Wall clock time and date at job start Mon Mar 30 2020 00:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30960 * 123.07411 * 2 1 4 4 C 1.29362 * 117.48847 * 180.30952 * 3 2 1 5 5 S 1.70910 * 110.65122 * 359.70525 * 4 3 2 6 6 C 1.37067 * 123.07789 * 179.76215 * 2 1 3 7 7 C 1.41721 * 126.18768 * 0.02562 * 6 2 1 8 8 C 1.35572 * 119.99867 * 227.42178 * 7 6 2 9 9 C 1.41550 * 119.99749 * 7.34619 * 8 7 6 10 10 O 1.21777 * 119.99728 * 5.78030 * 9 8 7 11 11 N 1.34770 * 119.99793 * 185.77962 * 9 8 7 12 12 C 1.46503 * 120.00270 * 0.02562 * 11 9 8 13 13 C 1.46505 * 119.99897 * 179.97438 * 11 9 8 14 14 C 1.50707 * 109.46608 * 90.00344 * 13 11 9 15 15 H 1.07995 * 120.00273 * 359.97438 * 14 13 11 16 16 C 1.37876 * 119.99672 * 179.97438 * 14 13 11 17 17 N 1.31509 * 120.00168 * 179.97438 * 16 14 13 18 18 Si 1.86807 * 120.00101 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47185 * 89.99805 * 18 16 14 20 20 H 1.48495 * 109.47087 * 210.00042 * 18 16 14 21 21 H 1.48505 * 109.46911 * 330.00157 * 18 16 14 22 22 H 1.08994 * 109.47407 * 270.23497 * 1 2 3 23 23 H 1.09002 * 109.47048 * 30.23347 * 1 2 3 24 24 H 1.08995 * 109.46723 * 150.23043 * 1 2 3 25 25 H 1.08004 * 124.66893 * 179.68654 * 4 3 2 26 26 H 1.08000 * 120.00718 * 47.42105 * 7 6 2 27 27 H 1.07993 * 120.00136 * 187.61938 * 8 7 6 28 28 H 1.08999 * 109.47152 * 89.99634 * 12 11 9 29 29 H 1.08998 * 109.46845 * 209.99715 * 12 11 9 30 30 H 1.09001 * 109.46893 * 330.00023 * 12 11 9 31 31 H 1.08999 * 109.47429 * 209.99987 * 13 11 9 32 32 H 1.08998 * 109.46950 * 330.00457 * 13 11 9 33 33 H 0.97000 * 120.00345 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2217 1.0974 0.0000 4 6 3.5092 0.9715 -0.0062 5 16 3.9534 -0.6789 -0.0048 6 6 2.2551 -1.1485 0.0048 7 6 1.7533 -2.4739 0.0098 8 6 2.2560 -3.3857 0.8781 9 6 3.1677 -2.9795 1.8818 10 8 3.4197 -1.7978 2.0333 11 7 3.7567 -3.9006 2.6698 12 6 3.4538 -5.3223 2.4872 13 6 4.7007 -3.4803 3.7083 14 6 3.9542 -3.2264 4.9927 15 1 2.8837 -3.3640 5.0313 16 6 4.6379 -2.8185 6.1183 17 7 3.9865 -2.5965 7.2390 18 14 6.4894 -2.5799 6.0513 19 1 6.7943 -1.1797 5.6619 20 1 7.0734 -2.8604 7.3875 21 1 7.0725 -3.5099 5.0511 22 1 -0.3634 0.0042 1.0276 23 1 -0.3633 0.8879 -0.5175 24 1 -0.3632 -0.8920 -0.5102 25 1 4.2070 1.7958 -0.0118 26 1 0.9706 -2.7577 -0.6781 27 1 1.9643 -4.4226 0.8012 28 1 4.1531 -5.7537 1.7709 29 1 3.5470 -5.8392 3.4423 30 1 2.4362 -5.4318 2.1125 31 1 5.4398 -4.2655 3.8669 32 1 5.2036 -2.5659 3.3936 33 1 4.4675 -2.3092 8.0308 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492715810.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:17:10 Heat of formation + Delta-G solvation = 23.508086 kcal Electronic energy + Delta-G solvation = -17889.043411 eV Core-core repulsion = 15042.164463 eV Total energy + Delta-G solvation = -2846.878949 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.11983 -40.35011 -36.82661 -35.16137 -34.68391 -32.17774 -30.61432 -28.43134 -27.28400 -25.93105 -24.98845 -22.73265 -20.52966 -19.63184 -19.14632 -18.44060 -18.17257 -17.08548 -16.58299 -15.96995 -15.86426 -15.67631 -14.79409 -14.52462 -14.38984 -14.19161 -13.86624 -13.64637 -13.56710 -13.33950 -13.19591 -13.14099 -12.74820 -12.44169 -12.32919 -12.03855 -11.76377 -11.28944 -10.84911 -10.59914 -10.41986 -9.68139 -9.12995 -8.92829 -8.35453 -6.40256 -0.71637 0.53495 0.84997 1.07170 1.30573 1.34508 1.43190 1.91022 2.29167 2.41570 2.63445 2.99284 3.45704 3.95703 4.03609 4.24683 4.29276 4.42697 4.62399 4.67822 4.76639 4.79524 4.84756 4.93376 4.96279 5.00374 5.18459 5.31176 5.45415 5.48928 5.66946 6.23975 6.61295 6.75610 6.88996 7.20788 7.46460 8.81792 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.021991 B = 0.006263 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.968762 B = 4469.706050 C = 4887.916726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.062 3.938 3 N -0.509 5.509 4 C -0.028 4.028 5 S 0.237 5.763 6 C -0.235 4.235 7 C 0.021 3.979 8 C -0.216 4.216 9 C 0.511 3.489 10 O -0.576 6.576 11 N -0.603 5.603 12 C 0.075 3.925 13 C 0.226 3.774 14 C -0.533 4.533 15 H 0.025 0.975 16 C 0.009 3.991 17 N -0.948 5.948 18 Si 0.948 3.052 19 H -0.277 1.277 20 H -0.275 1.275 21 H -0.236 1.236 22 H 0.065 0.935 23 H 0.080 0.920 24 H 0.103 0.897 25 H 0.215 0.785 26 H 0.189 0.811 27 H 0.174 0.826 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.047 0.953 32 H 0.021 0.979 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.987 -3.137 -19.653 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.075 4.075 3 N -0.224 5.224 4 C -0.320 4.320 5 S 0.497 5.503 6 C -0.357 4.357 7 C -0.001 4.001 8 C -0.240 4.240 9 C 0.304 3.696 10 O -0.460 6.460 11 N -0.333 5.333 12 C -0.067 4.067 13 C 0.103 3.897 14 C -0.572 4.572 15 H 0.043 0.957 16 C -0.189 4.189 17 N -0.588 5.588 18 Si 0.771 3.229 19 H -0.203 1.203 20 H -0.201 1.201 21 H -0.159 1.159 22 H 0.084 0.916 23 H 0.099 0.901 24 H 0.121 0.879 25 H 0.231 0.769 26 H 0.206 0.794 27 H 0.192 0.808 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.943 -2.440 -19.391 19.567 hybrid contribution -0.191 0.506 1.164 1.283 sum -1.134 -1.933 -18.227 18.365 Atomic orbital electron populations 1.20409 0.85316 1.04672 1.02801 1.21375 0.99099 0.85551 1.01522 1.65836 1.05826 1.32759 1.18015 1.28794 0.95497 1.02181 1.05566 1.83494 1.06742 1.01246 1.58850 1.23859 0.96762 0.99546 1.15541 1.20988 0.95549 0.87724 0.95816 1.22528 1.01621 1.02940 0.96918 1.18016 0.82027 0.85691 0.83851 1.90885 1.65029 1.18178 1.71929 1.47968 1.43815 1.08294 1.33216 1.22014 1.02663 0.79388 1.02642 1.19281 0.89220 0.95771 0.85428 1.21569 0.94451 1.45884 0.95249 0.95704 1.25881 1.04236 0.94173 0.94611 1.70057 1.38486 1.48015 1.02253 0.85706 0.78978 0.79542 0.78667 1.20263 1.20063 1.15876 0.91621 0.90140 0.87882 0.76879 0.79392 0.80834 0.90268 0.91900 0.88866 0.93463 0.96102 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.69 10.09 71.24 0.72 -0.97 16 2 C 0.06 1.95 6.85 42.41 0.29 2.24 16 3 N -0.51 -17.39 10.49 -189.44 -1.99 -19.38 16 4 C -0.03 -0.88 12.20 130.61 1.59 0.71 16 5 S 0.24 7.47 19.55 -56.49 -1.10 6.36 16 6 C -0.23 -7.18 4.63 22.86 0.11 -7.08 16 7 C 0.02 0.49 9.19 22.51 0.21 0.70 16 8 C -0.22 -5.80 9.14 22.47 0.21 -5.59 16 9 C 0.51 20.02 7.10 85.06 0.60 20.62 16 10 O -0.58 -27.03 10.98 -4.59 -0.05 -27.08 16 11 N -0.60 -24.05 2.86 -861.86 -2.46 -26.52 16 12 C 0.07 2.06 10.16 127.77 1.30 3.36 16 13 C 0.23 10.95 4.23 85.63 0.36 11.31 16 14 C -0.53 -31.70 9.94 25.60 0.25 -31.45 16 15 H 0.02 1.66 8.06 -2.91 -0.02 1.64 16 16 C 0.01 0.51 5.47 84.66 0.46 0.98 16 17 N -0.95 -60.89 13.96 21.45 0.30 -60.59 16 18 Si 0.95 44.81 27.47 68.60 1.88 46.69 16 19 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.24 -9.90 6.54 99.48 0.65 -9.25 16 22 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.10 1.65 7.47 -2.39 -0.02 1.63 16 25 H 0.21 5.08 8.06 -2.91 -0.02 5.06 16 26 H 0.19 2.48 7.83 -2.91 -0.02 2.46 16 27 H 0.17 3.12 6.03 -2.91 -0.02 3.10 16 28 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.06 1.89 8.07 -2.39 -0.02 1.87 16 30 H 0.09 1.97 6.02 -2.39 -0.01 1.96 16 31 H 0.05 2.11 7.13 -2.39 -0.02 2.09 16 32 H 0.02 1.08 6.85 -2.39 -0.02 1.06 16 33 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 Total: -1.00 -81.89 293.31 3.75 -78.15 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: 1.06 Total: 7.52 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 6.10 Total: -5.16 kcal Atomic # 7 Polarization: -102.34 SS G_CDS: -4.15 Total: -106.49 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.05 Total: -27.08 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.69 kcal Atomic # 16 Polarization: 7.47 SS G_CDS: -1.10 Total: 6.36 kcal Total: -81.89 3.75 -78.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492715810.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.656 kcal (2) G-P(sol) polarization free energy of solvation -81.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds