Wall clock time and date at job start Mon Mar 30 2020 00:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47239 * 2 1 4 4 C 1.50696 * 109.47492 * 119.99593 * 2 1 3 5 5 H 1.08002 * 119.99929 * 119.99752 * 4 2 1 6 6 C 1.37879 * 120.00362 * 300.00633 * 4 2 1 7 7 N 1.31511 * 119.99951 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00103 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46965 * 59.99900 * 8 6 4 10 10 H 1.48498 * 109.46988 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47258 * 299.99794 * 8 6 4 12 12 N 1.46499 * 109.47194 * 240.00068 * 2 1 3 13 13 C 1.46499 * 120.00136 * 299.99618 * 12 2 1 14 14 C 1.34784 * 119.99971 * 119.99876 * 12 2 1 15 15 O 1.21758 * 119.99723 * 0.02562 * 14 12 2 16 16 C 1.41709 * 119.99558 * 179.97438 * 14 12 2 17 17 C 1.35235 * 119.99390 * 179.97438 * 16 14 12 18 18 C 1.46718 * 119.99697 * 180.02562 * 17 16 14 19 19 C 1.36518 * 123.29751 * 179.73446 * 18 17 16 20 20 S 1.70942 * 108.70901 * 179.87004 * 19 18 17 21 21 C 1.70732 * 91.21656 * 0.32997 * 20 19 18 22 22 N 1.28611 * 110.81255 * 359.80082 * 21 20 19 23 23 H 1.09005 * 109.46870 * 299.99937 * 1 2 3 24 24 H 1.08998 * 109.47156 * 59.99876 * 1 2 3 25 25 H 1.08997 * 109.46947 * 180.02562 * 1 2 3 26 26 H 0.96994 * 120.00289 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.47146 * 270.00590 * 13 12 2 28 28 H 1.09005 * 109.46881 * 29.99979 * 13 12 2 29 29 H 1.08999 * 109.46920 * 149.99631 * 13 12 2 30 30 H 1.07995 * 120.00362 * 0.28015 * 16 14 12 31 31 H 1.07999 * 120.00218 * 0.02562 * 17 16 14 32 32 H 1.07998 * 125.64662 * 0.02562 * 19 18 17 33 33 H 1.07998 * 124.59424 * 179.78280 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9435 0.8302 2.6035 8 14 2.3215 -1.1202 4.0080 9 1 3.8066 -1.1206 4.0081 10 1 1.8271 -0.4198 5.2204 11 1 1.8261 -2.5201 4.0078 12 7 2.0183 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0355 -2.0834 15 8 3.0877 1.1300 -1.8904 16 6 3.2660 -0.7038 -3.2401 17 6 4.0430 -0.0463 -4.1305 18 6 4.5321 -0.7380 -5.3285 19 6 5.3151 -0.1387 -6.2727 20 16 5.6683 -1.2791 -7.4962 21 6 4.7537 -2.4771 -6.6944 22 7 4.2501 -2.0148 -5.6050 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 0.7095 1.1618 3.4844 27 1 2.4158 -2.7376 -0.9716 28 1 0.6905 -2.3002 -0.9846 29 1 1.6238 -2.2851 -2.5002 30 1 3.0017 -1.7365 -3.4131 31 1 4.3036 0.9878 -3.9598 32 1 5.6570 0.8854 -6.2492 33 1 4.6163 -3.4864 -7.0534 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491494933.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:30 Heat of formation + Delta-G solvation = 33.764086 kcal Electronic energy + Delta-G solvation = -17290.099431 eV Core-core repulsion = 14443.665216 eV Total energy + Delta-G solvation = -2846.434215 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.95706 -39.07060 -35.39064 -33.32567 -32.69183 -30.33231 -29.12482 -26.16911 -25.60346 -25.15217 -23.64282 -20.77631 -19.64712 -18.47050 -17.54002 -16.89028 -16.25097 -15.71586 -15.11674 -14.74614 -14.34438 -14.26727 -13.79983 -13.53201 -13.04830 -12.55449 -12.38100 -12.04237 -11.81302 -11.48071 -11.18052 -11.01735 -10.78363 -10.65953 -10.31302 -10.20210 -10.11675 -9.97225 -9.85503 -9.14781 -8.97074 -8.38508 -8.32220 -7.49086 -6.02860 -4.10699 0.30578 1.15072 1.40390 1.52438 2.94669 3.31229 3.35809 3.38176 3.98277 4.08133 4.15568 4.44771 4.90576 4.97998 5.08378 5.27620 5.40638 5.50092 5.83236 6.01763 6.14495 6.35902 6.38867 6.53294 6.81940 6.88739 7.11103 7.44937 7.50409 7.58418 7.76248 8.06573 8.24486 8.58388 8.87750 9.09902 9.55546 11.02453 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.039887 B = 0.003669 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.817270 B = 7630.320867 C = 7731.625462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.256 3.744 3 H 0.064 0.936 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.585 5.585 13 C 0.085 3.915 14 C 0.529 3.471 15 O -0.559 6.559 16 C -0.159 4.159 17 C -0.031 4.031 18 C 0.084 3.916 19 C -0.276 4.276 20 S 0.179 5.821 21 C 0.000 4.000 22 N -0.448 5.448 23 H 0.094 0.906 24 H 0.012 0.988 25 H 0.030 0.970 26 H 0.263 0.737 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.135 0.865 31 H 0.145 0.855 32 H 0.183 0.817 33 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.724 -6.514 -19.522 21.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.156 3.844 3 H 0.082 0.918 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.315 5.315 13 C -0.059 4.059 14 C 0.319 3.681 15 O -0.441 6.441 16 C -0.182 4.182 17 C -0.054 4.054 18 C -0.047 4.047 19 C -0.417 4.417 20 S 0.434 5.566 21 C -0.299 4.299 22 N -0.161 5.161 23 H 0.112 0.888 24 H 0.031 0.969 25 H 0.049 0.951 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.153 0.847 31 H 0.163 0.837 32 H 0.200 0.800 33 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 6.989 -6.182 -19.829 21.915 hybrid contribution -0.056 -0.259 1.685 1.705 sum 6.934 -6.440 -18.144 20.464 Atomic orbital electron populations 1.22094 0.98204 0.99383 1.00865 1.18950 0.90884 0.94613 0.79988 0.91780 1.21297 1.31777 1.12967 0.90310 0.92329 1.24893 0.94974 0.94994 0.98935 1.69869 1.36423 1.22620 1.23812 0.86547 0.79243 0.79573 0.81970 1.20259 1.21181 1.20233 1.48198 1.48252 1.11627 1.23434 1.21625 1.01566 0.83091 0.99644 1.17065 0.80168 0.86919 0.83926 1.90767 1.58845 1.16964 1.77543 1.22508 0.99019 1.01528 0.95131 1.21685 0.95185 0.99056 0.89474 1.19735 0.99028 0.88840 0.97133 1.26868 1.07907 1.06708 1.00167 1.82762 1.47342 1.02333 1.24182 1.28425 1.00881 1.05289 0.95280 1.66962 1.21504 1.11553 1.16093 0.88779 0.96936 0.95083 0.92662 0.93206 0.90842 0.92552 0.84735 0.83707 0.80011 0.78307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 8.95 37.16 0.33 -3.29 16 2 C 0.26 6.79 2.64 -69.09 -0.18 6.61 16 3 H 0.06 1.96 6.90 -51.93 -0.36 1.60 16 4 C -0.52 -14.63 8.37 -34.44 -0.29 -14.92 16 5 H 0.06 1.61 7.65 -52.49 -0.40 1.21 16 6 C 0.06 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -25.64 11.32 55.43 0.63 -25.01 16 8 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.59 -13.26 2.75 -178.65 -0.49 -13.75 16 13 C 0.08 1.53 9.37 59.85 0.56 2.09 16 14 C 0.53 11.75 7.45 -14.93 -0.11 11.64 16 15 O -0.56 -14.35 15.43 5.14 0.08 -14.27 16 16 C -0.16 -2.80 8.65 -39.33 -0.34 -3.14 16 17 C -0.03 -0.49 9.52 -37.23 -0.35 -0.84 16 18 C 0.08 1.11 6.66 -84.27 -0.56 0.55 16 19 C -0.28 -2.79 10.99 30.11 0.33 -2.46 16 20 S 0.18 1.32 22.96 -107.50 -2.47 -1.15 16 21 C 0.00 0.00 12.15 51.41 0.62 0.63 16 22 N -0.45 -5.75 9.96 -12.22 -0.12 -5.87 16 23 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 24 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.03 0.70 6.66 -51.93 -0.35 0.36 16 26 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.32 6.43 -51.93 -0.33 0.98 16 29 H 0.06 0.84 6.08 -51.93 -0.32 0.53 16 30 H 0.13 2.16 5.62 -52.49 -0.29 1.87 16 31 H 0.15 2.24 7.45 -52.49 -0.39 1.85 16 32 H 0.18 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.20 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 296.89 15.07 4.47 4.47 Total: -1.00 -33.17 296.89 -6.59 -39.75 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -3.58 Total: 0.82 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.44 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 0.01 Total: -44.63 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.08 Total: -14.27 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.47 Total: -1.15 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.17 -6.59 -39.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491494933.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.518 kcal (2) G-P(sol) polarization free energy of solvation -33.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds