Wall clock time and date at job start Mon Mar 30 2020 00:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47341 * 2 1 4 4 H 1.09000 * 109.47409 * 305.00223 * 3 2 1 5 5 C 1.50701 * 109.47571 * 185.00065 * 3 2 1 6 6 H 1.07997 * 120.00508 * 240.00544 * 5 3 2 7 7 C 1.37881 * 119.99446 * 60.00060 * 5 3 2 8 8 N 1.31508 * 120.00386 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99746 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47365 * 89.99604 * 9 7 5 11 11 H 1.48497 * 109.47140 * 209.99850 * 9 7 5 12 12 H 1.48502 * 109.47245 * 329.99952 * 9 7 5 13 13 N 1.46506 * 109.47285 * 65.00200 * 3 2 1 14 14 C 1.34771 * 119.99726 * 275.00259 * 13 3 2 15 15 O 1.21757 * 120.00488 * 359.97438 * 14 13 3 16 16 C 1.41719 * 119.99991 * 179.97438 * 14 13 3 17 17 C 1.35223 * 120.00003 * 188.19931 * 16 14 13 18 18 C 1.46720 * 120.00409 * 30.26333 * 17 16 14 19 19 C 1.36517 * 123.29962 * 184.84308 * 18 17 16 20 20 S 1.70933 * 108.70823 * 180.27882 * 19 18 17 21 21 C 1.70724 * 91.22179 * 359.66029 * 20 19 18 22 22 N 1.28619 * 110.80567 * 0.35059 * 21 20 19 23 23 H 1.08995 * 109.47180 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47009 * 299.99914 * 1 2 3 25 25 H 1.09000 * 109.47269 * 59.99566 * 1 2 3 26 26 H 1.09000 * 109.47009 * 240.00086 * 2 1 3 27 27 H 1.09000 * 109.47269 * 120.00434 * 2 1 3 28 28 H 0.97002 * 120.00459 * 179.97438 * 8 7 5 29 29 H 0.96998 * 119.99715 * 94.99408 * 13 3 2 30 30 H 1.07997 * 119.99688 * 8.19594 * 16 14 13 31 31 H 1.08003 * 120.00018 * 210.25603 * 17 16 14 32 32 H 1.07996 * 125.64155 * 0.02562 * 19 18 17 33 33 H 1.07998 * 124.59933 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1432 0.8784 -1.2281 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8800 -1.3813 10 1 6.5538 -0.3519 -0.7600 11 1 6.3834 0.9214 -2.8167 12 1 6.5575 2.0719 -0.6891 13 7 1.6525 2.0975 1.2519 14 6 0.4353 2.6644 1.3670 15 8 -0.3423 2.6326 0.4306 16 6 0.0602 3.2975 2.5781 17 6 -1.2125 3.7191 2.7547 18 6 -2.3177 3.0101 2.1003 19 6 -3.6149 3.4321 2.1536 20 16 -4.5857 2.3324 1.2759 21 6 -3.2209 1.3856 0.8817 22 7 -2.1532 1.8876 1.3939 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.8291 -0.0612 -2.9499 29 1 2.2720 2.1230 1.9978 30 1 0.7908 3.4433 3.3600 31 1 -1.4154 4.5777 3.3777 32 1 -3.9696 4.3125 2.6687 33 1 -3.2507 0.4842 0.2877 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492583633.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:57 Heat of formation + Delta-G solvation = 51.744297 kcal Electronic energy + Delta-G solvation = -18132.779779 eV Core-core repulsion = 15287.125244 eV Total energy + Delta-G solvation = -2845.654535 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.81340 -38.43447 -35.01020 -32.98043 -32.20350 -30.69832 -29.67946 -26.93016 -25.03094 -23.63163 -22.46554 -20.34215 -19.26283 -18.93870 -17.76295 -16.71286 -16.09476 -15.23964 -15.01548 -14.27117 -14.15893 -14.06061 -13.38158 -13.20705 -13.08441 -12.55275 -12.38156 -11.68610 -11.41124 -11.35211 -11.12871 -10.89906 -10.72186 -10.21709 -10.08233 -9.75801 -9.49700 -9.42826 -9.13027 -8.89832 -8.66744 -8.38602 -7.83126 -7.51145 -6.03629 -4.12413 0.57842 1.55519 1.60366 1.95934 3.28567 3.35257 3.37618 3.44720 4.29972 4.34851 4.45610 4.65206 5.10396 5.26998 5.27621 5.38006 5.60456 5.77790 6.21622 6.43916 6.51882 6.58061 6.72854 6.91768 7.30608 7.41530 7.60018 7.69956 7.75318 7.92238 8.02533 8.05616 8.32477 8.86252 8.93936 9.39956 9.57514 11.01446 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.039536 B = 0.004916 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.038421 B = 5693.820598 C = 6196.252714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.125 4.125 3 C 0.273 3.727 4 H 0.046 0.954 5 C -0.532 4.532 6 H 0.059 0.941 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.709 5.709 14 C 0.525 3.475 15 O -0.518 6.518 16 C -0.173 4.173 17 C -0.032 4.032 18 C 0.089 3.911 19 C -0.285 4.285 20 S 0.136 5.864 21 C 0.006 3.994 22 N -0.380 5.380 23 H 0.011 0.989 24 H 0.068 0.932 25 H 0.042 0.958 26 H 0.093 0.907 27 H 0.026 0.974 28 H 0.263 0.737 29 H 0.384 0.616 30 H 0.129 0.871 31 H 0.138 0.862 32 H 0.173 0.827 33 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.016 4.320 10.030 16.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.164 4.164 3 C 0.171 3.829 4 H 0.064 0.936 5 C -0.571 4.571 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.357 5.357 14 C 0.313 3.687 15 O -0.397 6.397 16 C -0.196 4.196 17 C -0.055 4.055 18 C -0.044 4.044 19 C -0.425 4.425 20 S 0.391 5.609 21 C -0.295 4.295 22 N -0.091 5.091 23 H 0.031 0.969 24 H 0.087 0.913 25 H 0.061 0.939 26 H 0.111 0.889 27 H 0.045 0.955 28 H 0.073 0.927 29 H 0.216 0.784 30 H 0.147 0.853 31 H 0.156 0.844 32 H 0.191 0.809 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -14.076 3.799 8.792 17.026 hybrid contribution 2.175 0.460 0.571 2.296 sum -11.901 4.259 9.364 15.731 Atomic orbital electron populations 1.21955 0.97859 0.97449 1.02709 1.21886 0.93165 0.99654 1.01649 1.18668 0.93714 0.89192 0.81325 0.93629 1.21293 0.91091 1.38617 1.06061 0.92276 1.24880 0.98383 0.94970 0.95476 1.69908 1.34955 1.37841 1.09361 0.86499 0.85230 0.78371 0.77283 1.20620 1.21158 1.19928 1.46444 1.15245 1.55796 1.18232 1.16942 0.82971 0.80148 0.88687 1.90794 1.50199 1.57939 1.40735 1.22495 0.97288 1.02210 0.97632 1.21575 0.90567 0.95891 0.97419 1.19723 0.92015 0.93456 0.99175 1.26715 0.97621 1.07220 1.10965 1.82614 1.15194 1.18378 1.44690 1.28529 0.90108 1.04930 1.05978 1.67273 1.26981 1.08801 1.06077 0.96949 0.91338 0.93864 0.88884 0.95510 0.92735 0.78384 0.85301 0.84391 0.80925 0.79015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.51 37.16 0.32 -2.98 16 2 C -0.12 -3.16 5.45 -26.73 -0.15 -3.31 16 3 C 0.27 7.11 2.24 -69.08 -0.15 6.96 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -14.47 8.73 -34.44 -0.30 -14.77 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -25.41 11.29 55.43 0.63 -24.78 16 9 Si 0.90 21.07 29.54 -169.99 -5.02 16.04 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 N -0.71 -15.34 5.01 -57.80 -0.29 -15.63 16 14 C 0.53 10.81 5.57 -14.93 -0.08 10.72 16 15 O -0.52 -12.21 10.31 5.14 0.05 -12.16 16 16 C -0.17 -2.69 9.74 -39.33 -0.38 -3.07 16 17 C -0.03 -0.44 9.89 -37.23 -0.37 -0.81 16 18 C 0.09 1.37 6.01 -84.28 -0.51 0.86 16 19 C -0.28 -3.48 10.99 30.11 0.33 -3.15 16 20 S 0.14 1.52 22.96 -107.50 -2.47 -0.95 16 21 C 0.01 0.08 12.16 51.42 0.62 0.71 16 22 N -0.38 -6.71 5.39 -12.22 -0.07 -6.77 16 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 24 H 0.07 1.54 4.15 -51.93 -0.22 1.33 16 25 H 0.04 1.07 7.84 -51.93 -0.41 0.66 16 26 H 0.09 2.61 5.95 -51.93 -0.31 2.30 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.38 7.30 8.50 -40.82 -0.35 6.95 16 30 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 31 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 32 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.19 2.44 8.06 -52.49 -0.42 2.01 16 LS Contribution 288.97 15.07 4.35 4.35 Total: -1.00 -32.57 288.97 -7.32 -39.89 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -3.75 Total: 7.13 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -0.76 Total: -7.13 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: 0.27 Total: -47.18 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.05 Total: -12.16 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -2.47 Total: -0.95 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.57 -7.32 -39.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492583633.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.636 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds