Wall clock time and date at job start Mon Mar 30 2020 00:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29358 * 124.67242 * 2 1 4 4 C 1.30954 * 117.49299 * 179.97438 * 3 2 1 5 5 C 1.37070 * 113.84722 * 0.27245 * 4 3 2 6 6 C 1.41724 * 126.19245 * 179.69179 * 5 4 3 7 7 C 1.35563 * 120.00109 * 131.62993 * 6 5 4 8 8 C 1.41546 * 119.99769 * 345.61427 * 7 6 5 9 9 O 1.21777 * 120.00182 * 353.26101 * 8 7 6 10 10 N 1.34785 * 119.99617 * 173.26759 * 8 7 6 11 11 C 1.46495 * 120.00172 * 359.97438 * 10 8 7 12 12 C 1.46498 * 119.99449 * 179.97438 * 10 8 7 13 13 C 1.50707 * 109.46915 * 90.00033 * 12 10 8 14 14 H 1.08002 * 120.00149 * 359.97438 * 13 12 10 15 15 C 1.37880 * 119.99782 * 179.97438 * 13 12 10 16 16 N 1.31515 * 119.99962 * 179.97438 * 15 13 12 17 17 Si 1.86807 * 120.00126 * 359.97438 * 15 13 12 18 18 H 1.48506 * 109.46655 * 90.00343 * 17 15 13 19 19 H 1.48500 * 109.47079 * 210.00074 * 17 15 13 20 20 H 1.48500 * 109.46948 * 330.00759 * 17 15 13 21 21 S 1.70913 * 124.67310 * 179.97438 * 2 1 3 22 22 H 1.08996 * 109.47241 * 90.02535 * 1 2 3 23 23 H 1.08996 * 109.47219 * 210.02631 * 1 2 3 24 24 H 1.08998 * 109.47381 * 330.03077 * 1 2 3 25 25 H 1.07996 * 123.07872 * 179.97438 * 4 3 2 26 26 H 1.08002 * 120.00247 * 311.62143 * 6 5 4 27 27 H 1.08002 * 120.00096 * 165.61745 * 7 6 5 28 28 H 1.09000 * 109.46523 * 90.00652 * 11 10 8 29 29 H 1.09002 * 109.47219 * 210.00160 * 11 10 8 30 30 H 1.08995 * 109.47517 * 330.00838 * 11 10 8 31 31 H 1.08997 * 109.46979 * 209.99517 * 12 10 8 32 32 H 1.08999 * 109.47713 * 329.99892 * 12 10 8 33 33 H 0.97001 * 119.99901 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2429 1.0639 0.0000 4 6 3.5422 0.9002 0.0005 5 6 3.9353 -0.4129 -0.0050 6 6 5.2710 -0.8865 -0.0119 7 6 5.6529 -1.8507 0.8612 8 6 4.8301 -2.1694 1.9679 9 8 3.8427 -1.4976 2.2060 10 7 5.1395 -3.2164 2.7582 11 6 6.3271 -4.0248 2.4715 12 6 4.2882 -3.5459 3.9040 13 6 3.2159 -4.5126 3.4715 14 1 3.1727 -4.8476 2.4457 15 6 2.2900 -4.9693 4.3855 16 7 1.3540 -5.8125 4.0080 17 14 2.3652 -4.3904 6.1600 18 1 1.5443 -3.1627 6.3153 19 1 1.8372 -5.4549 7.0507 20 1 3.7738 -4.0933 6.5245 21 16 2.4793 -1.4056 0.0006 22 1 -0.3633 -0.0005 -1.0276 23 1 -0.3633 -0.8897 0.5142 24 1 -0.3634 0.8902 0.5133 25 1 4.2401 1.7244 0.0002 26 1 5.9847 -0.4795 -0.7129 27 1 6.5850 -2.3756 0.7123 28 1 7.1860 -3.6079 2.9975 29 1 6.1588 -5.0488 2.8051 30 1 6.5202 -4.0192 1.3988 31 1 4.8937 -4.0017 4.6874 32 1 3.8247 -2.6363 4.2859 33 1 0.7029 -6.1340 4.6511 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491874053.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:41 Heat of formation + Delta-G solvation = 21.058266 kcal Electronic energy + Delta-G solvation = -17850.506517 eV Core-core repulsion = 15003.521336 eV Total energy + Delta-G solvation = -2846.985181 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.04656 -40.26946 -36.81283 -35.24130 -34.67068 -32.41776 -30.70044 -28.77169 -27.32408 -25.54119 -24.65089 -22.75193 -20.81977 -19.60924 -19.12312 -18.49503 -18.15778 -17.01162 -16.36417 -16.19823 -15.83981 -15.43771 -14.96748 -14.77940 -14.37067 -14.28922 -13.77784 -13.71497 -13.64019 -13.42859 -13.16709 -12.98824 -12.73338 -12.48889 -12.41304 -12.05259 -11.74584 -11.18801 -10.82949 -10.64120 -10.43977 -9.74587 -9.25040 -9.07279 -8.33500 -6.37102 -0.73527 0.42346 0.71358 1.06586 1.30381 1.33977 1.42106 1.92108 2.29546 2.47842 2.59377 3.00904 3.34785 3.95721 4.04277 4.16505 4.39531 4.43419 4.58441 4.60984 4.61801 4.68256 4.80181 4.93053 4.96712 4.97592 5.14090 5.25971 5.42994 5.46793 5.68326 6.26269 6.63655 6.76295 6.82668 7.23254 7.47456 8.83148 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.018828 B = 0.007205 C = 0.005785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.783915 B = 3885.165098 C = 4838.705235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.009 3.991 3 N -0.503 5.503 4 C 0.048 3.952 5 C -0.214 4.214 6 C 0.018 3.982 7 C -0.215 4.215 8 C 0.513 3.487 9 O -0.579 6.579 10 N -0.606 5.606 11 C 0.076 3.924 12 C 0.225 3.775 13 C -0.528 4.528 14 H 0.031 0.969 15 C 0.014 3.986 16 N -0.943 5.943 17 Si 0.942 3.058 18 H -0.280 1.280 19 H -0.274 1.274 20 H -0.241 1.241 21 S 0.172 5.828 22 H 0.107 0.893 23 H 0.076 0.924 24 H 0.092 0.908 25 H 0.202 0.798 26 H 0.196 0.804 27 H 0.177 0.823 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.015 0.985 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.818 9.363 -9.169 16.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.263 4.263 3 N -0.219 5.219 4 C -0.108 4.108 5 C -0.336 4.336 6 C -0.004 4.004 7 C -0.239 4.239 8 C 0.306 3.694 9 O -0.462 6.462 10 N -0.336 5.336 11 C -0.066 4.066 12 C 0.103 3.897 13 C -0.566 4.566 14 H 0.049 0.951 15 C -0.184 4.184 16 N -0.583 5.583 17 Si 0.765 3.235 18 H -0.206 1.206 19 H -0.199 1.199 20 H -0.164 1.164 21 S 0.432 5.568 22 H 0.125 0.875 23 H 0.095 0.905 24 H 0.110 0.890 25 H 0.218 0.782 26 H 0.213 0.787 27 H 0.194 0.806 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.586 8.975 -8.965 15.318 hybrid contribution 0.008 0.391 1.065 1.135 sum 8.595 9.367 -7.900 14.967 Atomic orbital electron populations 1.20517 0.83854 1.04288 1.04956 1.27567 1.03085 0.91327 1.04359 1.65933 1.06104 1.31849 1.17973 1.22704 0.90980 0.95379 1.01751 1.24016 0.99117 0.96671 1.13826 1.21087 0.91097 0.91824 0.96348 1.22599 1.03659 1.02032 0.95571 1.17961 0.85441 0.80805 0.85221 1.90877 1.29466 1.52420 1.73433 1.47933 1.27251 1.29294 1.29162 1.21987 0.86122 0.95587 1.02888 1.19264 0.90015 0.94560 0.85897 1.21507 1.12896 1.25816 0.96419 0.95079 1.25758 0.94396 0.94662 1.03567 1.70038 1.17619 1.33798 1.36843 0.85806 0.80231 0.78072 0.79378 1.20554 1.19934 1.16444 1.84394 0.98212 1.11891 1.62330 0.87474 0.90490 0.88963 0.78150 0.78741 0.80558 0.90346 0.91796 0.88971 0.93732 0.96718 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.04 10.46 71.24 0.74 -1.29 16 2 C 0.01 0.33 7.37 88.47 0.65 0.98 16 3 N -0.50 -17.39 10.50 -189.30 -1.99 -19.38 16 4 C 0.05 1.46 11.38 84.55 0.96 2.42 16 5 C -0.21 -6.75 4.36 22.86 0.10 -6.65 16 6 C 0.02 0.43 9.90 22.51 0.22 0.65 16 7 C -0.21 -5.79 9.00 22.47 0.20 -5.59 16 8 C 0.51 20.41 7.00 85.06 0.60 21.01 16 9 O -0.58 -27.94 11.94 -4.59 -0.05 -28.00 16 10 N -0.61 -24.47 2.86 -861.89 -2.46 -26.93 16 11 C 0.08 2.12 10.07 127.77 1.29 3.41 16 12 C 0.23 11.07 4.23 85.64 0.36 11.43 16 13 C -0.53 -30.97 9.94 25.60 0.25 -30.71 16 14 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16 15 C 0.01 0.84 5.47 84.66 0.46 1.30 16 16 N -0.94 -59.35 13.96 21.45 0.30 -59.05 16 17 Si 0.94 44.95 27.47 68.60 1.88 46.83 16 18 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 19 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.24 -10.43 6.54 99.48 0.65 -9.78 16 21 S 0.17 6.36 20.32 -56.49 -1.15 5.22 16 22 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 23 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.09 2.29 8.14 -2.39 -0.02 2.28 16 25 H 0.20 4.57 8.06 -2.91 -0.02 4.55 16 26 H 0.20 2.45 8.06 -2.91 -0.02 2.42 16 27 H 0.18 3.12 6.21 -2.91 -0.02 3.11 16 28 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.06 1.93 8.07 -2.39 -0.02 1.91 16 30 H 0.09 1.97 6.18 -2.39 -0.01 1.96 16 31 H 0.04 2.03 7.13 -2.39 -0.02 2.01 16 32 H 0.01 0.79 6.85 -2.39 -0.02 0.77 16 33 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -80.32 296.48 3.44 -76.88 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 1.06 Total: 7.47 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 5.85 Total: -3.04 kcal Atomic # 7 Polarization: -101.21 SS G_CDS: -4.15 Total: -105.36 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.05 Total: -28.00 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.83 kcal Atomic # 16 Polarization: 6.36 SS G_CDS: -1.15 Total: 5.22 kcal Total: -80.32 3.44 -76.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491874053.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.938 kcal (2) G-P(sol) polarization free energy of solvation -80.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds