Wall clock time and date at job start Mon Mar 30 2020 00:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30959 * 123.07601 * 2 1 4 4 C 1.29355 * 117.48850 * 180.30760 * 3 2 1 5 5 S 1.70907 * 110.65333 * 359.73213 * 4 3 2 6 6 C 1.37064 * 123.07349 * 179.81171 * 2 1 3 7 7 C 1.41725 * 126.19663 * 359.97438 * 6 2 1 8 8 C 1.35564 * 120.00326 * 179.71237 * 7 6 2 9 9 C 1.41546 * 119.99991 * 180.02562 * 8 7 6 10 10 O 1.21783 * 119.99923 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99945 * 179.72949 * 9 8 7 12 12 C 1.46495 * 119.99663 * 180.27840 * 11 9 8 13 13 C 1.53004 * 109.46738 * 179.97438 * 12 11 9 14 14 C 1.50708 * 109.47029 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99800 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99760 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00347 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99775 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47191 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46768 * 120.00164 * 18 16 14 21 21 H 1.48498 * 109.47283 * 240.00415 * 18 16 14 22 22 H 1.09002 * 109.47595 * 270.18975 * 1 2 3 23 23 H 1.09006 * 109.47481 * 30.18880 * 1 2 3 24 24 H 1.09000 * 109.47253 * 150.19043 * 1 2 3 25 25 H 1.08003 * 124.66733 * 179.72917 * 4 3 2 26 26 H 1.08001 * 119.99415 * 359.71962 * 7 6 2 27 27 H 1.07992 * 119.99721 * 0.02562 * 8 7 6 28 28 H 0.97000 * 119.99736 * 0.27110 * 11 9 8 29 29 H 1.08999 * 109.47534 * 299.99482 * 12 11 9 30 30 H 1.08997 * 109.47774 * 59.99894 * 12 11 9 31 31 H 1.09006 * 109.47053 * 299.99454 * 13 12 11 32 32 H 1.08997 * 109.47419 * 59.99839 * 13 12 11 33 33 H 0.96996 * 120.00389 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2217 1.0974 0.0000 4 6 3.5091 0.9714 -0.0062 5 16 3.9533 -0.6789 -0.0055 6 6 2.2550 -1.1485 0.0038 7 6 1.7533 -2.4740 0.0086 8 6 2.6113 -3.5236 0.0061 9 6 2.1102 -4.8474 0.0104 10 8 0.9083 -5.0435 0.0159 11 7 2.9632 -5.8908 0.0024 12 6 2.4445 -7.2609 0.0007 13 6 3.6130 -8.2485 -0.0094 14 6 3.0794 -9.6580 -0.0105 15 1 2.0135 -9.8318 -0.0050 16 6 3.9521 -10.7254 -0.0197 17 7 5.2500 -10.5137 -0.0269 18 14 3.2907 -12.4724 -0.0203 19 1 1.8061 -12.4397 -0.0107 20 1 3.7619 -13.1796 -1.2382 21 1 3.7783 -13.1868 1.1868 22 1 -0.3634 0.0034 1.0276 23 1 -0.3634 0.8883 -0.5168 24 1 -0.3634 -0.8917 -0.5109 25 1 4.2070 1.7957 -0.0111 26 1 0.6874 -2.6479 0.0142 27 1 3.6771 -3.3496 0.0008 28 1 3.9205 -5.7346 -0.0023 29 1 1.8402 -7.4217 0.8935 30 1 1.8305 -7.4159 -0.8864 31 1 4.2170 -8.0876 -0.9025 32 1 4.2274 -8.0937 0.8775 33 1 5.8640 -11.2646 -0.0330 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492644062.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:17:08 Heat of formation + Delta-G solvation = 7.884818 kcal Electronic energy + Delta-G solvation = -16414.059095 eV Core-core repulsion = 13566.502671 eV Total energy + Delta-G solvation = -2847.556424 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.20068 -39.41560 -35.19079 -34.45774 -32.86180 -31.55110 -29.81842 -27.84533 -25.51431 -24.80857 -22.74266 -20.91351 -19.86823 -19.45870 -17.97455 -17.27252 -16.37871 -15.56175 -15.29391 -15.22813 -14.86262 -14.46669 -13.91958 -13.69843 -13.36272 -13.11432 -12.91529 -12.86496 -12.29870 -12.19571 -11.44437 -11.20775 -11.15791 -11.02246 -10.63487 -10.34674 -10.11333 -9.83759 -9.51153 -9.39121 -9.22367 -8.63748 -8.45285 -8.24447 -6.10403 -4.13151 -0.27013 0.97869 1.36736 1.56827 2.54981 3.27818 3.35375 3.40378 3.63533 3.75943 3.88084 4.41349 4.64323 4.71287 4.85323 4.95792 5.26808 5.31027 5.33069 5.42487 5.52153 5.89371 6.00104 6.08510 6.34207 6.38638 6.73028 6.89821 7.34051 7.50942 7.60565 7.87937 7.99231 8.26654 8.61611 8.93128 9.51832 11.01282 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.047235 B = 0.002924 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.632365 B = 9574.609251 C =10141.452196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.093 3.907 3 N -0.471 5.471 4 C 0.012 3.988 5 S 0.160 5.840 6 C -0.215 4.215 7 C 0.005 3.995 8 C -0.197 4.197 9 C 0.538 3.462 10 O -0.557 6.557 11 N -0.715 5.715 12 C 0.120 3.880 13 C 0.012 3.988 14 C -0.521 4.521 15 H 0.060 0.940 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.897 3.103 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.201 0.799 26 H 0.151 0.849 27 H 0.122 0.878 28 H 0.398 0.602 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.915 22.765 0.032 22.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.044 4.044 3 N -0.184 5.184 4 C -0.282 4.282 5 S 0.417 5.583 6 C -0.336 4.336 7 C -0.018 4.018 8 C -0.221 4.221 9 C 0.327 3.673 10 O -0.438 6.438 11 N -0.364 5.364 12 C -0.002 4.002 13 C -0.026 4.026 14 C -0.560 4.560 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.724 3.276 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.209 1.209 22 H 0.100 0.900 23 H 0.098 0.902 24 H 0.100 0.900 25 H 0.218 0.782 26 H 0.169 0.831 27 H 0.140 0.860 28 H 0.232 0.768 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.757 22.577 0.032 22.646 hybrid contribution -0.337 -0.832 0.011 0.898 sum -2.095 21.746 0.043 21.846 Atomic orbital electron populations 1.20458 0.86443 1.03917 1.03507 1.21130 0.98264 0.85518 0.99451 1.65917 1.04998 1.31802 1.15660 1.28507 0.95172 1.00624 1.03877 1.84067 1.06141 1.02721 1.65374 1.23735 0.95671 0.98593 1.15587 1.20547 1.01066 0.87733 0.92422 1.22228 1.00013 0.93607 1.06228 1.16937 0.86803 0.85522 0.78047 1.90810 1.15064 1.86784 1.51176 1.46296 1.09760 1.07510 1.72830 1.21740 0.99026 0.78526 1.00894 1.19338 0.92437 0.92951 0.97862 1.21096 0.93284 0.90391 1.51191 0.92171 1.25001 0.94821 0.99515 0.94994 1.69961 1.01513 1.31364 1.50486 0.86457 0.79264 0.84236 0.77619 1.19568 1.20931 1.20925 0.90006 0.90202 0.90000 0.78225 0.83142 0.85985 0.76788 0.92418 0.92421 0.95919 0.95920 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.04 36.00 0.36 -0.32 16 2 C 0.09 0.97 6.85 -83.39 -0.57 0.40 16 3 N -0.47 -4.96 10.49 -11.23 -0.12 -5.07 16 4 C 0.01 0.10 12.20 51.72 0.63 0.73 16 5 S 0.16 1.35 21.97 -107.50 -2.36 -1.02 16 6 C -0.21 -2.28 6.26 -38.68 -0.24 -2.53 16 7 C 0.00 0.05 8.96 -39.21 -0.35 -0.30 16 8 C -0.20 -2.56 9.32 -39.28 -0.37 -2.93 16 9 C 0.54 9.20 7.56 -15.00 -0.11 9.08 16 10 O -0.56 -11.40 16.11 5.11 0.08 -11.31 16 11 N -0.72 -12.56 5.54 -63.25 -0.35 -12.91 16 12 C 0.12 2.57 5.61 -4.04 -0.02 2.55 16 13 C 0.01 0.29 5.09 -27.88 -0.14 0.14 16 14 C -0.52 -14.44 9.11 -34.44 -0.31 -14.76 16 15 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 18 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.08 0.61 7.10 -51.93 -0.37 0.24 16 25 H 0.20 0.89 8.06 -52.48 -0.42 0.47 16 26 H 0.15 1.80 6.53 -52.49 -0.34 1.46 16 27 H 0.12 1.31 7.10 -52.49 -0.37 0.93 16 28 H 0.40 6.00 8.43 -40.82 -0.34 5.66 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 306.83 15.07 4.62 4.62 Total: -1.00 -32.83 306.83 -7.56 -40.39 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -3.93 Total: 0.70 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -1.23 Total: -6.38 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 0.27 Total: -43.33 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.08 Total: -11.31 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.36 Total: -1.02 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.83 -7.56 -40.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492644062.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.274 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds