Wall clock time and date at job start Mon Mar 30 2020 00:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46870 * 2 1 4 4 C 1.50702 * 109.46801 * 120.00469 * 2 1 3 5 5 H 1.08001 * 119.99754 * 120.00211 * 4 2 1 6 6 C 1.37873 * 120.00154 * 299.99792 * 4 2 1 7 7 N 1.31519 * 120.00012 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00313 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47046 * 59.99618 * 8 6 4 10 10 H 1.48494 * 109.47484 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47016 * 300.00220 * 8 6 4 12 12 N 1.46497 * 109.47093 * 240.00286 * 2 1 3 13 13 C 1.46504 * 120.00316 * 300.00301 * 12 2 1 14 14 C 1.34783 * 120.00033 * 120.00005 * 12 2 1 15 15 O 1.21752 * 119.99791 * 359.97438 * 14 12 2 16 16 C 1.41711 * 119.99969 * 180.02562 * 14 12 2 17 17 C 1.35224 * 120.00000 * 188.40411 * 16 14 12 18 18 C 1.46725 * 119.99966 * 30.34510 * 17 16 14 19 19 C 1.36515 * 123.29840 * 185.39430 * 18 17 16 20 20 S 1.70936 * 108.71198 * 180.30347 * 19 18 17 21 21 C 1.70734 * 91.21541 * 359.65768 * 20 19 18 22 22 N 1.28612 * 110.81111 * 0.35292 * 21 20 19 23 23 H 1.08998 * 109.47254 * 299.99847 * 1 2 3 24 24 H 1.08998 * 109.46847 * 59.99577 * 1 2 3 25 25 H 1.09006 * 109.47161 * 179.97438 * 1 2 3 26 26 H 0.96991 * 119.99976 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.46763 * 270.00174 * 13 12 2 28 28 H 1.08994 * 109.46857 * 29.99321 * 13 12 2 29 29 H 1.09003 * 109.47410 * 150.00067 * 13 12 2 30 30 H 1.07995 * 120.00228 * 8.39903 * 16 14 12 31 31 H 1.07998 * 120.00084 * 210.35327 * 17 16 14 32 32 H 1.08003 * 125.64571 * 0.03115 * 19 18 17 33 33 H 1.08000 * 124.59668 * 180.08442 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2396 2.4827 7 7 0.9428 0.8295 2.6035 8 14 2.3223 -1.1198 4.0079 9 1 3.8073 -1.1194 4.0077 10 1 1.8278 -0.4196 5.2204 11 1 1.8279 -2.5201 4.0080 12 7 2.0184 -0.6905 -1.1962 13 6 1.6644 -2.0931 -1.4282 14 6 2.7932 -0.0355 -2.0834 15 8 3.0870 1.1303 -1.8908 16 6 3.2652 -0.7033 -3.2407 17 6 4.1764 -0.1061 -4.0417 18 6 5.1500 0.8326 -3.4726 19 6 6.0279 1.5528 -4.2303 20 16 6.9878 2.5139 -3.1925 21 6 6.1671 1.9160 -1.8200 22 7 5.2648 1.0655 -2.1616 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 0.7081 1.1606 3.4844 27 1 2.4157 -2.7376 -0.9719 28 1 0.6905 -2.3001 -0.9848 29 1 1.6238 -2.2851 -2.5004 30 1 2.8971 -1.6893 -3.4831 31 1 4.1874 -0.3198 -5.1002 32 1 6.1063 1.5177 -5.3069 33 1 6.3798 2.2088 -0.8024 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491494934.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:33 Heat of formation + Delta-G solvation = 64.564049 kcal Electronic energy + Delta-G solvation = -18029.024617 eV Core-core repulsion = 15183.925988 eV Total energy + Delta-G solvation = -2845.098628 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.76658 -38.52286 -35.19451 -33.13329 -32.57606 -29.99234 -28.96973 -26.01804 -25.17928 -24.95086 -23.49695 -20.71914 -19.39065 -18.30852 -16.94185 -16.86635 -16.16228 -15.49244 -14.96257 -14.27174 -14.15243 -14.01345 -13.31070 -13.13399 -13.04355 -12.53806 -12.34328 -12.09903 -11.50355 -11.44025 -11.15272 -10.97314 -10.74301 -10.60261 -10.17452 -10.06734 -9.72065 -9.37666 -9.23599 -9.04336 -8.66928 -8.32316 -7.79639 -7.29773 -5.97492 -4.04239 0.60863 1.58950 1.64951 1.99884 3.33138 3.37577 3.40169 3.48911 4.22600 4.32848 4.50582 4.51288 5.12322 5.27601 5.32578 5.39646 5.53006 5.62774 5.91557 6.16688 6.23357 6.40380 6.46615 6.50988 6.86587 6.94272 7.18510 7.62287 7.68553 7.84491 8.08934 8.15061 8.33290 8.74305 8.96704 9.34231 9.62300 11.07724 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.022308 B = 0.005807 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.828150 B = 4820.818449 C = 5539.899809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.261 3.739 3 H 0.063 0.937 4 C -0.517 4.517 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.278 1.278 12 N -0.593 5.593 13 C 0.088 3.912 14 C 0.530 3.470 15 O -0.523 6.523 16 C -0.175 4.175 17 C -0.031 4.031 18 C 0.089 3.911 19 C -0.286 4.286 20 S 0.135 5.865 21 C 0.009 3.991 22 N -0.385 5.385 23 H 0.092 0.908 24 H 0.009 0.991 25 H 0.028 0.972 26 H 0.262 0.738 27 H 0.045 0.955 28 H 0.069 0.931 29 H 0.051 0.949 30 H 0.134 0.866 31 H 0.139 0.861 32 H 0.174 0.826 33 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.401 -1.526 -13.440 15.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.160 3.840 3 H 0.080 0.920 4 C -0.556 4.556 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.325 5.325 13 C -0.056 4.056 14 C 0.320 3.680 15 O -0.401 6.401 16 C -0.199 4.199 17 C -0.053 4.053 18 C -0.044 4.044 19 C -0.426 4.426 20 S 0.390 5.610 21 C -0.292 4.292 22 N -0.096 5.096 23 H 0.110 0.890 24 H 0.029 0.971 25 H 0.047 0.953 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.152 0.848 31 H 0.157 0.843 32 H 0.191 0.809 33 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 8.931 -0.321 -12.832 15.637 hybrid contribution -0.487 -1.230 0.552 1.434 sum 8.444 -1.551 -12.280 14.983 Atomic orbital electron populations 1.22100 0.98638 0.99161 1.00652 1.18831 0.90460 0.94573 0.80130 0.91961 1.21298 1.31253 1.12709 0.90344 0.92505 1.24883 0.95117 0.95036 0.98847 1.69877 1.36688 1.22782 1.23609 0.86584 0.79215 0.79574 0.82153 1.20345 1.21260 1.20318 1.48150 1.49856 1.11127 1.23357 1.21545 1.01294 0.83730 0.99046 1.16938 0.80352 0.87513 0.83227 1.90765 1.56543 1.17009 1.75813 1.22567 0.99848 0.99343 0.98104 1.21612 0.92499 0.93382 0.97856 1.19730 0.97776 0.99326 0.87540 1.26715 1.04974 1.05620 1.05293 1.82583 1.36323 1.42280 0.99806 1.28573 0.96649 1.00045 1.03968 1.67265 1.13111 1.14304 1.14889 0.88965 0.97146 0.95259 0.92813 0.93599 0.91185 0.93031 0.84843 0.84304 0.80867 0.78841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 8.95 37.16 0.33 -3.33 16 2 C 0.26 6.97 2.64 -69.08 -0.18 6.78 16 3 H 0.06 1.93 6.90 -51.93 -0.36 1.58 16 4 C -0.52 -14.55 8.37 -34.44 -0.29 -14.84 16 5 H 0.06 1.59 7.65 -52.49 -0.40 1.19 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.95 11.32 55.43 0.63 -25.32 16 8 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.59 -13.45 2.75 -178.64 -0.49 -13.94 16 13 C 0.09 1.57 9.42 59.85 0.56 2.13 16 14 C 0.53 11.75 6.84 -14.93 -0.10 11.64 16 15 O -0.52 -13.41 12.29 5.14 0.06 -13.35 16 16 C -0.18 -2.92 9.03 -39.33 -0.36 -3.28 16 17 C -0.03 -0.46 9.88 -37.23 -0.37 -0.82 16 18 C 0.09 1.48 5.99 -84.27 -0.50 0.98 16 19 C -0.29 -3.73 10.99 30.11 0.33 -3.40 16 20 S 0.14 1.62 22.96 -107.50 -2.47 -0.84 16 21 C 0.01 0.14 12.16 51.41 0.62 0.77 16 22 N -0.38 -7.57 6.90 -12.22 -0.08 -7.65 16 23 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 24 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 25 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 26 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.25 6.43 -51.93 -0.33 0.92 16 29 H 0.05 0.72 5.99 -51.93 -0.31 0.41 16 30 H 0.13 1.75 6.03 -52.49 -0.32 1.43 16 31 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 32 H 0.17 1.66 8.06 -52.48 -0.42 1.24 16 33 H 0.19 2.72 8.06 -52.49 -0.42 2.30 16 LS Contribution 291.13 15.07 4.39 4.39 Total: -1.00 -34.37 291.13 -6.66 -41.03 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -3.63 Total: 0.72 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -0.04 Total: -1.70 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 0.05 Total: -46.91 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.06 Total: -13.35 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.47 Total: -0.84 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -34.37 -6.66 -41.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491494934.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.591 kcal (2) G-P(sol) polarization free energy of solvation -34.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds