Wall clock time and date at job start Mon Mar 30 2020 01:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00042 * 2 1 4 4 C 1.52997 * 109.47139 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47356 * 65.00148 * 4 3 2 6 6 C 1.36936 * 119.99732 * 275.56770 * 5 4 3 7 7 H 1.08001 * 119.99750 * 145.83206 * 6 5 4 8 8 C 1.38810 * 120.00299 * 325.82399 * 6 5 4 9 9 N 1.31617 * 120.00035 * 337.09529 * 8 6 5 10 10 Si 1.86804 * 119.99951 * 157.09593 * 8 6 5 11 11 H 1.48492 * 109.47230 * 59.99729 * 10 8 6 12 12 H 1.48497 * 109.47095 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47032 * 299.99996 * 10 8 6 14 14 C 1.46497 * 120.00019 * 95.56248 * 5 4 3 15 15 C 1.50694 * 109.47596 * 270.00206 * 14 5 4 16 16 C 1.32831 * 124.71719 * 89.99508 * 15 14 5 17 17 C 1.44409 * 113.06811 * 180.29089 * 16 15 14 18 18 C 1.43203 * 123.45094 * 179.73334 * 17 16 15 19 19 N 6.50935 * 73.60208 * 318.78254 * 2 1 3 20 20 C 1.35945 * 113.09744 * 359.50993 * 17 16 15 21 21 S 1.70443 * 110.83223 * 0.47768 * 20 17 16 22 22 H 1.08997 * 109.47357 * 299.99875 * 1 2 3 23 23 H 1.08998 * 109.46821 * 59.99841 * 1 2 3 24 24 H 1.08998 * 109.47127 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46992 * 60.00165 * 3 2 1 26 26 H 1.08991 * 109.47065 * 300.00249 * 3 2 1 27 27 H 1.09010 * 109.47292 * 304.99917 * 4 3 2 28 28 H 1.09007 * 109.47152 * 185.00529 * 4 3 2 29 29 H 0.96995 * 120.00220 * 180.02562 * 9 8 6 30 30 H 1.09004 * 109.47270 * 150.00201 * 14 5 4 31 31 H 1.09000 * 109.47015 * 30.00439 * 14 5 4 32 32 H 1.07993 * 123.46866 * 0.02974 * 16 15 14 33 33 H 1.08007 * 124.58283 * 180.19552 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 3.9889 -0.7999 -1.3715 7 1 3.7654 -1.2598 -2.3228 8 6 4.2885 -1.5915 -0.2713 9 7 4.9809 -1.0915 0.7301 10 14 3.7091 -3.3664 -0.2120 11 1 4.2847 -4.1136 -1.3590 12 1 4.1548 -3.9904 1.0596 13 1 2.2267 -3.4060 -0.2894 14 6 4.4049 1.4026 -2.3732 15 6 3.2171 1.7213 -3.2440 16 6 2.4252 2.7761 -3.0871 17 6 1.3586 2.8326 -4.0590 18 6 0.3740 3.8720 -4.0909 19 7 -0.4086 4.6973 -4.1147 20 6 1.3879 1.8007 -4.9435 21 16 2.6869 0.7499 -4.6063 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.6886 1.8464 0.8900 26 1 1.6886 1.8464 -0.8899 27 1 3.8508 0.5685 0.8428 28 1 3.9785 2.1766 0.0903 29 1 5.1907 -1.6446 1.4988 30 1 5.1532 0.8698 -2.9601 31 1 4.8345 2.3288 -1.9915 32 1 2.5622 3.5133 -2.3099 33 1 0.6807 1.6626 -5.7481 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453597484.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:52 Heat of formation + Delta-G solvation = 40.516407 kcal Electronic energy + Delta-G solvation = -18116.988681 eV Core-core repulsion = 15270.847269 eV Total energy + Delta-G solvation = -2846.141412 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.10364 -37.10643 -35.96018 -35.03430 -31.79803 -30.20259 -28.53716 -25.69431 -25.60102 -24.51091 -22.95904 -20.63763 -19.67359 -17.60252 -16.67907 -16.57916 -15.71288 -14.99716 -14.70320 -14.20132 -13.95829 -13.87775 -13.48714 -13.38300 -13.26079 -12.79329 -12.58352 -12.03825 -11.94180 -11.75507 -11.36410 -11.08051 -10.79086 -10.75837 -10.71868 -10.39184 -10.12389 -10.00399 -9.72742 -8.83874 -8.54275 -8.34417 -8.09574 -6.67578 -5.74130 -3.30568 1.00753 1.84494 2.22430 2.32039 2.83519 3.44060 3.49838 3.56856 3.63635 4.26107 4.55726 4.75438 4.99642 5.36194 5.49572 5.57297 5.68729 5.81298 5.87371 5.96181 6.13512 6.21341 6.22266 6.33633 6.40603 6.42685 6.62820 6.66187 6.76208 7.61164 7.67621 7.83887 8.12535 8.51942 9.16051 9.82386 10.31819 11.26164 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.021227 B = 0.007091 C = 0.006507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.737320 B = 3947.864021 C = 4301.901815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.349 6.349 3 C 0.045 3.955 4 C 0.134 3.866 5 N -0.563 5.563 6 C -0.248 4.248 7 H 0.059 0.941 8 C 0.027 3.973 9 N -0.889 5.889 10 Si 0.898 3.102 11 H -0.285 1.285 12 H -0.294 1.294 13 H -0.280 1.280 14 C 0.200 3.800 15 C -0.161 4.161 16 C -0.126 4.126 17 C -0.058 4.058 18 C 0.285 3.715 19 N -0.442 5.442 20 C -0.222 4.222 21 S 0.220 5.780 22 H 0.024 0.976 23 H 0.027 0.973 24 H 0.073 0.927 25 H 0.020 0.980 26 H 0.033 0.967 27 H 0.111 0.889 28 H 0.041 0.959 29 H 0.254 0.746 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.143 0.857 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.544 4.240 -6.875 8.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.266 6.266 3 C -0.034 4.034 4 C 0.008 3.992 5 N -0.280 5.280 6 C -0.377 4.377 7 H 0.077 0.923 8 C -0.173 4.173 9 N -0.532 5.532 10 Si 0.727 3.273 11 H -0.211 1.211 12 H -0.220 1.220 13 H -0.206 1.206 14 C 0.070 3.930 15 C -0.282 4.282 16 C -0.155 4.155 17 C -0.078 4.078 18 C -0.031 4.031 19 N -0.119 5.119 20 C -0.364 4.364 21 S 0.487 5.513 22 H 0.043 0.957 23 H 0.046 0.954 24 H 0.091 0.909 25 H 0.038 0.962 26 H 0.052 0.948 27 H 0.128 0.872 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.161 0.839 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.988 3.896 -7.371 9.242 hybrid contribution -1.325 0.409 0.765 1.584 sum -5.313 4.305 -6.607 9.508 Atomic orbital electron populations 1.22609 0.84541 1.01305 0.98279 1.88239 1.16222 1.27388 1.94783 1.23414 0.98594 0.84401 0.97036 1.21231 0.87983 0.96578 0.93392 1.43724 1.72990 1.02356 1.08963 1.18763 1.41463 0.80555 0.96907 0.92322 1.24871 0.96829 0.97656 0.97965 1.69894 1.37315 1.36520 1.09465 0.86468 0.79424 0.84778 0.76586 1.21122 1.21988 1.20639 1.19557 0.88807 0.95703 0.88917 1.26253 1.05271 0.96722 1.00000 1.20788 0.94361 1.00461 0.99906 1.16283 0.96520 0.94138 1.00875 1.25324 0.92446 0.92450 0.92883 1.81269 1.10790 1.10765 1.09060 1.25457 1.06569 0.99883 1.04459 1.83291 1.19021 1.24792 1.24230 0.95712 0.95435 0.90872 0.96202 0.94832 0.87191 0.94093 0.93588 0.91516 0.92030 0.83913 0.81811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.35 -7.68 9.91 -35.23 -0.35 -8.03 16 3 C 0.04 0.89 6.28 37.16 0.23 1.12 16 4 C 0.13 2.91 5.83 -4.05 -0.02 2.88 16 5 N -0.56 -12.44 2.44 -174.61 -0.43 -12.87 16 6 C -0.25 -6.21 8.70 -15.06 -0.13 -6.34 16 7 H 0.06 1.47 7.93 -52.49 -0.42 1.06 16 8 C 0.03 0.71 5.00 -17.43 -0.09 0.62 16 9 N -0.89 -24.38 11.26 55.49 0.62 -23.75 16 10 Si 0.90 21.46 29.61 -169.99 -5.03 16.43 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 C 0.20 3.58 6.17 -5.20 -0.03 3.55 16 15 C -0.16 -2.54 5.91 -36.17 -0.21 -2.76 16 16 C -0.13 -1.86 8.52 -39.02 -0.33 -2.19 16 17 C -0.06 -0.82 5.84 -106.37 -0.62 -1.44 16 18 C 0.29 4.28 15.63 -22.42 -0.35 3.93 16 19 N -0.44 -7.29 18.55 41.90 0.78 -6.51 16 20 C -0.22 -2.83 10.78 29.91 0.32 -2.51 16 21 S 0.22 3.05 23.00 -107.50 -2.47 0.58 16 22 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.03 0.64 6.23 -51.93 -0.32 0.31 16 27 H 0.11 2.80 5.32 -51.92 -0.28 2.52 16 28 H 0.04 0.79 7.83 -51.92 -0.41 0.38 16 29 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 30 H 0.07 1.20 8.04 -51.93 -0.42 0.78 16 31 H 0.06 1.01 7.86 -51.93 -0.41 0.60 16 32 H 0.14 1.99 8.06 -52.49 -0.42 1.56 16 33 H 0.16 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 305.96 15.07 4.61 4.61 Total: -1.00 -28.44 305.96 -6.31 -34.75 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: -3.92 Total: -3.70 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -0.12 Total: -1.50 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.98 Total: -43.14 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.35 Total: -8.03 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -2.47 Total: 0.58 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.44 -6.31 -34.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453597484.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.270 kcal (2) G-P(sol) polarization free energy of solvation -28.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds