Wall clock time and date at job start Mon Mar 30 2020 00:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47135 * 2 1 4 4 H 1.09003 * 109.46963 * 55.00609 * 3 2 1 5 5 C 1.50699 * 109.47126 * 174.99934 * 3 2 1 6 6 H 1.08007 * 120.00164 * 120.00494 * 5 3 2 7 7 C 1.37876 * 120.00400 * 300.00529 * 5 3 2 8 8 N 1.31512 * 119.99908 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00406 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46961 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47317 * 119.99756 * 9 7 5 12 12 H 1.48496 * 109.47062 * 240.00020 * 9 7 5 13 13 N 1.46495 * 109.47477 * 295.00268 * 3 2 1 14 14 C 1.34772 * 120.00296 * 84.99928 * 13 3 2 15 15 O 1.21766 * 119.99775 * 359.97438 * 14 13 3 16 16 C 1.41709 * 120.00531 * 180.02562 * 14 13 3 17 17 C 1.35221 * 120.00225 * 197.47126 * 16 14 13 18 18 C 1.46717 * 120.00183 * 30.39534 * 17 16 14 19 19 C 1.36522 * 123.30232 * 187.08644 * 18 17 16 20 20 S 1.70935 * 108.71335 * 179.97438 * 19 18 17 21 21 C 1.70726 * 91.21677 * 359.97438 * 20 19 18 22 22 N 1.28611 * 110.81113 * 359.73132 * 21 20 19 23 23 H 1.08999 * 109.47486 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47300 * 59.99515 * 1 2 3 25 25 H 1.09006 * 109.47018 * 299.99912 * 1 2 3 26 26 H 1.08998 * 109.47300 * 120.00485 * 2 1 3 27 27 H 1.08997 * 109.46940 * 240.00318 * 2 1 3 28 28 H 0.97003 * 120.00655 * 180.02562 * 8 7 5 29 29 H 0.97008 * 120.00134 * 265.00094 * 13 3 2 30 30 H 1.08007 * 119.99807 * 17.47379 * 16 14 13 31 31 H 1.08009 * 120.00287 * 210.39211 * 17 16 14 32 32 H 1.08006 * 125.64426 * 0.02562 * 19 18 17 33 33 H 1.08000 * 124.59742 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5418 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8799 1.3811 10 1 6.5988 1.5441 0.1930 11 1 6.4000 1.6155 2.6091 12 1 6.4961 -0.5191 1.4625 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6644 -1.3669 15 8 -0.3427 2.6318 -0.4306 16 6 0.0600 3.2976 -2.5778 17 6 -0.9828 4.1583 -2.5960 18 6 -1.3022 4.9491 -1.4022 19 6 -2.4167 5.7305 -1.2968 20 16 -2.4183 6.4792 0.2399 21 6 -0.9480 5.7163 0.6534 22 7 -0.5343 4.9696 -0.3086 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.8932 -0.5138 -0.8900 28 1 3.8293 -0.0606 2.9502 29 1 2.2719 2.1232 -1.9978 30 1 0.6070 3.0927 -3.4863 31 1 -1.5806 4.2637 -3.4894 32 1 -3.1729 5.8544 -2.0580 33 1 -0.4367 5.8405 1.5966 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492583632.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:54 Heat of formation + Delta-G solvation = 18.884651 kcal Electronic energy + Delta-G solvation = -17966.302745 eV Core-core repulsion = 15119.223310 eV Total energy + Delta-G solvation = -2847.079436 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.05331 -39.95251 -36.87586 -34.23894 -34.16820 -32.66875 -30.79783 -28.94821 -26.24835 -25.30311 -24.16640 -21.88159 -21.09002 -20.26866 -19.16714 -18.08279 -17.65326 -17.07059 -16.56949 -15.93976 -15.76835 -15.33747 -14.84746 -14.66800 -14.24290 -14.10038 -13.77245 -13.69347 -13.34034 -13.15062 -12.83119 -12.68573 -12.39656 -12.13322 -12.00171 -11.57478 -11.00723 -10.88398 -10.58537 -10.47721 -10.41036 -10.32256 -9.37768 -8.94181 -8.14149 -6.30816 -0.48636 0.42831 0.59533 0.89773 1.42599 1.43167 1.55640 2.21705 2.39747 2.84443 3.04513 3.16169 3.45846 4.09497 4.25972 4.42468 4.45166 4.50122 4.58752 4.64907 4.79469 5.06427 5.12662 5.25836 5.32363 5.45564 5.48908 5.60160 5.76077 5.86387 6.06779 6.23342 6.79672 6.95262 7.23846 7.37372 7.88046 8.91604 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.025776 B = 0.005152 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.000042 B = 5432.977819 C = 5766.966154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.119 4.119 3 C 0.285 3.715 4 H -0.009 1.009 5 C -0.544 4.544 6 H 0.066 0.934 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.970 3.030 10 H -0.262 1.262 11 H -0.284 1.284 12 H -0.277 1.277 13 N -0.713 5.713 14 C 0.532 3.468 15 O -0.567 6.567 16 C -0.214 4.214 17 C 0.001 3.999 18 C 0.039 3.961 19 C -0.269 4.269 20 S 0.236 5.764 21 C -0.033 4.033 22 N -0.456 5.456 23 H 0.042 0.958 24 H 0.044 0.956 25 H 0.020 0.980 26 H 0.068 0.932 27 H 0.038 0.962 28 H 0.264 0.736 29 H 0.397 0.603 30 H 0.166 0.834 31 H 0.190 0.810 32 H 0.215 0.785 33 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.894 11.477 -9.881 18.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.158 4.158 3 C 0.181 3.819 4 H 0.009 0.991 5 C -0.583 4.583 6 H 0.084 0.916 7 C -0.186 4.186 8 N -0.556 5.556 9 Si 0.794 3.206 10 H -0.186 1.186 11 H -0.210 1.210 12 H -0.203 1.203 13 N -0.362 5.362 14 C 0.323 3.677 15 O -0.449 6.449 16 C -0.237 4.237 17 C -0.021 4.021 18 C -0.093 4.093 19 C -0.410 4.410 20 S 0.492 5.508 21 C -0.332 4.332 22 N -0.169 5.169 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.039 0.961 26 H 0.087 0.913 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.231 0.769 30 H 0.184 0.816 31 H 0.207 0.793 32 H 0.231 0.769 33 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -11.554 11.746 -8.392 18.490 hybrid contribution 1.628 -0.897 -0.298 1.882 sum -9.926 10.850 -8.690 17.081 Atomic orbital electron populations 1.21616 0.97026 0.98693 1.00070 1.21763 0.93705 0.99453 1.00898 1.18183 0.93166 0.88791 0.81799 0.99078 1.21637 0.91771 1.38374 1.06480 0.91574 1.25775 1.03299 0.94474 0.95022 1.70070 1.36916 1.38725 1.09889 0.85338 0.79222 0.77871 0.78135 1.18618 1.20963 1.20260 1.46243 1.15620 1.57254 1.17088 1.17617 0.81947 0.79499 0.88637 1.90745 1.52174 1.60637 1.41340 1.22411 1.00517 1.02007 0.98736 1.22245 0.93415 0.91083 0.95378 1.20120 0.93225 1.01191 0.94757 1.27336 1.03320 1.05208 1.05121 1.82234 1.20619 1.42079 1.05908 1.28641 1.00744 1.00095 1.03712 1.67074 1.33455 1.15574 1.00796 0.93867 0.93732 0.96059 0.91345 0.94315 0.92726 0.76948 0.81635 0.79277 0.76859 0.78787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 8.51 71.98 0.61 -5.00 16 2 C -0.12 -6.23 5.45 30.59 0.17 -6.07 16 3 C 0.28 15.55 2.24 44.24 0.10 15.65 16 4 H -0.01 -0.57 7.58 -2.39 -0.02 -0.59 16 5 C -0.54 -30.45 8.73 25.60 0.22 -30.22 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 7 C 0.01 0.77 5.29 84.65 0.45 1.22 16 8 N -0.92 -54.61 11.29 21.45 0.24 -54.36 16 9 Si 0.97 43.78 29.54 68.60 2.03 45.80 16 10 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 12 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 13 N -0.71 -32.04 5.01 -455.01 -2.28 -34.32 16 14 C 0.53 22.67 5.21 85.10 0.44 23.11 16 15 O -0.57 -28.29 10.87 -4.56 -0.05 -28.34 16 16 C -0.21 -6.53 9.73 22.43 0.22 -6.31 16 17 C 0.00 0.01 9.84 23.79 0.23 0.25 16 18 C 0.04 1.19 5.95 40.68 0.24 1.43 16 19 C -0.27 -5.79 10.99 67.42 0.74 -5.05 16 20 S 0.24 4.78 22.96 -56.49 -1.30 3.48 16 21 C -0.03 -1.01 12.15 130.71 1.59 0.58 16 22 N -0.46 -17.27 7.35 -192.58 -1.41 -18.68 16 23 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.04 2.07 5.64 -2.39 -0.01 2.06 16 25 H 0.02 1.09 7.84 -2.38 -0.02 1.07 16 26 H 0.07 3.98 5.95 -2.39 -0.01 3.96 16 27 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 29 H 0.40 15.43 8.50 -92.70 -0.79 14.65 16 30 H 0.17 3.69 8.06 -2.91 -0.02 3.67 16 31 H 0.19 2.72 8.06 -2.91 -0.02 2.70 16 32 H 0.21 2.71 8.06 -2.91 -0.02 2.69 16 33 H 0.20 5.42 8.06 -2.91 -0.02 5.40 16 Total: -1.00 -76.65 292.50 2.59 -74.06 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.34 Total: 22.77 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 5.02 Total: -10.41 kcal Atomic # 7 Polarization: -103.91 SS G_CDS: -3.45 Total: -107.36 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.05 Total: -28.34 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 4.78 SS G_CDS: -1.30 Total: 3.48 kcal Total: -76.65 2.59 -74.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492583632.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.945 kcal (2) G-P(sol) polarization free energy of solvation -76.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds