Wall clock time and date at job start Mon Mar 30 2020 01:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99848 * 2 1 4 4 C 1.53001 * 109.47226 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46827 * 64.99743 * 4 3 2 6 6 C 1.36929 * 120.00387 * 270.00277 * 5 4 3 7 7 H 1.07995 * 120.00469 * 141.36930 * 6 5 4 8 8 C 1.38813 * 119.99947 * 321.36829 * 6 5 4 9 9 N 1.31618 * 120.00262 * 159.99233 * 8 6 5 10 10 Si 1.86801 * 120.00032 * 339.99637 * 8 6 5 11 11 H 1.48500 * 109.47082 * 95.38378 * 10 8 6 12 12 H 1.48497 * 109.47043 * 215.38561 * 10 8 6 13 13 H 1.48497 * 109.47022 * 335.38497 * 10 8 6 14 14 C 1.46507 * 119.99785 * 90.00348 * 5 4 3 15 15 C 1.50701 * 109.46943 * 268.80045 * 14 5 4 16 16 C 1.33714 * 124.50924 * 95.64242 * 15 14 5 17 17 C 1.37615 * 115.09708 * 180.02562 * 16 15 14 18 18 C 1.36629 * 113.26767 * 359.97438 * 17 16 15 19 19 C 1.43203 * 125.45966 * 180.02562 * 18 17 16 20 20 N 6.97395 * 72.67491 * 277.74688 * 2 1 3 21 21 S 1.70610 * 124.51520 * 275.63941 * 15 14 5 22 22 H 1.09010 * 109.47019 * 299.99969 * 1 2 3 23 23 H 1.09004 * 109.47671 * 59.99745 * 1 2 3 24 24 H 1.08998 * 109.47377 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47134 * 60.00103 * 3 2 1 26 26 H 1.09004 * 109.46948 * 300.00512 * 3 2 1 27 27 H 1.09000 * 109.47336 * 305.00079 * 4 3 2 28 28 H 1.08999 * 109.47144 * 184.99630 * 4 3 2 29 29 H 0.97003 * 120.00244 * 180.02562 * 9 8 6 30 30 H 1.08994 * 109.47241 * 148.80556 * 14 5 4 31 31 H 1.09005 * 109.47051 * 28.80080 * 14 5 4 32 32 H 1.08005 * 122.45532 * 359.97438 * 16 15 14 33 33 H 1.07995 * 123.36864 * 180.26970 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.0966 -0.7969 -1.3370 7 1 3.8052 -1.3101 -2.2414 8 6 4.5940 -1.5174 -0.2597 9 7 4.3558 -2.8084 -0.1652 10 14 5.6013 -0.6547 1.0558 11 1 4.7164 -0.2725 2.1855 12 1 6.6627 -1.5701 1.5462 13 1 6.2253 0.5642 0.4815 14 6 4.2862 1.4008 -2.4149 15 6 3.0483 1.5695 -3.2576 16 6 2.2140 2.6113 -3.1780 17 6 1.1418 2.5676 -4.0396 18 6 1.1285 1.4522 -4.8285 19 6 0.1363 1.1433 -5.8138 20 7 -0.6478 0.8974 -6.5968 21 16 2.5249 0.4568 -4.4403 22 1 -0.3633 0.5139 0.8901 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.6885 1.8464 0.8901 26 1 1.6884 1.8464 -0.8900 27 1 3.8515 0.5683 0.8409 28 1 3.9784 2.1766 0.0889 29 1 4.7030 -3.3118 0.5878 30 1 5.0669 0.9238 -3.0075 31 1 4.6320 2.3778 -2.0773 32 1 2.3695 3.4271 -2.4875 33 1 0.3889 3.3402 -4.0907 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453604399.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:54 Heat of formation + Delta-G solvation = 30.009852 kcal Electronic energy + Delta-G solvation = -18094.203547 eV Core-core repulsion = 15247.606536 eV Total energy + Delta-G solvation = -2846.597011 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.49418 -38.62488 -37.62125 -36.86737 -33.75107 -32.03159 -30.27429 -27.84027 -27.10894 -25.29286 -23.99418 -22.42574 -21.72174 -19.25703 -18.41064 -17.59602 -17.18042 -16.90672 -16.32853 -15.84151 -15.71792 -15.38926 -15.05706 -14.65824 -14.59218 -14.27171 -13.94448 -13.83956 -13.50666 -13.21867 -13.09901 -12.76576 -12.58536 -12.37667 -12.23057 -11.97738 -11.60568 -11.53186 -11.35881 -10.54650 -10.29956 -9.52659 -9.37500 -8.68951 -8.00849 -5.42919 -0.34536 0.36012 1.17867 1.41186 1.50269 1.56727 1.60239 1.91571 2.33185 2.56694 2.97953 3.20688 3.21273 3.60358 4.09661 4.40742 4.44955 4.49017 4.56985 4.60654 4.67051 4.71394 4.75055 4.80366 4.90568 5.04107 5.13847 5.18754 5.36235 5.59386 6.08637 6.34715 6.38295 6.65313 7.10817 7.76527 8.13767 9.18570 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.022775 B = 0.006905 C = 0.006543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.105117 B = 4054.243561 C = 4278.181622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.397 6.397 3 C 0.041 3.959 4 C 0.123 3.877 5 N -0.597 5.597 6 C -0.230 4.230 7 H 0.041 0.959 8 C -0.017 4.017 9 N -0.953 5.953 10 Si 0.942 3.058 11 H -0.286 1.286 12 H -0.322 1.322 13 H -0.243 1.243 14 C 0.199 3.801 15 C -0.179 4.179 16 C -0.155 4.155 17 C -0.035 4.035 18 C -0.215 4.215 19 C 0.309 3.691 20 N -0.463 5.463 21 S 0.224 5.776 22 H 0.050 0.950 23 H 0.041 0.959 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.033 0.967 28 H 0.100 0.900 29 H 0.255 0.745 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.172 0.828 33 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.265 15.696 -2.259 16.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.316 6.316 3 C -0.037 4.037 4 C -0.002 4.002 5 N -0.318 5.318 6 C -0.360 4.360 7 H 0.059 0.941 8 C -0.212 4.212 9 N -0.598 5.598 10 Si 0.772 3.228 11 H -0.214 1.214 12 H -0.252 1.252 13 H -0.166 1.166 14 C 0.071 3.929 15 C -0.303 4.303 16 C -0.185 4.185 17 C -0.073 4.073 18 C -0.336 4.336 19 C -0.005 4.005 20 N -0.142 5.142 21 S 0.493 5.507 22 H 0.068 0.932 23 H 0.060 0.940 24 H 0.088 0.912 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.051 0.949 28 H 0.118 0.882 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.123 0.877 32 H 0.190 0.810 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.709 13.611 -3.913 14.640 hybrid contribution -0.224 0.968 1.606 1.889 sum -3.934 14.579 -2.307 15.275 Atomic orbital electron populations 1.22721 0.81814 1.02042 0.99955 1.88212 1.19331 1.28837 1.95225 1.23364 0.95879 0.84442 1.00050 1.21581 0.92121 0.97875 0.88648 1.44102 1.76362 1.02496 1.08822 1.18402 1.34727 0.81866 1.00997 0.94119 1.25946 0.99451 0.95223 1.00581 1.70011 1.47954 1.09514 1.32334 0.85894 0.78377 0.78753 0.79771 1.21382 1.25169 1.16625 1.19746 0.89664 0.96687 0.86764 1.25616 1.05231 0.98141 1.01291 1.20081 0.94595 1.00873 1.02929 1.20961 0.98606 0.95395 0.92289 1.20503 1.02435 1.04548 1.06128 1.24526 0.91793 0.92558 0.91599 1.81208 1.11627 1.09188 1.12169 1.83768 1.14976 1.21870 1.30090 0.93197 0.94027 0.91160 0.93068 0.91835 0.94930 0.88193 0.93601 0.91722 0.87709 0.81022 0.80704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.99 11.01 113.37 1.25 2.24 16 2 O -0.40 -16.47 10.18 -148.98 -1.52 -17.99 16 3 C 0.04 1.34 6.28 71.98 0.45 1.79 16 4 C 0.12 4.37 4.95 86.38 0.43 4.80 16 5 N -0.60 -23.73 2.03 -706.33 -1.44 -25.17 16 6 C -0.23 -11.90 9.43 84.03 0.79 -11.10 16 7 H 0.04 2.38 8.06 -2.91 -0.02 2.36 16 8 C -0.02 -0.92 5.34 84.86 0.45 -0.47 16 9 N -0.95 -59.13 13.97 21.65 0.30 -58.82 16 10 Si 0.94 44.16 24.92 68.60 1.71 45.86 16 11 H -0.29 -13.17 6.70 99.48 0.67 -12.50 16 12 H -0.32 -15.86 7.11 99.48 0.71 -15.15 16 13 H -0.24 -10.11 7.11 99.48 0.71 -9.40 16 14 C 0.20 5.98 6.15 85.63 0.53 6.51 16 15 C -0.18 -4.87 5.59 24.66 0.14 -4.73 16 16 C -0.15 -3.21 8.26 21.09 0.17 -3.04 16 17 C -0.04 -0.71 10.24 21.75 0.22 -0.49 16 18 C -0.22 -5.60 6.32 23.14 0.15 -5.46 16 19 C 0.31 8.96 15.82 88.34 1.40 10.36 16 20 N -0.46 -14.99 18.53 18.99 0.35 -14.64 16 21 S 0.22 6.72 23.01 -56.49 -1.30 5.42 16 22 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 23 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 24 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 25 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.06 1.80 5.98 -2.38 -0.01 1.79 16 27 H 0.03 1.39 3.23 -2.39 -0.01 1.38 16 28 H 0.10 2.67 7.88 -2.39 -0.02 2.65 16 29 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 30 H 0.06 2.05 8.05 -2.39 -0.02 2.03 16 31 H 0.11 2.36 7.86 -2.38 -0.02 2.34 16 32 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 33 H 0.18 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -69.17 301.01 5.17 -64.00 By element: Atomic # 1 Polarization: -0.15 SS G_CDS: 1.08 Total: 0.93 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 5.98 Total: 0.40 kcal Atomic # 7 Polarization: -97.85 SS G_CDS: -0.78 Total: -98.63 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -1.52 Total: -17.99 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.71 Total: 45.86 kcal Atomic # 16 Polarization: 6.72 SS G_CDS: -1.30 Total: 5.42 kcal Total: -69.17 5.17 -64.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453604399.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.010 kcal (2) G-P(sol) polarization free energy of solvation -69.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds