 2 1 13 13 N 1.34787 * 120.00036 * 280.00204 * 11 2 1 14 14 C 1.46500 * 120.00020 * 180.02562 * 13 11 2 15 15 C 1.50698 * 109.47107 * 179.97438 * 14 13 11 16 16 H 1.07998 * 119.99660 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99991 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00013 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00147 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47234 * 59.99952 * 19 17 15 21 21 H 1.48494 * 109.47421 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47081 * 300.00299 * 19 17 15 23 23 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 24 24 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.07995 * 120.45809 * 0.02711 * 6 5 4 27 27 H 1.08003 * 120.74761 * 180.24826 * 7 6 5 28 28 H 1.08003 * 120.33414 * 179.72839 * 8 7 6 29 29 H 1.08003 * 119.56897 * 179.97438 * 9 8 7 30 30 H 0.96999 * 119.99391 * 359.97438 * 13 11 2 31 31 H 1.09004 * 109.46910 * 299.99699 * 14 13 11 32 32 H 1.08998 * 109.47114 * 59.99637 * 14 13 11 33 33 H 0.96996 * 119.99988 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1348 -0.8552 -1.4811 5 6 1.5828 0.1847 -2.7922 6 6 1.8728 -0.1549 -4.1106 7 6 1.4294 0.6677 -5.1298 8 6 0.7170 1.8124 -4.7955 9 6 0.4695 2.0910 -3.4664 10 7 0.9008 1.2856 -2.5142 11 6 2.0323 -0.7104 1.2305 12 8 2.4064 -1.8617 1.1558 13 7 2.0658 -0.0663 2.4140 14 6 2.5546 -0.7568 3.6101 15 6 2.4898 0.1772 4.7910 16 1 2.1218 1.1845 4.6632 17 6 2.9004 -0.2542 6.0345 18 7 3.3490 -1.4807 6.1899 19 14 2.8195 0.9033 7.4984 20 1 1.4140 1.3319 7.7134 21 1 3.3150 0.2035 8.7107 22 1 3.6655 2.0949 7.2346 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 2.4328 -1.0507 -4.3347 27 1 1.6358 0.4277 -6.1624 28 1 0.3605 2.4780 -5.5678 29 1 -0.0837 2.9802 -3.2023 30 1 1.7669 0.8545 2.4736 31 1 1.9338 -1.6316 3.8038 32 1 3.5862 -1.0711 3.4521 33 1 3.6375 -1.7843 7.0648 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427646797.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:53 Heat of formation + Delta-G solvation = -31.200986 kcal Electronic energy + Delta-G solvation = -16898.307651 eV Core-core repulsion = 14049.056339 eV Total energy + Delta-G solvation = -2849.251312 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.81965 -40.70921 -36.24227 -34.77554 -34.04300 -33.19942 -32.13725 -29.34509 -26.00550 -24.70956 -24.52578 -24.13594 -21.55995 -19.60428 -18.60808 -17.71509 -17.45136 -17.23690 -16.81481 -16.42412 -16.17908 -15.72481 -15.23450 -15.06668 -14.59972 -14.41606 -14.06920 -13.92932 -13.55543 -13.30372 -13.02409 -12.93483 -12.68530 -12.51530 -12.24567 -11.54255 -11.30017 -11.00220 -10.91701 -10.81795 -10.70116 -10.47621 -9.94688 -8.63950 -8.30464 -6.47647 0.05426 0.25045 0.34196 1.12859 1.42958 1.47050 1.55313 1.57715 2.26637 2.46881 2.77730 3.04404 3.61924 3.70114 3.81079 4.01577 4.02565 4.17887 4.23525 4.44759 4.63344 4.73944 4.81468 5.05421 5.09887 5.13332 5.19700 5.27891 5.40453 5.60331 5.73258 5.80581 6.60616 6.72879 6.80988 7.17768 7.32662 8.81565 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.043920 B = 0.003604 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.363082 B = 7768.248616 C = 8182.026843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.080 4.080 3 H 0.129 0.871 4 S -0.054 6.054 5 C 0.093 3.907 6 C -0.162 4.162 7 C -0.055 4.055 8 C -0.172 4.172 9 C 0.099 3.901 10 N -0.512 5.512 11 C 0.515 3.485 12 O -0.584 6.584 13 N -0.696 5.696 14 C 0.267 3.733 15 C -0.559 4.559 16 H 0.085 0.915 17 C 0.005 3.995 18 N -0.930 5.930 19 Si 0.986 3.014 20 H -0.261 1.261 21 H -0.285 1.285 22 H -0.262 1.262 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.053 0.947 26 H 0.145 0.855 27 H 0.172 0.828 28 H 0.171 0.829 29 H 0.183 0.817 30 H 0.410 0.590 31 H -0.008 1.008 32 H -0.010 1.010 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.266 10.336 -22.700 25.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.212 4.212 3 H 0.147 0.853 4 S 0.188 5.812 5 C -0.155 4.155 6 C -0.188 4.188 7 C -0.083 4.083 8 C -0.195 4.195 9 C -0.061 4.061 10 N -0.225 5.225 11 C 0.300 3.700 12 O -0.465 6.465 13 N -0.345 5.345 14 C 0.145 3.855 15 C -0.596 4.596 16 H 0.103 0.897 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.809 3.191 20 H -0.186 1.186 21 H -0.211 1.211 22 H -0.187 1.187 23 H 0.099 0.901 24 H 0.115 0.885 25 H 0.072 0.928 26 H 0.162 0.838 27 H 0.189 0.811 28 H 0.189 0.811 29 H 0.200 0.800 30 H 0.246 0.754 31 H 0.010 0.990 32 H 0.008 0.992 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.450 8.533 -21.627 24.127 hybrid contribution -0.320 1.195 0.341 1.283 sum -6.770 9.728 -21.285 24.362 Atomic orbital electron populations 1.21927 0.88816 1.03009 1.05086 1.23277 1.02619 1.03299 0.92043 0.85302 1.86285 1.68962 1.30573 0.95403 1.23274 0.99253 0.96613 0.96352 1.21861 1.03062 1.02734 0.91159 1.21936 0.93242 0.92644 1.00447 1.22507 1.00046 0.98783 0.98130 1.23318 0.95488 0.97760 0.89485 1.68024 1.11989 1.04012 1.38510 1.20380 0.78055 0.86535 0.85048 1.90673 1.50314 1.19302 1.86245 1.46093 1.63572 1.16983 1.07855 1.18620 0.92415 0.92565 0.81920 1.21568 1.45179 0.99728 0.93154 0.89721 1.26067 0.93812 0.97079 1.02531 1.70130 1.42722 1.18725 1.25285 0.85192 0.79273 0.78094 0.76578 1.18562 1.21053 1.18669 0.90068 0.88524 0.92764 0.83761 0.81057 0.81115 0.80011 0.75411 0.99026 0.99172 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.58 9.01 71.98 0.65 -2.93 16 2 C -0.08 -2.59 2.68 29.85 0.08 -2.51 16 3 H 0.13 3.73 8.13 -2.39 -0.02 3.71 16 4 S -0.05 -1.72 20.58 -56.49 -1.16 -2.88 16 5 C 0.09 2.34 6.85 84.83 0.58 2.92 16 6 C -0.16 -3.13 9.84 22.51 0.22 -2.91 16 7 C -0.06 -0.70 10.17 22.44 0.23 -0.47 16 8 C -0.17 -1.93 10.11 22.38 0.23 -1.70 16 9 C 0.10 1.56 11.17 84.62 0.95 2.50 16 10 N -0.51 -11.84 7.45 -192.21 -1.43 -13.27 16 11 C 0.52 22.02 7.00 87.66 0.61 22.63 16 12 O -0.58 -30.30 16.04 -3.03 -0.05 -30.35 16 13 N -0.70 -30.47 5.55 -466.78 -2.59 -33.06 16 14 C 0.27 14.90 5.43 85.63 0.46 15.37 16 15 C -0.56 -30.60 9.28 25.60 0.24 -30.36 16 16 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 17 C 0.00 0.28 5.46 84.65 0.46 0.74 16 18 N -0.93 -56.44 13.29 21.45 0.28 -56.15 16 19 Si 0.99 42.42 29.54 68.60 2.03 44.44 16 20 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 21 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16 22 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 23 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.10 2.41 5.96 -2.39 -0.01 2.39 16 25 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 27 H 0.17 0.94 8.06 -2.91 -0.02 0.92 16 28 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 29 H 0.18 1.75 8.06 -2.91 -0.02 1.72 16 30 H 0.41 14.90 8.32 -92.71 -0.77 14.12 16 31 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 32 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 33 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -74.39 303.88 2.14 -72.25 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.35 Total: 15.74 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 4.71 Total: 3.29 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -3.74 Total: -102.49 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.05 Total: -30.35 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -1.16 Total: -2.88 kcal Total: -74.39 2.14 -72.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427646797.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.048 kcal (2) G-P(sol) polarization free energy of solvation -74.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds