Wall clock time and date at job start Mon Mar 30 2020 00:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29367 * 124.67193 * 2 1 4 4 C 1.30952 * 117.48871 * 179.72539 * 3 2 1 5 5 C 1.37071 * 113.84996 * 0.52269 * 4 3 2 6 6 C 1.41728 * 126.19024 * 179.78551 * 5 4 3 7 7 C 1.35557 * 119.99726 * 224.48647 * 6 5 4 8 8 C 1.41538 * 120.00432 * 9.64881 * 7 6 5 9 9 O 1.21779 * 119.99727 * 6.53832 * 8 7 6 10 10 N 1.34778 * 120.00445 * 186.53610 * 8 7 6 11 11 C 1.46502 * 120.00136 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46652 * 180.02562 * 11 10 8 13 13 C 1.50703 * 109.46729 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00072 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99960 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99776 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99930 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46955 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47063 * 119.99694 * 17 15 13 20 20 H 1.48494 * 109.46938 * 239.99934 * 17 15 13 21 21 S 1.70906 * 124.67820 * 180.02562 * 2 1 3 22 22 H 1.09001 * 109.47305 * 269.97901 * 1 2 3 23 23 H 1.09003 * 109.47255 * 29.97868 * 1 2 3 24 24 H 1.09003 * 109.46867 * 149.97746 * 1 2 3 25 25 H 1.08005 * 123.07527 * 180.35222 * 4 3 2 26 26 H 1.07995 * 119.99887 * 44.49134 * 6 5 4 27 27 H 1.08008 * 119.99769 * 189.64668 * 7 6 5 28 28 H 0.96997 * 119.99697 * 0.02562 * 10 8 7 29 29 H 1.09004 * 109.47113 * 300.00199 * 11 10 8 30 30 H 1.08995 * 109.46800 * 60.00320 * 11 10 8 31 31 H 1.08992 * 109.47322 * 299.99483 * 12 11 10 32 32 H 1.09003 * 109.47034 * 60.00495 * 12 11 10 33 33 H 0.97008 * 119.99716 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2429 1.0639 0.0000 4 6 3.5421 0.9002 0.0056 5 6 3.9353 -0.4129 -0.0007 6 6 5.2711 -0.8865 -0.0012 7 6 5.6312 -1.8980 -0.8287 8 6 4.7379 -2.3440 -1.8318 9 8 3.6969 -1.7441 -2.0305 10 7 5.0392 -3.4326 -2.5672 11 6 4.1142 -3.8945 -3.6051 12 6 4.6903 -5.1384 -4.2846 13 6 3.7390 -5.6132 -5.3527 14 1 2.8158 -5.0812 -5.5289 15 6 4.0469 -6.7274 -6.1043 16 7 5.1709 -7.3754 -5.8894 17 14 2.8674 -7.3163 -7.4278 18 1 1.6838 -6.4204 -7.4703 19 1 3.5515 -7.2947 -8.7457 20 1 2.4297 -8.7014 -7.1199 21 16 2.4794 -1.4055 -0.0006 22 1 -0.3634 -0.0004 1.0277 23 1 -0.3634 0.8902 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 4.2401 1.7244 0.0116 26 1 6.0020 -0.4415 0.6577 27 1 6.6000 -2.3637 -0.7225 28 1 5.8682 -3.9106 -2.4086 29 1 3.1535 -4.1401 -3.1524 30 1 3.9761 -3.1066 -4.3454 31 1 5.6509 -4.8932 -4.7372 32 1 4.8279 -5.9262 -3.5439 33 1 5.3873 -8.1595 -6.4180 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492467516.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:44 Heat of formation + Delta-G solvation = 23.334117 kcal Electronic energy + Delta-G solvation = -17030.808807 eV Core-core repulsion = 14183.922315 eV Total energy + Delta-G solvation = -2846.886492 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.84831 -39.15646 -35.25641 -34.05464 -32.88873 -31.47346 -29.83919 -27.79776 -25.13166 -23.96781 -22.64730 -20.89640 -20.15706 -19.27603 -17.57994 -16.97418 -16.31874 -15.39875 -15.17257 -14.83354 -14.69952 -14.40265 -13.88936 -13.47267 -13.26939 -13.08493 -12.80138 -12.49185 -12.30884 -12.12405 -11.49269 -11.21846 -11.07940 -10.65259 -10.39765 -10.35989 -9.73769 -9.52761 -9.41795 -9.23653 -8.78765 -8.45582 -8.12097 -7.96496 -6.11546 -4.14323 0.21255 1.47199 1.80132 2.05703 2.97748 3.26782 3.34450 3.39296 3.63691 3.85248 4.29678 4.40877 4.91067 5.06980 5.10667 5.25758 5.36091 5.38154 5.44602 5.48358 5.79920 6.04182 6.06445 6.31977 6.32988 6.42512 6.71873 6.90271 7.49777 7.59319 7.86769 7.90840 8.00096 8.25652 8.62348 8.91932 9.50755 11.00119 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.028841 B = 0.004004 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.612018 B = 6991.672112 C = 7739.864273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.003 3.997 3 N -0.488 5.488 4 C 0.063 3.937 5 C -0.229 4.229 6 C 0.008 3.992 7 C -0.207 4.207 8 C 0.521 3.479 9 O -0.542 6.542 10 N -0.713 5.713 11 C 0.122 3.878 12 C 0.012 3.988 13 C -0.521 4.521 14 H 0.059 0.941 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.896 3.104 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 S 0.259 5.741 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.171 0.829 26 H 0.142 0.858 27 H 0.135 0.865 28 H 0.397 0.603 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.344 11.816 14.899 19.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.269 4.269 3 N -0.203 5.203 4 C -0.095 4.095 5 C -0.351 4.351 6 C -0.015 4.015 7 C -0.232 4.232 8 C 0.310 3.690 9 O -0.424 6.424 10 N -0.361 5.361 11 C -0.001 4.001 12 C -0.026 4.026 13 C -0.560 4.560 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.724 3.276 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 S 0.520 5.480 22 H 0.099 0.901 23 H 0.103 0.897 24 H 0.097 0.903 25 H 0.188 0.812 26 H 0.159 0.841 27 H 0.153 0.847 28 H 0.231 0.769 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.607 11.454 14.665 18.790 hybrid contribution 0.790 0.056 -0.906 1.204 sum -1.817 11.510 13.759 18.030 Atomic orbital electron populations 1.20377 0.85859 1.04080 1.03221 1.27200 1.01894 0.92723 1.05105 1.65905 1.05108 1.31839 1.17480 1.22230 0.91004 0.94596 1.01689 1.23734 0.98714 0.97226 1.15471 1.20490 0.92132 0.93181 0.95658 1.22346 1.01866 1.00763 0.98193 1.17295 0.86659 0.81482 0.83547 1.90914 1.25987 1.56521 1.69006 1.46372 1.24377 1.28500 1.36892 1.21708 0.92036 0.98157 0.88157 1.19333 0.96974 0.90761 0.95514 1.21087 1.05437 1.11680 1.17760 0.92229 1.24995 0.95394 0.96447 0.97433 1.69964 1.23230 1.19419 1.40695 0.86466 0.81079 0.78638 0.81454 1.19581 1.20920 1.20905 1.83687 0.95149 1.09756 1.59398 0.90135 0.89698 0.90259 0.81213 0.84091 0.84725 0.76910 0.92518 0.92553 0.95976 0.95955 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.46 36.00 0.38 -0.39 16 2 C 0.00 0.04 7.37 -13.32 -0.10 -0.06 16 3 N -0.49 -7.33 10.50 -11.18 -0.12 -7.45 16 4 C 0.06 0.85 11.38 -18.35 -0.21 0.65 16 5 C -0.23 -3.12 4.67 -38.67 -0.18 -3.30 16 6 C 0.01 0.08 9.93 -39.21 -0.39 -0.30 16 7 C -0.21 -2.53 9.82 -39.28 -0.39 -2.91 16 8 C 0.52 8.58 7.14 -15.00 -0.11 8.47 16 9 O -0.54 -10.42 11.51 5.12 0.06 -10.36 16 10 N -0.71 -12.20 5.55 -63.24 -0.35 -12.55 16 11 C 0.12 2.56 5.61 -4.04 -0.02 2.54 16 12 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 13 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 14 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 17 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 S 0.26 3.67 19.44 -107.50 -2.09 1.58 16 22 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.17 1.82 8.06 -52.48 -0.42 1.39 16 26 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 27 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 28 H 0.40 5.86 8.43 -40.82 -0.34 5.52 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 302.82 15.07 4.56 4.56 Total: -1.00 -32.88 302.82 -7.90 -40.78 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -4.11 Total: 0.76 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -1.57 Total: -8.31 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.27 Total: -45.27 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.06 Total: -10.36 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 3.67 SS G_CDS: -2.09 Total: 1.58 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.88 -7.90 -40.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492467516.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.112 kcal (2) G-P(sol) polarization free energy of solvation -32.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds