Wall clock time and date at job start Mon Mar 30 2020 01:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99848 * 2 1 4 4 C 1.53001 * 109.47226 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46827 * 64.99743 * 4 3 2 6 6 C 1.36929 * 120.00387 * 270.00277 * 5 4 3 7 7 H 1.07995 * 120.00469 * 141.36930 * 6 5 4 8 8 C 1.38813 * 119.99947 * 321.36829 * 6 5 4 9 9 N 1.31618 * 120.00262 * 159.99233 * 8 6 5 10 10 Si 1.86801 * 120.00032 * 339.99637 * 8 6 5 11 11 H 1.48500 * 109.47082 * 95.38378 * 10 8 6 12 12 H 1.48497 * 109.47043 * 215.38561 * 10 8 6 13 13 H 1.48497 * 109.47022 * 335.38497 * 10 8 6 14 14 C 1.46507 * 119.99785 * 90.00348 * 5 4 3 15 15 C 1.50701 * 109.46943 * 268.80045 * 14 5 4 16 16 C 1.33714 * 124.50924 * 95.64242 * 15 14 5 17 17 C 1.37615 * 115.09708 * 180.02562 * 16 15 14 18 18 C 1.36629 * 113.26767 * 359.97438 * 17 16 15 19 19 C 1.43203 * 125.45966 * 180.02562 * 18 17 16 20 20 N 6.97395 * 72.67491 * 277.74688 * 2 1 3 21 21 S 1.70610 * 124.51520 * 275.63941 * 15 14 5 22 22 H 1.09010 * 109.47019 * 299.99969 * 1 2 3 23 23 H 1.09004 * 109.47671 * 59.99745 * 1 2 3 24 24 H 1.08998 * 109.47377 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47134 * 60.00103 * 3 2 1 26 26 H 1.09004 * 109.46948 * 300.00512 * 3 2 1 27 27 H 1.09000 * 109.47336 * 305.00079 * 4 3 2 28 28 H 1.08999 * 109.47144 * 184.99630 * 4 3 2 29 29 H 0.97003 * 120.00244 * 180.02562 * 9 8 6 30 30 H 1.08994 * 109.47241 * 148.80556 * 14 5 4 31 31 H 1.09005 * 109.47051 * 28.80080 * 14 5 4 32 32 H 1.08005 * 122.45532 * 359.97438 * 16 15 14 33 33 H 1.07995 * 123.36864 * 180.26970 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.0966 -0.7969 -1.3370 7 1 3.8052 -1.3101 -2.2414 8 6 4.5940 -1.5174 -0.2597 9 7 4.3558 -2.8084 -0.1652 10 14 5.6013 -0.6547 1.0558 11 1 4.7164 -0.2725 2.1855 12 1 6.6627 -1.5701 1.5462 13 1 6.2253 0.5642 0.4815 14 6 4.2862 1.4008 -2.4149 15 6 3.0483 1.5695 -3.2576 16 6 2.2140 2.6113 -3.1780 17 6 1.1418 2.5676 -4.0396 18 6 1.1285 1.4522 -4.8285 19 6 0.1363 1.1433 -5.8138 20 7 -0.6478 0.8974 -6.5968 21 16 2.5249 0.4568 -4.4403 22 1 -0.3633 0.5139 0.8901 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.6885 1.8464 0.8901 26 1 1.6884 1.8464 -0.8900 27 1 3.8515 0.5683 0.8409 28 1 3.9784 2.1766 0.0889 29 1 4.7030 -3.3118 0.5878 30 1 5.0669 0.9238 -3.0075 31 1 4.6320 2.3778 -2.0773 32 1 2.3695 3.4271 -2.4875 33 1 0.3889 3.3402 -4.0907 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453604399.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:54 Heat of formation + Delta-G solvation = 49.233417 kcal Electronic energy + Delta-G solvation = -18093.369950 eV Core-core repulsion = 15247.606536 eV Total energy + Delta-G solvation = -2845.763414 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.25666 -37.26391 -36.31759 -35.38420 -31.87727 -30.69059 -28.83977 -26.43401 -25.69337 -23.84088 -22.61413 -20.84643 -20.60577 -17.96351 -16.73562 -16.04626 -15.93232 -15.41548 -14.82520 -14.51035 -14.31970 -14.03673 -13.68738 -13.34732 -13.07019 -12.88517 -12.60597 -12.28268 -12.17291 -11.90729 -11.78745 -11.36037 -11.12732 -10.86314 -10.71713 -10.50757 -10.32061 -9.80058 -9.61438 -8.90876 -8.64802 -8.27797 -8.20452 -6.96317 -5.95374 -3.42757 0.78193 1.52567 2.30074 2.65301 3.08751 3.31212 3.44961 3.47534 3.48913 4.14970 4.51804 4.56302 4.90811 5.20715 5.38772 5.58003 5.59526 5.70576 5.79237 5.86626 5.96581 5.97488 6.07146 6.11223 6.17756 6.25367 6.31335 6.45488 6.65104 6.67350 7.57851 7.91781 8.07071 8.36753 8.90026 9.69994 10.02035 11.19535 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.022775 B = 0.006905 C = 0.006543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.105117 B = 4054.243561 C = 4278.181622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.347 6.347 3 C 0.041 3.959 4 C 0.132 3.868 5 N -0.584 5.584 6 C -0.265 4.265 7 H 0.079 0.921 8 C 0.049 3.951 9 N -0.893 5.893 10 Si 0.879 3.121 11 H -0.286 1.286 12 H -0.303 1.303 13 H -0.270 1.270 14 C 0.200 3.800 15 C -0.168 4.168 16 C -0.174 4.174 17 C -0.054 4.054 18 C -0.213 4.213 19 C 0.295 3.705 20 N -0.434 5.434 21 S 0.280 5.720 22 H 0.025 0.975 23 H 0.029 0.971 24 H 0.078 0.922 25 H 0.025 0.975 26 H 0.046 0.954 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.262 0.738 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.139 0.861 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.774 11.654 -2.810 12.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.264 6.264 3 C -0.038 4.038 4 C 0.006 3.994 5 N -0.304 5.304 6 C -0.393 4.393 7 H 0.096 0.904 8 C -0.152 4.152 9 N -0.533 5.533 10 Si 0.709 3.291 11 H -0.215 1.215 12 H -0.231 1.231 13 H -0.195 1.195 14 C 0.071 3.929 15 C -0.293 4.293 16 C -0.203 4.203 17 C -0.092 4.092 18 C -0.334 4.334 19 C -0.019 4.019 20 N -0.112 5.112 21 S 0.548 5.452 22 H 0.044 0.956 23 H 0.048 0.952 24 H 0.096 0.904 25 H 0.043 0.957 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.157 0.843 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.213 9.501 -4.435 10.967 hybrid contribution -0.279 2.123 1.896 2.860 sum -3.492 11.624 -2.539 12.400 Atomic orbital electron populations 1.22629 0.83778 1.01834 0.98269 1.88279 1.16890 1.26420 1.94818 1.23310 0.97130 0.85331 0.98047 1.21417 0.90606 0.96631 0.90736 1.44046 1.75615 1.03899 1.06878 1.18557 1.38145 0.79455 1.03148 0.90390 1.25308 0.97425 0.94789 0.97697 1.69848 1.44991 1.07480 1.31030 0.86921 0.80472 0.79466 0.82195 1.21463 1.23115 1.19482 1.19595 0.89179 0.95833 0.88251 1.25891 1.05069 0.97463 1.00868 1.19732 0.95935 1.01245 1.03433 1.20548 0.98529 0.95907 0.94197 1.20523 1.03225 1.04058 1.05601 1.24418 0.92189 0.93343 0.91987 1.81193 1.10503 1.08300 1.11210 1.83481 1.13147 1.20154 1.28418 0.95647 0.95211 0.90392 0.95664 0.93599 0.91867 0.92551 0.92789 0.90755 0.91650 0.84345 0.84166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.65 16 2 O -0.35 -7.44 10.18 -35.23 -0.36 -7.80 16 3 C 0.04 0.75 6.28 37.16 0.23 0.98 16 4 C 0.13 2.59 4.95 -4.04 -0.02 2.57 16 5 N -0.58 -12.25 2.03 -174.61 -0.36 -12.60 16 6 C -0.26 -6.77 9.43 -15.06 -0.14 -6.91 16 7 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 8 C 0.05 1.35 5.34 -17.43 -0.09 1.25 16 9 N -0.89 -26.43 13.97 55.49 0.78 -25.65 16 10 Si 0.88 21.15 24.92 -169.99 -4.24 16.91 16 11 H -0.29 -6.85 6.70 56.52 0.38 -6.47 16 12 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 13 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 14 C 0.20 3.32 6.15 -5.19 -0.03 3.29 16 15 C -0.17 -2.54 5.59 -35.89 -0.20 -2.74 16 16 C -0.17 -2.25 8.26 -41.40 -0.34 -2.59 16 17 C -0.05 -0.67 10.24 -40.39 -0.41 -1.09 16 18 C -0.21 -3.02 6.32 -38.24 -0.24 -3.26 16 19 C 0.30 4.49 15.82 -22.50 -0.36 4.13 16 20 N -0.43 -7.22 18.53 41.80 0.77 -6.44 16 21 S 0.28 4.26 23.01 -107.50 -2.47 1.79 16 22 H 0.03 0.37 8.14 -51.92 -0.42 -0.06 16 23 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 25 H 0.03 0.41 8.14 -51.92 -0.42 -0.02 16 26 H 0.05 0.77 5.98 -51.93 -0.31 0.45 16 27 H 0.06 1.42 3.23 -51.93 -0.17 1.26 16 28 H 0.06 0.92 7.88 -51.93 -0.41 0.51 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.07 1.23 8.05 -51.93 -0.42 0.82 16 31 H 0.07 0.92 7.86 -51.93 -0.41 0.51 16 32 H 0.14 1.53 8.06 -52.48 -0.42 1.11 16 33 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 301.01 15.07 4.54 4.54 Total: -1.00 -30.36 301.01 -5.66 -36.02 By element: Atomic # 1 Polarization: -0.23 SS G_CDS: -3.83 Total: -4.06 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -0.50 Total: -2.71 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 1.19 Total: -44.70 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.36 Total: -7.80 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.24 Total: 16.91 kcal Atomic # 16 Polarization: 4.26 SS G_CDS: -2.47 Total: 1.79 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.36 -5.66 -36.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453604399.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.257 kcal (2) G-P(sol) polarization free energy of solvation -30.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds