Wall clock time and date at job start Mon Mar 30 2020 00:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47239 * 2 1 4 4 C 1.50696 * 109.47492 * 119.99593 * 2 1 3 5 5 H 1.08002 * 119.99929 * 119.99752 * 4 2 1 6 6 C 1.37879 * 120.00362 * 300.00633 * 4 2 1 7 7 N 1.31511 * 119.99951 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00103 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46965 * 59.99900 * 8 6 4 10 10 H 1.48498 * 109.46988 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47258 * 299.99794 * 8 6 4 12 12 N 1.46499 * 109.47194 * 240.00068 * 2 1 3 13 13 C 1.46499 * 120.00136 * 299.99618 * 12 2 1 14 14 C 1.34784 * 119.99971 * 119.99876 * 12 2 1 15 15 O 1.21758 * 119.99723 * 0.02562 * 14 12 2 16 16 C 1.41709 * 119.99558 * 179.97438 * 14 12 2 17 17 C 1.35235 * 119.99390 * 179.97438 * 16 14 12 18 18 C 1.46718 * 119.99697 * 180.02562 * 17 16 14 19 19 C 1.36518 * 123.29751 * 179.73446 * 18 17 16 20 20 S 1.70942 * 108.70901 * 179.87004 * 19 18 17 21 21 C 1.70732 * 91.21656 * 0.32997 * 20 19 18 22 22 N 1.28611 * 110.81255 * 359.80082 * 21 20 19 23 23 H 1.09005 * 109.46870 * 299.99937 * 1 2 3 24 24 H 1.08998 * 109.47156 * 59.99876 * 1 2 3 25 25 H 1.08997 * 109.46947 * 180.02562 * 1 2 3 26 26 H 0.96994 * 120.00289 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.47146 * 270.00590 * 13 12 2 28 28 H 1.09005 * 109.46881 * 29.99979 * 13 12 2 29 29 H 1.08999 * 109.46920 * 149.99631 * 13 12 2 30 30 H 1.07995 * 120.00362 * 0.28015 * 16 14 12 31 31 H 1.07999 * 120.00218 * 0.02562 * 17 16 14 32 32 H 1.07998 * 125.64662 * 0.02562 * 19 18 17 33 33 H 1.07998 * 124.59424 * 179.78280 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9435 0.8302 2.6035 8 14 2.3215 -1.1202 4.0080 9 1 3.8066 -1.1206 4.0081 10 1 1.8271 -0.4198 5.2204 11 1 1.8261 -2.5201 4.0078 12 7 2.0183 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0355 -2.0834 15 8 3.0877 1.1300 -1.8904 16 6 3.2660 -0.7038 -3.2401 17 6 4.0430 -0.0463 -4.1305 18 6 4.5321 -0.7380 -5.3285 19 6 5.3151 -0.1387 -6.2727 20 16 5.6683 -1.2791 -7.4962 21 6 4.7537 -2.4771 -6.6944 22 7 4.2501 -2.0148 -5.6050 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 0.7095 1.1618 3.4844 27 1 2.4158 -2.7376 -0.9716 28 1 0.6905 -2.3002 -0.9846 29 1 1.6238 -2.2851 -2.5002 30 1 3.0017 -1.7365 -3.4131 31 1 4.3036 0.9878 -3.9598 32 1 5.6570 0.8854 -6.2492 33 1 4.6163 -3.4864 -7.0534 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491494933.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:30 Heat of formation + Delta-G solvation = 11.370426 kcal Electronic energy + Delta-G solvation = -17291.070493 eV Core-core repulsion = 14443.665216 eV Total energy + Delta-G solvation = -2847.405277 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.09958 -40.47752 -37.25030 -34.94236 -34.34198 -31.73905 -30.62664 -27.71164 -27.31485 -26.57828 -24.88951 -22.43186 -20.60920 -19.91790 -18.73084 -18.56843 -18.00852 -17.19527 -16.55334 -16.14069 -16.00930 -15.49628 -14.93455 -14.75887 -14.44001 -14.20389 -14.02091 -13.50003 -13.42798 -12.97183 -12.76520 -12.73741 -12.55731 -12.51967 -12.18939 -12.12771 -11.39312 -11.20375 -10.79406 -10.69556 -10.57840 -10.50888 -9.47379 -9.13458 -8.14872 -6.32112 -0.60605 0.34412 0.48307 0.78947 1.40812 1.43676 1.51279 1.89643 2.33275 2.53891 2.59488 3.12304 3.22741 3.82693 4.10877 4.20379 4.28825 4.42347 4.48272 4.67008 4.76289 4.87157 4.99945 5.00635 5.04887 5.19852 5.27714 5.45658 5.65524 5.66474 6.03319 6.15108 6.68133 6.74922 6.80253 7.29015 7.45255 8.89442 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.039887 B = 0.003669 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.817270 B = 7630.320867 C = 7731.625462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.259 3.741 3 H 0.010 0.990 4 C -0.542 4.542 5 H 0.058 0.942 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.967 3.033 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.262 1.262 12 N -0.596 5.596 13 C 0.084 3.916 14 C 0.525 3.475 15 O -0.611 6.611 16 C -0.193 4.193 17 C 0.005 3.995 18 C 0.041 3.959 19 C -0.273 4.273 20 S 0.272 5.728 21 C -0.009 4.009 22 N -0.485 5.485 23 H 0.070 0.930 24 H 0.020 0.980 25 H 0.048 0.952 26 H 0.265 0.735 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.151 0.849 31 H 0.138 0.862 32 H 0.200 0.800 33 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.999 -8.622 -21.764 24.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.157 3.843 3 H 0.028 0.972 4 C -0.580 4.580 5 H 0.076 0.924 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.792 3.208 9 H -0.203 1.203 10 H -0.206 1.206 11 H -0.187 1.187 12 N -0.325 5.325 13 C -0.058 4.058 14 C 0.318 3.682 15 O -0.497 6.497 16 C -0.215 4.215 17 C -0.017 4.017 18 C -0.091 4.091 19 C -0.414 4.414 20 S 0.528 5.472 21 C -0.307 4.307 22 N -0.198 5.198 23 H 0.089 0.911 24 H 0.039 0.961 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.168 0.832 31 H 0.156 0.844 32 H 0.217 0.783 33 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 8.260 -8.340 -22.108 25.031 hybrid contribution -0.286 0.446 2.089 2.155 sum 7.974 -7.893 -20.019 22.949 Atomic orbital electron populations 1.21883 0.96984 1.00201 1.00036 1.18573 0.91782 0.92290 0.81629 0.97183 1.21543 1.32110 1.13123 0.91237 0.92355 1.25759 0.95008 0.95655 1.02031 1.70013 1.37225 1.23832 1.24570 0.85478 0.78368 0.78996 0.77982 1.20326 1.20623 1.18652 1.48191 1.48530 1.13316 1.22418 1.21823 1.01558 0.80414 1.02010 1.17755 0.79238 0.86425 0.84767 1.90720 1.60892 1.19242 1.78890 1.22124 1.02557 1.02272 0.94597 1.21856 0.91908 0.98568 0.89416 1.19517 1.02050 0.89953 0.97554 1.27319 1.05597 1.08319 1.00197 1.82535 1.44455 0.99347 1.20876 1.29023 1.00131 1.07147 0.94427 1.66920 1.23250 1.11523 1.18152 0.91134 0.96136 0.93276 0.92534 0.92721 0.90732 0.89192 0.83157 0.84444 0.78335 0.75117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.73 8.95 71.98 0.64 -6.09 16 2 C 0.26 14.37 2.64 44.24 0.12 14.49 16 3 H 0.01 0.67 6.90 -2.38 -0.02 0.65 16 4 C -0.54 -30.96 8.37 25.60 0.21 -30.75 16 5 H 0.06 3.25 7.65 -2.91 -0.02 3.23 16 6 C 0.02 0.85 5.30 84.66 0.45 1.30 16 7 N -0.92 -54.43 11.32 21.45 0.24 -54.19 16 8 Si 0.97 44.33 29.54 68.60 2.03 46.36 16 9 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 12 N -0.60 -27.84 2.75 -837.30 -2.30 -30.14 16 13 C 0.08 3.01 9.37 127.77 1.20 4.20 16 14 C 0.53 24.38 7.45 85.10 0.63 25.01 16 15 O -0.61 -33.45 15.43 -4.53 -0.07 -33.52 16 16 C -0.19 -6.90 8.65 22.43 0.19 -6.71 16 17 C 0.01 0.16 9.52 23.79 0.23 0.39 16 18 C 0.04 1.02 6.66 40.68 0.27 1.29 16 19 C -0.27 -4.74 10.99 67.42 0.74 -4.00 16 20 S 0.27 2.84 22.96 -56.49 -1.30 1.54 16 21 C -0.01 -0.13 12.15 130.71 1.59 1.46 16 22 N -0.48 -11.43 9.96 -192.58 -1.92 -13.34 16 23 H 0.07 3.92 6.07 -2.38 -0.01 3.90 16 24 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.05 2.25 6.66 -2.39 -0.02 2.24 16 26 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 27 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.07 2.61 6.43 -2.38 -0.02 2.60 16 29 H 0.09 2.59 6.08 -2.39 -0.01 2.57 16 30 H 0.15 4.78 5.62 -2.91 -0.02 4.76 16 31 H 0.14 4.40 7.45 -2.91 -0.02 4.38 16 32 H 0.20 2.61 8.06 -2.91 -0.02 2.58 16 33 H 0.23 1.47 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -75.96 296.89 4.08 -71.87 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 1.13 Total: 10.83 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 6.28 Total: 0.59 kcal Atomic # 7 Polarization: -93.69 SS G_CDS: -3.98 Total: -97.67 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -0.07 Total: -33.52 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -1.30 Total: 1.54 kcal Total: -75.96 4.08 -71.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491494933.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.243 kcal (2) G-P(sol) polarization free energy of solvation -75.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds