Wall clock time and date at job start Mon Mar 30 2020 00:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29514 * 121.52923 * 2 1 4 4 S 1.69486 * 107.84193 * 179.72836 * 3 2 1 5 5 C 1.72020 * 96.02759 * 359.97438 * 4 3 2 6 6 C 1.37906 * 105.36363 * 0.02562 * 5 4 3 7 7 C 1.47332 * 123.08370 * 180.02562 * 6 5 4 8 8 O 1.21621 * 119.99855 * 185.61932 * 7 6 5 9 9 N 1.34780 * 120.00489 * 5.61530 * 7 6 5 10 10 C 1.46501 * 120.00367 * 185.82549 * 9 7 6 11 11 C 1.52995 * 109.46945 * 183.65684 * 10 9 7 12 12 C 1.50698 * 115.54987 * 306.94593 * 11 10 9 13 13 H 1.08002 * 119.99372 * 145.21120 * 12 11 10 14 14 C 1.37874 * 120.00224 * 325.21561 * 12 11 10 15 15 N 1.31512 * 120.00085 * 348.98930 * 14 12 11 16 16 Si 1.86806 * 119.99804 * 168.99271 * 14 12 11 17 17 H 1.48502 * 109.47004 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47227 * 120.00347 * 16 14 12 19 19 H 1.48505 * 109.46689 * 240.00080 * 16 14 12 20 20 C 1.53001 * 117.49556 * 161.28384 * 11 10 9 21 21 C 1.53001 * 117.49895 * 92.62359 * 11 10 9 22 22 H 1.09007 * 109.46882 * 90.03001 * 1 2 3 23 23 H 1.08995 * 109.47611 * 210.02837 * 1 2 3 24 24 H 1.09005 * 109.47187 * 330.03069 * 1 2 3 25 25 H 1.08000 * 127.31844 * 179.97438 * 5 4 3 26 26 H 0.97002 * 119.99643 * 5.83182 * 9 7 6 27 27 H 1.09003 * 109.47159 * 303.66068 * 10 9 7 28 28 H 1.09003 * 109.46789 * 63.65748 * 10 9 7 29 29 H 0.96996 * 119.99811 * 185.02427 * 15 14 12 30 30 H 1.09001 * 117.49991 * 359.97438 * 20 11 10 31 31 H 1.09000 * 117.50309 * 145.02401 * 20 11 10 32 32 H 1.09001 * 117.49766 * 214.97661 * 21 11 10 33 33 H 1.09003 * 117.49585 * 359.97379 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1039 0.0000 4 16 3.8310 0.7029 0.0076 5 6 3.6017 -1.0019 0.0117 6 6 2.2351 -1.1868 0.0063 7 6 1.6036 -2.5179 0.0080 8 8 0.3964 -2.6184 -0.1001 9 7 2.3637 -3.6244 0.1294 10 6 1.7530 -4.9501 0.0034 11 6 2.8082 -6.0251 0.2712 12 6 4.0692 -5.9161 -0.5466 13 1 5.0190 -6.1938 -0.1139 14 6 4.0105 -5.4619 -1.8470 15 7 2.8469 -5.3300 -2.4455 16 14 5.5837 -5.0339 -2.7589 17 1 6.7502 -5.2674 -1.8700 18 1 5.7031 -5.8880 -3.9678 19 1 5.5483 -3.6055 -3.1635 20 6 2.3126 -7.4295 0.6216 21 6 2.9381 -6.5460 1.7040 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3634 -0.8897 0.5142 24 1 -0.3634 0.8903 0.5134 25 1 4.3657 -1.7653 0.0166 26 1 3.3150 -3.5428 0.3003 27 1 0.9433 -5.0474 0.7266 28 1 1.3566 -5.0731 -1.0046 29 1 2.8088 -5.0807 -3.3821 30 1 1.2348 -7.5875 0.6617 31 1 2.8989 -8.2747 0.2611 32 1 3.9356 -6.8103 2.0549 33 1 2.2720 -6.1225 2.4558 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431171558.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:12:48 Heat of formation + Delta-G solvation = 9.500498 kcal Electronic energy + Delta-G solvation = -18073.034871 eV Core-core repulsion = 15225.548507 eV Total energy + Delta-G solvation = -2847.486363 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.24327 -39.29999 -38.23280 -35.02211 -34.14593 -32.57653 -30.51261 -28.01824 -27.27069 -25.16410 -22.96246 -22.08074 -21.18089 -20.36295 -19.42687 -18.16548 -17.72949 -16.76213 -16.38007 -16.25734 -15.72376 -15.40829 -15.04196 -14.73766 -14.41114 -14.24313 -13.57890 -13.42709 -13.36427 -13.20280 -12.90000 -12.63424 -12.38451 -12.25807 -12.03474 -11.78664 -11.42050 -11.06260 -10.80933 -10.71510 -10.61199 -10.11590 -9.83275 -9.53549 -8.02261 -6.17961 -0.61334 0.33411 0.69366 0.80145 1.40081 1.48141 1.56155 2.30298 2.40805 2.47393 3.04845 3.49141 3.66019 3.93084 4.06319 4.27448 4.34456 4.42431 4.54789 4.67559 4.72014 4.77836 4.81926 4.98593 5.12992 5.19475 5.30090 5.53956 5.60643 5.62464 5.80382 5.93607 6.39328 6.75212 6.91415 7.40222 7.45218 8.92405 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.018406 B = 0.007204 C = 0.005941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.876991 B = 3885.736398 C = 4711.591943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.156 3.844 3 N -0.497 5.497 4 S 0.335 5.665 5 C -0.162 4.162 6 C -0.228 4.228 7 C 0.570 3.430 8 O -0.579 6.579 9 N -0.677 5.677 10 C 0.176 3.824 11 C 0.009 3.991 12 C -0.507 4.507 13 H 0.060 0.940 14 C 0.040 3.960 15 N -0.891 5.891 16 Si 0.939 3.061 17 H -0.262 1.262 18 H -0.292 1.292 19 H -0.277 1.277 20 C -0.199 4.199 21 C -0.186 4.186 22 H 0.083 0.917 23 H 0.092 0.908 24 H 0.088 0.912 25 H 0.209 0.791 26 H 0.404 0.596 27 H 0.028 0.972 28 H 0.075 0.925 29 H 0.259 0.741 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.789 9.098 5.099 10.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.020 4.020 3 N -0.319 5.319 4 S 0.490 5.510 5 C -0.312 4.312 6 C -0.249 4.249 7 C 0.355 3.645 8 O -0.462 6.462 9 N -0.324 5.324 10 C 0.052 3.948 11 C 0.009 3.991 12 C -0.544 4.544 13 H 0.079 0.921 14 C -0.162 4.162 15 N -0.528 5.528 16 Si 0.765 3.235 17 H -0.185 1.185 18 H -0.218 1.218 19 H -0.203 1.203 20 C -0.238 4.238 21 C -0.223 4.223 22 H 0.101 0.899 23 H 0.111 0.889 24 H 0.107 0.893 25 H 0.226 0.774 26 H 0.240 0.760 27 H 0.046 0.954 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.770 11.190 4.848 12.505 hybrid contribution 0.272 -1.944 -0.770 2.109 sum 3.042 9.245 4.078 10.553 Atomic orbital electron populations 1.20796 0.85109 1.04668 1.04205 1.21527 1.00125 0.86658 0.93734 1.76307 1.01883 1.26354 1.27339 1.83646 1.08809 0.94295 1.64246 1.27800 0.99173 1.05874 0.98314 1.20452 0.93206 0.95601 1.15691 1.17579 0.86263 0.83753 0.76882 1.90642 1.14963 1.87251 1.53361 1.45553 1.12227 1.05273 1.69337 1.20695 0.93177 0.80196 1.00687 1.19261 0.95613 0.91108 0.93156 1.20699 0.92008 1.44397 0.97302 0.92149 1.25526 0.98037 0.94607 0.98025 1.70017 1.25032 1.46826 1.10902 0.85800 0.81094 0.78027 0.78591 1.18541 1.21834 1.20258 1.22936 0.98585 0.96589 1.05639 1.22966 1.01018 1.05941 0.92420 0.89892 0.88928 0.89288 0.77365 0.75967 0.95360 0.90691 0.93137 0.90707 0.90641 0.89714 0.89761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.52 9.44 71.24 0.67 -1.84 16 2 C 0.16 4.95 6.75 43.14 0.29 5.24 16 3 N -0.50 -14.66 11.97 -51.09 -0.61 -15.27 16 4 S 0.33 7.89 23.69 -56.49 -1.34 6.55 16 5 C -0.16 -4.37 10.77 67.74 0.73 -3.64 16 6 C -0.23 -7.61 5.86 -20.72 -0.12 -7.73 16 7 C 0.57 22.88 7.74 86.64 0.67 23.56 16 8 O -0.58 -26.03 13.83 -4.10 -0.06 -26.09 16 9 N -0.68 -27.50 5.21 -466.45 -2.43 -29.92 16 10 C 0.18 8.00 4.75 86.38 0.41 8.41 16 11 C 0.01 0.41 2.00 -52.93 -0.11 0.31 16 12 C -0.51 -24.15 8.25 25.60 0.21 -23.94 16 13 H 0.06 2.86 7.84 -2.91 -0.02 2.84 16 14 C 0.04 1.95 5.10 84.65 0.43 2.38 16 15 N -0.89 -46.28 10.77 21.45 0.23 -46.05 16 16 Si 0.94 38.44 29.56 68.60 2.03 40.47 16 17 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 18 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 19 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 20 C -0.20 -8.28 9.96 30.62 0.30 -7.97 16 21 C -0.19 -7.12 9.92 30.62 0.30 -6.81 16 22 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 23 H 0.09 3.02 5.78 -2.39 -0.01 3.01 16 24 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 25 H 0.21 4.78 7.27 -2.91 -0.02 4.76 16 26 H 0.40 15.18 6.56 -92.71 -0.61 14.57 16 27 H 0.03 1.27 8.06 -2.39 -0.02 1.25 16 28 H 0.08 3.97 6.08 -2.39 -0.01 3.95 16 29 H 0.26 13.20 8.32 -92.71 -0.77 12.43 16 30 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 31 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 32 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 33 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -56.69 295.64 2.16 -54.54 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: 0.53 Total: 27.82 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: 3.80 Total: -12.04 kcal Atomic # 7 Polarization: -88.44 SS G_CDS: -2.81 Total: -91.25 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.06 Total: -26.09 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Atomic # 16 Polarization: 7.89 SS G_CDS: -1.34 Total: 6.55 kcal Total: -56.69 2.16 -54.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431171558.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.039 kcal (2) G-P(sol) polarization free energy of solvation -56.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds