Wall clock time and date at job start Mon Mar 30 2020 00:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29514 * 121.52923 * 2 1 4 4 S 1.69486 * 107.84193 * 179.72836 * 3 2 1 5 5 C 1.72020 * 96.02759 * 359.97438 * 4 3 2 6 6 C 1.37906 * 105.36363 * 0.02562 * 5 4 3 7 7 C 1.47332 * 123.08370 * 180.02562 * 6 5 4 8 8 O 1.21621 * 119.99855 * 185.61932 * 7 6 5 9 9 N 1.34780 * 120.00489 * 5.61530 * 7 6 5 10 10 C 1.46501 * 120.00367 * 185.82549 * 9 7 6 11 11 C 1.52995 * 109.46945 * 183.65684 * 10 9 7 12 12 C 1.50698 * 115.54987 * 306.94593 * 11 10 9 13 13 H 1.08002 * 119.99372 * 145.21120 * 12 11 10 14 14 C 1.37874 * 120.00224 * 325.21561 * 12 11 10 15 15 N 1.31512 * 120.00085 * 348.98930 * 14 12 11 16 16 Si 1.86806 * 119.99804 * 168.99271 * 14 12 11 17 17 H 1.48502 * 109.47004 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47227 * 120.00347 * 16 14 12 19 19 H 1.48505 * 109.46689 * 240.00080 * 16 14 12 20 20 C 1.53001 * 117.49556 * 161.28384 * 11 10 9 21 21 C 1.53001 * 117.49895 * 92.62359 * 11 10 9 22 22 H 1.09007 * 109.46882 * 90.03001 * 1 2 3 23 23 H 1.08995 * 109.47611 * 210.02837 * 1 2 3 24 24 H 1.09005 * 109.47187 * 330.03069 * 1 2 3 25 25 H 1.08000 * 127.31844 * 179.97438 * 5 4 3 26 26 H 0.97002 * 119.99643 * 5.83182 * 9 7 6 27 27 H 1.09003 * 109.47159 * 303.66068 * 10 9 7 28 28 H 1.09003 * 109.46789 * 63.65748 * 10 9 7 29 29 H 0.96996 * 119.99811 * 185.02427 * 15 14 12 30 30 H 1.09001 * 117.49991 * 359.97438 * 20 11 10 31 31 H 1.09000 * 117.50309 * 145.02401 * 20 11 10 32 32 H 1.09001 * 117.49766 * 214.97661 * 21 11 10 33 33 H 1.09003 * 117.49585 * 359.97379 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1039 0.0000 4 16 3.8310 0.7029 0.0076 5 6 3.6017 -1.0019 0.0117 6 6 2.2351 -1.1868 0.0063 7 6 1.6036 -2.5179 0.0080 8 8 0.3964 -2.6184 -0.1001 9 7 2.3637 -3.6244 0.1294 10 6 1.7530 -4.9501 0.0034 11 6 2.8082 -6.0251 0.2712 12 6 4.0692 -5.9161 -0.5466 13 1 5.0190 -6.1938 -0.1139 14 6 4.0105 -5.4619 -1.8470 15 7 2.8469 -5.3300 -2.4455 16 14 5.5837 -5.0339 -2.7589 17 1 6.7502 -5.2674 -1.8700 18 1 5.7031 -5.8880 -3.9678 19 1 5.5483 -3.6055 -3.1635 20 6 2.3126 -7.4295 0.6216 21 6 2.9381 -6.5460 1.7040 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3634 -0.8897 0.5142 24 1 -0.3634 0.8903 0.5134 25 1 4.3657 -1.7653 0.0166 26 1 3.3150 -3.5428 0.3003 27 1 0.9433 -5.0474 0.7266 28 1 1.3566 -5.0731 -1.0046 29 1 2.8088 -5.0807 -3.3821 30 1 1.2348 -7.5875 0.6617 31 1 2.8989 -8.2747 0.2611 32 1 3.9356 -6.8103 2.0549 33 1 2.2720 -6.1225 2.4558 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431171558.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:12:49 Heat of formation + Delta-G solvation = 25.136577 kcal Electronic energy + Delta-G solvation = -18072.356839 eV Core-core repulsion = 15225.548507 eV Total energy + Delta-G solvation = -2846.808332 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.84661 -37.83416 -36.58691 -33.42694 -32.30169 -31.27722 -29.33041 -26.31764 -25.47310 -23.84171 -21.32275 -20.66598 -19.44030 -19.02504 -18.03547 -16.68085 -16.12063 -15.10681 -14.80375 -14.71481 -14.30306 -13.96157 -13.56099 -13.19676 -13.05321 -12.67427 -12.21473 -12.10419 -11.79826 -11.59816 -11.21554 -11.15654 -10.86441 -10.59876 -10.58235 -10.35310 -9.70888 -9.58706 -9.26424 -9.09606 -8.91185 -8.59977 -8.33387 -7.94066 -6.17487 -4.27567 0.59230 1.48625 1.85326 2.10832 3.10735 3.23106 3.24478 3.79900 3.97888 4.20103 4.65261 4.84658 5.13455 5.39043 5.49436 5.54744 5.56629 5.83187 5.91036 5.96148 6.23594 6.35177 6.47611 6.55239 6.63683 6.77577 6.86062 7.00855 7.21265 7.43522 7.47913 7.81723 8.22798 8.38272 8.72328 8.95358 9.33292 10.79361 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.018406 B = 0.007204 C = 0.005941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.876991 B = 3885.736398 C = 4711.591943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.165 3.835 3 N -0.476 5.476 4 S 0.261 5.739 5 C -0.168 4.168 6 C -0.199 4.199 7 C 0.572 3.428 8 O -0.551 6.551 9 N -0.677 5.677 10 C 0.163 3.837 11 C 0.035 3.965 12 C -0.501 4.501 13 H 0.063 0.937 14 C 0.076 3.924 15 N -0.865 5.865 16 Si 0.885 3.115 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.281 1.281 20 C -0.194 4.194 21 C -0.212 4.212 22 H 0.083 0.917 23 H 0.110 0.890 24 H 0.068 0.932 25 H 0.192 0.808 26 H 0.399 0.601 27 H 0.031 0.969 28 H 0.110 0.890 29 H 0.264 0.736 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.110 8.013 4.408 9.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.013 4.013 3 N -0.296 5.296 4 S 0.416 5.584 5 C -0.317 4.317 6 C -0.220 4.220 7 C 0.355 3.645 8 O -0.433 6.433 9 N -0.324 5.324 10 C 0.040 3.960 11 C 0.035 3.965 12 C -0.539 4.539 13 H 0.081 0.919 14 C -0.129 4.129 15 N -0.500 5.500 16 Si 0.712 3.288 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.207 1.207 20 C -0.233 4.233 21 C -0.249 4.249 22 H 0.101 0.899 23 H 0.128 0.872 24 H 0.087 0.913 25 H 0.210 0.790 26 H 0.234 0.766 27 H 0.049 0.951 28 H 0.128 0.872 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.074 10.099 4.138 10.967 hybrid contribution 0.725 -1.637 -0.581 1.883 sum 1.800 8.462 3.557 9.354 Atomic orbital electron populations 1.20854 0.85492 1.04572 1.04208 1.21481 0.99531 0.86812 0.93495 1.76445 1.00071 1.26270 1.26857 1.83866 1.11136 0.96599 1.66765 1.27476 0.99747 1.04004 1.00516 1.20669 0.92124 0.96923 1.12330 1.17187 0.86533 0.82850 0.77933 1.90661 1.13703 1.86616 1.52286 1.45669 1.11993 1.05801 1.68932 1.21058 0.93114 0.78925 1.02880 1.19195 0.95756 0.90414 0.91158 1.20530 0.91609 1.44693 0.97041 0.91877 1.24978 0.95963 0.94617 0.97365 1.69854 1.23419 1.45673 1.11087 0.86642 0.83668 0.78471 0.80044 1.19505 1.20782 1.20671 1.22919 0.98034 0.97378 1.04971 1.22976 1.00444 1.08031 0.93469 0.89863 0.87216 0.91310 0.79041 0.76610 0.95069 0.87235 0.92557 0.91430 0.90164 0.90598 0.91289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.32 9.44 36.01 0.34 -0.98 16 2 C 0.16 2.69 6.75 -83.20 -0.56 2.13 16 3 N -0.48 -7.50 11.97 32.50 0.39 -7.11 16 4 S 0.26 3.47 23.69 -107.50 -2.55 0.93 16 5 C -0.17 -2.45 10.77 30.61 0.33 -2.12 16 6 C -0.20 -3.41 5.86 -105.95 -0.62 -4.03 16 7 C 0.57 11.41 7.74 -12.56 -0.10 11.31 16 8 O -0.55 -12.09 13.83 5.26 0.07 -12.01 16 9 N -0.68 -13.78 5.21 -61.41 -0.32 -14.10 16 10 C 0.16 3.66 4.75 -4.04 -0.02 3.64 16 11 C 0.04 0.80 2.00 -155.66 -0.31 0.49 16 12 C -0.50 -12.14 8.25 -34.44 -0.28 -12.42 16 13 H 0.06 1.54 7.84 -52.49 -0.41 1.13 16 14 C 0.08 1.85 5.10 -17.82 -0.09 1.76 16 15 N -0.86 -22.21 10.77 55.43 0.60 -21.61 16 16 Si 0.88 19.05 29.56 -169.99 -5.02 14.02 16 17 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 C -0.19 -4.12 9.96 -26.69 -0.27 -4.39 16 21 C -0.21 -4.24 9.92 -26.69 -0.26 -4.51 16 22 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 23 H 0.11 1.75 5.78 -51.93 -0.30 1.45 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.19 2.46 7.27 -52.49 -0.38 2.08 16 26 H 0.40 7.64 6.56 -40.82 -0.27 7.37 16 27 H 0.03 0.69 8.06 -51.93 -0.42 0.27 16 28 H 0.11 2.81 6.08 -51.93 -0.32 2.49 16 29 H 0.26 6.63 8.32 -40.82 -0.34 6.29 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 32 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 295.64 15.07 4.46 4.46 Total: -1.00 -26.92 295.64 -7.99 -34.91 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -3.77 Total: 9.64 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -1.85 Total: -9.12 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.67 Total: -42.82 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.07 Total: -12.01 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.02 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -2.55 Total: 0.93 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -26.92 -7.99 -34.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431171558.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.042 kcal (2) G-P(sol) polarization free energy of solvation -26.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds