Wall clock time and date at job start Mon Mar 30 2020 01:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47458 * 2 1 4 4 C 1.36778 * 120.00060 * 95.82051 * 3 2 1 5 5 H 1.07995 * 119.99757 * 219.37673 * 4 3 2 6 6 C 1.39056 * 119.99703 * 39.37621 * 4 3 2 7 7 N 1.31362 * 119.99981 * 18.69540 * 6 4 3 8 8 Si 1.86803 * 119.99705 * 198.68866 * 6 4 3 9 9 H 1.48499 * 109.47107 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46776 * 120.00317 * 8 6 4 11 11 H 1.48497 * 109.47245 * 240.00178 * 8 6 4 12 12 C 1.34772 * 120.00235 * 275.82735 * 3 2 1 13 13 O 1.21834 * 120.00620 * 179.97438 * 12 3 2 14 14 C 1.41346 * 119.99704 * 359.97438 * 12 3 2 15 15 C 1.35714 * 120.00252 * 180.02562 * 14 12 3 16 16 C 1.41651 * 120.00219 * 180.02562 * 15 14 12 17 17 S 1.76214 * 126.19514 * 0.02562 * 16 15 14 18 18 C 1.70911 * 90.39316 * 180.02562 * 17 16 15 19 19 N 1.29360 * 110.66510 * 359.97438 * 18 17 16 20 20 C 1.30949 * 117.49814 * 359.71119 * 19 18 17 21 21 C 1.50704 * 123.08333 * 180.32578 * 20 19 18 22 22 H 1.08998 * 109.47157 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47201 * 299.99894 * 1 2 3 24 24 H 1.09000 * 109.46484 * 60.00058 * 1 2 3 25 25 H 1.08999 * 109.47645 * 239.99496 * 2 1 3 26 26 H 1.09005 * 109.47151 * 119.99740 * 2 1 3 27 27 H 0.97003 * 119.99432 * 180.02562 * 7 6 4 28 28 H 1.08003 * 120.00573 * 0.02562 * 14 12 3 29 29 H 1.07998 * 119.99875 * 359.97438 * 15 14 12 30 30 H 1.08007 * 124.66610 * 180.02562 * 18 17 16 31 31 H 1.09001 * 109.47140 * 270.21318 * 21 20 19 32 32 H 1.08999 * 109.47228 * 30.21383 * 21 20 19 33 33 H 1.09000 * 109.46730 * 150.21578 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3597 1.9859 1.1784 5 1 2.1120 3.0239 1.3441 6 6 3.0254 1.2641 2.1630 7 7 3.6474 0.1494 1.8528 8 14 3.0354 1.8797 3.9266 9 1 2.2679 3.1480 4.0125 10 1 2.4102 0.8624 4.8095 11 1 4.4357 2.1176 4.3599 12 6 2.1314 2.0560 -1.1611 13 8 2.5371 3.2048 -1.1611 14 6 1.7791 1.4310 -2.3789 15 6 1.8933 2.1103 -3.5482 16 6 1.5397 1.4840 -4.7686 17 16 0.9363 -0.1607 -4.9576 18 6 0.8327 0.0592 -6.6494 19 7 1.2185 1.2489 -6.9796 20 6 1.5992 2.0502 -6.0164 21 6 2.0651 3.4630 -6.2574 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 4.1115 -0.3543 2.5397 28 1 1.4190 0.4127 -2.3790 29 1 2.2529 3.1286 -3.5482 30 1 0.4912 -0.6917 -7.3467 31 1 3.1427 3.4672 -6.4216 32 1 1.5621 3.8665 -7.1362 33 1 1.8276 4.0770 -5.3887 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492738020.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:59 Heat of formation + Delta-G solvation = 28.126348 kcal Electronic energy + Delta-G solvation = -17519.411416 eV Core-core repulsion = 14672.732731 eV Total energy + Delta-G solvation = -2846.678686 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.72549 -38.80532 -35.27312 -33.95991 -32.21395 -30.93528 -29.54647 -27.65465 -25.38057 -24.71120 -22.69160 -21.77949 -19.02916 -18.85830 -17.18887 -17.00544 -16.49740 -15.32842 -14.90041 -14.81540 -14.31824 -13.75017 -13.51674 -13.05009 -13.02605 -12.95321 -12.52803 -12.45328 -11.96877 -11.78724 -11.62843 -11.18072 -11.07693 -10.88246 -10.67437 -10.43099 -10.38651 -10.16622 -9.65972 -9.06673 -8.96458 -8.49545 -7.86438 -7.51804 -6.47749 -4.05043 0.22355 1.41140 1.80608 2.12917 3.00717 3.13327 3.19914 3.26287 4.05317 4.26818 4.41571 4.80242 4.98478 5.11378 5.14327 5.41700 5.51884 5.67181 5.74361 5.84671 5.87602 6.06501 6.13983 6.24475 6.34357 6.45090 6.67969 6.76744 6.81688 7.13549 7.44498 7.76592 8.17275 8.41670 9.09241 9.26420 9.93910 10.55268 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.034812 B = 0.004744 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.122281 B = 5900.625506 C = 6420.562468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.096 3.904 3 N -0.421 5.421 4 C -0.298 4.298 5 H 0.095 0.905 6 C 0.037 3.963 7 N -0.860 5.860 8 Si 0.922 3.078 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.279 1.279 12 C 0.471 3.529 13 O -0.590 6.590 14 C -0.148 4.148 15 C -0.057 4.057 16 C -0.174 4.174 17 S 0.137 5.863 18 C -0.009 4.009 19 N -0.465 5.465 20 C 0.060 3.940 21 C -0.077 4.077 22 H 0.053 0.947 23 H 0.058 0.942 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.108 0.892 27 H 0.271 0.729 28 H 0.115 0.885 29 H 0.146 0.854 30 H 0.196 0.804 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.951 -3.773 -10.609 12.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.028 4.028 3 N -0.138 5.138 4 C -0.427 4.427 5 H 0.113 0.887 6 C -0.169 4.169 7 N -0.496 5.496 8 Si 0.748 3.252 9 H -0.189 1.189 10 H -0.204 1.204 11 H -0.205 1.205 12 C 0.264 3.736 13 O -0.477 6.477 14 C -0.172 4.172 15 C -0.081 4.081 16 C -0.295 4.295 17 S 0.393 5.607 18 C -0.303 4.303 19 N -0.178 5.178 20 C -0.075 4.075 21 C -0.136 4.136 22 H 0.072 0.928 23 H 0.077 0.923 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.126 0.874 27 H 0.081 0.919 28 H 0.133 0.867 29 H 0.164 0.836 30 H 0.212 0.788 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.910 -4.166 -10.414 12.678 hybrid contribution 0.301 0.591 0.637 0.920 sum -5.609 -3.575 -9.777 11.825 Atomic orbital electron populations 1.22248 0.97765 1.00617 1.01783 1.21605 0.91940 0.85455 1.03840 1.43568 1.53168 1.11611 1.05403 1.19579 1.34510 0.97959 0.90637 0.88744 1.25521 0.94049 0.96369 1.00969 1.69905 1.29232 1.16259 1.34222 0.85938 0.78352 0.79219 0.81703 1.18935 1.20415 1.20512 1.16882 0.84554 0.88246 0.83953 1.90671 1.51734 1.18354 1.86986 1.22585 1.00285 0.99910 0.94444 1.20367 0.99193 1.00252 0.88303 1.23794 1.10114 0.96983 0.98564 1.83982 1.58715 1.12127 1.05852 1.28246 1.06008 0.97930 0.98132 1.65818 1.12916 1.02912 1.36150 1.20972 1.02107 0.98202 0.86261 1.20349 1.01433 0.88727 1.03110 0.92836 0.92278 0.93687 0.93089 0.87403 0.91881 0.86730 0.83645 0.78771 0.90552 0.90758 0.90215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 10.05 37.16 0.37 -2.55 16 2 C 0.10 2.04 5.26 -4.04 -0.02 2.02 16 3 N -0.42 -10.63 2.51 -118.14 -0.30 -10.92 16 4 C -0.30 -8.12 8.87 -15.04 -0.13 -8.25 16 5 H 0.09 2.68 7.78 -52.49 -0.41 2.27 16 6 C 0.04 0.95 4.95 -17.45 -0.09 0.86 16 7 N -0.86 -22.57 11.51 55.50 0.64 -21.93 16 8 Si 0.92 19.95 29.59 -169.99 -5.03 14.92 16 9 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 10 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 12 C 0.47 11.76 7.35 -15.08 -0.11 11.65 16 13 O -0.59 -16.70 16.00 5.07 0.08 -16.61 16 14 C -0.15 -2.96 8.07 -39.30 -0.32 -3.27 16 15 C -0.06 -1.03 8.96 -39.18 -0.35 -1.38 16 16 C -0.17 -2.71 6.26 -38.68 -0.24 -2.95 16 17 S 0.14 1.76 21.97 -107.50 -2.36 -0.60 16 18 C -0.01 -0.10 12.20 51.72 0.63 0.53 16 19 N -0.46 -6.67 10.49 -11.21 -0.12 -6.78 16 20 C 0.06 0.89 6.85 -83.36 -0.57 0.32 16 21 C -0.08 -0.94 10.04 36.01 0.36 -0.58 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 24 H 0.04 0.76 7.47 -51.93 -0.39 0.37 16 25 H 0.05 1.00 6.43 -51.93 -0.33 0.67 16 26 H 0.11 2.51 5.64 -51.93 -0.29 2.21 16 27 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 28 H 0.11 2.05 4.99 -52.48 -0.26 1.79 16 29 H 0.15 2.69 6.53 -52.49 -0.34 2.34 16 30 H 0.20 1.55 8.06 -52.48 -0.42 1.13 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.94 7.11 -51.93 -0.37 0.58 16 LS Contribution 297.14 15.07 4.48 4.48 Total: -1.00 -31.27 297.14 -6.72 -37.99 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -3.65 Total: 3.09 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -0.47 Total: -3.62 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.22 Total: -39.64 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: 0.08 Total: -16.61 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.92 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.36 Total: -0.60 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.27 -6.72 -37.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492738020.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.118 kcal (2) G-P(sol) polarization free energy of solvation -31.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds