Wall clock time and date at job start Mon Mar 30 2020 00:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47135 * 2 1 4 4 H 1.09003 * 109.46963 * 55.00609 * 3 2 1 5 5 C 1.50699 * 109.47126 * 174.99934 * 3 2 1 6 6 H 1.08007 * 120.00164 * 120.00494 * 5 3 2 7 7 C 1.37876 * 120.00400 * 300.00529 * 5 3 2 8 8 N 1.31512 * 119.99908 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00406 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46961 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47317 * 119.99756 * 9 7 5 12 12 H 1.48496 * 109.47062 * 240.00020 * 9 7 5 13 13 N 1.46495 * 109.47477 * 295.00268 * 3 2 1 14 14 C 1.34772 * 120.00296 * 84.99928 * 13 3 2 15 15 O 1.21766 * 119.99775 * 359.97438 * 14 13 3 16 16 C 1.41709 * 120.00531 * 180.02562 * 14 13 3 17 17 C 1.35221 * 120.00225 * 197.47126 * 16 14 13 18 18 C 1.46717 * 120.00183 * 30.39534 * 17 16 14 19 19 C 1.36522 * 123.30232 * 187.08644 * 18 17 16 20 20 S 1.70935 * 108.71335 * 179.97438 * 19 18 17 21 21 C 1.70726 * 91.21677 * 359.97438 * 20 19 18 22 22 N 1.28611 * 110.81113 * 359.73132 * 21 20 19 23 23 H 1.08999 * 109.47486 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47300 * 59.99515 * 1 2 3 25 25 H 1.09006 * 109.47018 * 299.99912 * 1 2 3 26 26 H 1.08998 * 109.47300 * 120.00485 * 2 1 3 27 27 H 1.08997 * 109.46940 * 240.00318 * 2 1 3 28 28 H 0.97003 * 120.00655 * 180.02562 * 8 7 5 29 29 H 0.97008 * 120.00134 * 265.00094 * 13 3 2 30 30 H 1.08007 * 119.99807 * 17.47379 * 16 14 13 31 31 H 1.08009 * 120.00287 * 210.39211 * 17 16 14 32 32 H 1.08006 * 125.64426 * 0.02562 * 19 18 17 33 33 H 1.08000 * 124.59742 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5418 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8799 1.3811 10 1 6.5988 1.5441 0.1930 11 1 6.4000 1.6155 2.6091 12 1 6.4961 -0.5191 1.4625 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6644 -1.3669 15 8 -0.3427 2.6318 -0.4306 16 6 0.0600 3.2976 -2.5778 17 6 -0.9828 4.1583 -2.5960 18 6 -1.3022 4.9491 -1.4022 19 6 -2.4167 5.7305 -1.2968 20 16 -2.4183 6.4792 0.2399 21 6 -0.9480 5.7163 0.6534 22 7 -0.5343 4.9696 -0.3086 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.8932 -0.5138 -0.8900 28 1 3.8293 -0.0606 2.9502 29 1 2.2719 2.1232 -1.9978 30 1 0.6070 3.0927 -3.4863 31 1 -1.5806 4.2637 -3.4894 32 1 -3.1729 5.8544 -2.0580 33 1 -0.4367 5.8405 1.5966 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492583632.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:54 Heat of formation + Delta-G solvation = 42.001138 kcal Electronic energy + Delta-G solvation = -17965.300339 eV Core-core repulsion = 15119.223310 eV Total energy + Delta-G solvation = -2846.077030 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.77370 -38.49269 -35.00845 -32.98283 -32.19437 -30.82670 -29.62180 -26.98411 -25.05825 -23.66380 -22.48483 -20.33880 -19.34807 -18.94858 -17.74798 -16.72187 -16.00311 -15.36433 -14.99587 -14.28257 -14.20010 -14.06059 -13.44308 -13.16187 -13.08182 -12.54411 -12.38106 -11.92604 -11.40389 -11.35823 -11.16858 -10.87839 -10.75894 -10.22516 -10.05385 -9.77829 -9.53877 -9.43268 -9.30530 -8.91873 -8.77756 -8.39499 -7.87862 -7.52741 -6.03850 -4.11878 0.57683 1.56236 1.58772 1.93316 3.28015 3.35693 3.38285 3.39460 4.27768 4.36681 4.44555 4.65976 5.09455 5.26615 5.27968 5.36843 5.60142 5.77585 6.21604 6.43754 6.48157 6.53086 6.56284 6.77610 7.15190 7.32903 7.49967 7.66715 7.74286 7.89163 7.99275 8.05366 8.29934 8.87309 8.94248 9.40495 9.57978 11.01640 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.025776 B = 0.005152 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.000042 B = 5432.977819 C = 5766.966154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.127 4.127 3 C 0.273 3.727 4 H 0.049 0.951 5 C -0.528 4.528 6 H 0.060 0.940 7 C 0.065 3.935 8 N -0.884 5.884 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.708 5.708 14 C 0.534 3.466 15 O -0.528 6.528 16 C -0.172 4.172 17 C -0.033 4.033 18 C 0.093 3.907 19 C -0.287 4.287 20 S 0.145 5.855 21 C 0.011 3.989 22 N -0.401 5.401 23 H 0.019 0.981 24 H 0.039 0.961 25 H 0.048 0.952 26 H 0.096 0.904 27 H 0.028 0.972 28 H 0.262 0.738 29 H 0.384 0.616 30 H 0.131 0.869 31 H 0.139 0.861 32 H 0.174 0.826 33 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.882 10.209 -7.762 16.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.567 4.567 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.522 5.522 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.356 5.356 14 C 0.321 3.679 15 O -0.407 6.407 16 C -0.195 4.195 17 C -0.056 4.056 18 C -0.040 4.040 19 C -0.427 4.427 20 S 0.400 5.600 21 C -0.290 4.290 22 N -0.112 5.112 23 H 0.038 0.962 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.115 0.885 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.216 0.784 30 H 0.149 0.851 31 H 0.156 0.844 32 H 0.192 0.808 33 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -10.540 10.458 -6.247 16.109 hybrid contribution 1.535 -0.696 -1.033 1.977 sum -9.005 9.762 -7.280 15.146 Atomic orbital electron populations 1.21815 0.98431 0.97667 1.01230 1.21925 0.92547 1.00102 1.01983 1.18676 0.93850 0.88902 0.81523 0.93337 1.21309 0.91017 1.38301 1.06036 0.92226 1.24878 0.98382 0.95004 0.95484 1.69913 1.34860 1.38066 1.09359 0.86445 0.85238 0.77666 0.78043 1.19798 1.20973 1.20971 1.46436 1.14438 1.56579 1.18165 1.16875 0.83161 0.80333 0.87493 1.90775 1.51216 1.59360 1.39348 1.22509 0.98036 0.99005 1.00000 1.21541 0.95318 0.94263 0.94445 1.19683 0.91485 0.98637 0.94150 1.26715 1.04251 1.07933 1.03847 1.82597 1.24645 1.45094 1.07698 1.28486 0.98040 0.98820 1.03649 1.67095 1.30864 1.13969 0.99235 0.96204 0.94235 0.93318 0.88539 0.95275 0.92795 0.78404 0.85133 0.84361 0.80817 0.78776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.51 37.15 0.32 -2.82 16 2 C -0.13 -3.20 5.45 -26.74 -0.15 -3.34 16 3 C 0.27 7.10 2.24 -69.09 -0.15 6.95 16 4 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16 5 C -0.53 -14.37 8.73 -34.44 -0.30 -14.67 16 6 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -25.37 11.29 55.43 0.63 -24.75 16 9 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 10 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.71 -15.44 5.01 -57.81 -0.29 -15.73 16 14 C 0.53 11.11 5.21 -14.94 -0.08 11.03 16 15 O -0.53 -12.62 10.87 5.13 0.06 -12.56 16 16 C -0.17 -2.73 9.73 -39.33 -0.38 -3.11 16 17 C -0.03 -0.47 9.84 -37.23 -0.37 -0.84 16 18 C 0.09 1.48 5.95 -84.27 -0.50 0.98 16 19 C -0.29 -3.59 10.99 30.11 0.33 -3.26 16 20 S 0.14 1.64 22.96 -107.50 -2.47 -0.82 16 21 C 0.01 0.16 12.15 51.41 0.62 0.79 16 22 N -0.40 -7.42 7.35 -12.22 -0.09 -7.51 16 23 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.04 0.90 5.64 -51.93 -0.29 0.61 16 25 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 26 H 0.10 2.68 5.95 -51.93 -0.31 2.38 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 29 H 0.38 7.37 8.50 -40.82 -0.35 7.03 16 30 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 31 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.17 1.61 8.06 -52.48 -0.42 1.18 16 33 H 0.20 2.50 8.06 -52.49 -0.42 2.08 16 LS Contribution 292.50 15.07 4.41 4.41 Total: -1.00 -33.02 292.50 -7.36 -40.38 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -3.83 Total: 7.13 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -0.75 Total: -6.60 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: 0.25 Total: -47.99 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.06 Total: -12.56 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.47 Total: -0.82 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.02 -7.36 -40.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492583632.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.382 kcal (2) G-P(sol) polarization free energy of solvation -33.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds