Wall clock time and date at job start Mon Mar 30 2020 01:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.46828 * 2 1 4 4 C 1.46498 * 120.00160 * 90.00544 * 3 2 1 5 5 C 1.50705 * 109.47001 * 269.99696 * 4 3 2 6 6 H 1.07999 * 119.99896 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00168 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00123 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99798 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47378 * 90.00148 * 9 7 5 11 11 H 1.48508 * 109.47004 * 209.99828 * 9 7 5 12 12 H 1.48501 * 109.47659 * 329.99581 * 9 7 5 13 13 C 1.34781 * 120.00159 * 269.99905 * 3 2 1 14 14 O 1.21776 * 120.00297 * 180.02562 * 13 3 2 15 15 C 1.41549 * 119.99681 * 0.02562 * 13 3 2 16 16 C 1.35558 * 120.00050 * 186.75246 * 15 13 3 17 17 C 1.41731 * 119.99985 * 10.06067 * 16 15 13 18 18 C 1.37068 * 126.19587 * 224.72266 * 17 16 15 19 19 N 1.30947 * 113.85111 * 179.97438 * 18 17 16 20 20 C 1.29363 * 117.49528 * 359.97438 * 19 18 17 21 21 S 1.70918 * 110.64758 * 359.75434 * 20 19 18 22 22 H 1.09004 * 109.47356 * 180.02562 * 1 2 3 23 23 H 1.09010 * 109.47034 * 300.00208 * 1 2 3 24 24 H 1.09001 * 109.47293 * 59.99900 * 1 2 3 25 25 H 1.08997 * 109.46820 * 240.00062 * 2 1 3 26 26 H 1.08995 * 109.47333 * 119.99632 * 2 1 3 27 27 H 1.08999 * 109.47288 * 29.99138 * 4 3 2 28 28 H 1.08999 * 109.47609 * 150.00231 * 4 3 2 29 29 H 0.96998 * 120.00190 * 180.02562 * 8 7 5 30 30 H 1.07994 * 120.00313 * 6.75283 * 15 13 3 31 31 H 1.07998 * 120.00316 * 190.06275 * 16 15 13 32 32 H 1.08004 * 123.07169 * 0.02562 * 18 17 16 33 33 H 1.07997 * 124.67592 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 1.0066 2.7822 1.7038 6 1 0.1158 2.7253 1.0958 7 6 0.9952 3.5057 2.8775 8 7 2.0801 3.5754 3.6176 9 14 -0.5613 4.3868 3.4163 10 1 -1.3782 3.4775 4.2596 11 1 -0.1998 5.5961 4.1988 12 1 -1.3432 4.7874 2.2191 13 6 2.2429 2.0166 -1.1672 14 8 2.6492 3.1646 -1.1672 15 6 2.0065 1.3495 -2.3930 16 6 2.3601 1.9358 -3.5630 17 6 3.1536 3.1102 -3.5557 18 6 2.9448 4.2328 -4.3138 19 7 3.8281 5.1786 -4.1140 20 6 4.7641 4.9489 -3.2510 21 16 4.5822 3.3945 -2.5640 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 2.5505 1.3452 2.0284 28 1 3.0643 2.7986 1.1384 29 1 2.0719 4.0841 4.4434 30 1 1.5444 0.3734 -2.3963 31 1 2.0373 1.5081 -4.5007 32 1 2.1260 4.3289 -5.0116 33 1 5.5494 5.6452 -2.9964 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493011828.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:18 Heat of formation + Delta-G solvation = 44.760086 kcal Electronic energy + Delta-G solvation = -17975.502596 eV Core-core repulsion = 15129.545204 eV Total energy + Delta-G solvation = -2845.957393 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.63230 -38.86152 -35.57979 -33.83826 -32.69783 -29.99836 -29.28248 -27.25116 -25.37447 -23.55474 -22.77546 -21.30013 -20.01827 -18.51084 -17.13968 -16.84703 -16.49850 -15.58281 -14.95019 -14.34511 -14.17652 -14.04664 -13.56645 -13.37292 -13.10409 -12.97475 -12.31344 -12.24657 -12.13364 -11.47611 -11.29774 -11.18087 -10.95949 -10.74754 -10.49711 -10.20145 -9.92898 -9.62785 -9.26412 -8.99224 -8.43584 -8.42235 -7.86988 -7.42235 -6.04197 -4.08070 0.47279 1.74751 2.07177 2.29862 3.23094 3.29222 3.36450 3.40934 3.92561 4.13108 4.45285 4.71903 5.11545 5.14631 5.30480 5.38842 5.53324 5.63153 5.69140 5.73763 5.81419 6.08796 6.27965 6.30698 6.32862 6.55110 6.76650 7.08941 7.43564 7.55412 7.92374 8.09692 8.23879 8.40850 8.89961 9.07387 9.56591 11.03689 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.019825 B = 0.006556 C = 0.005613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.052091 B = 4270.132734 C = 4987.374933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.109 3.891 3 N -0.588 5.588 4 C 0.246 3.754 5 C -0.520 4.520 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.521 3.479 14 O -0.532 6.532 15 C -0.200 4.200 16 C -0.006 4.006 17 C -0.218 4.218 18 C 0.052 3.948 19 N -0.485 5.485 20 C -0.030 4.030 21 S 0.264 5.736 22 H 0.053 0.947 23 H 0.075 0.925 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.030 0.970 28 H 0.044 0.956 29 H 0.262 0.738 30 H 0.133 0.867 31 H 0.138 0.862 32 H 0.169 0.831 33 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.787 -7.456 -12.819 15.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.015 4.015 3 N -0.318 5.318 4 C 0.126 3.874 5 C -0.559 4.559 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.311 3.689 14 O -0.414 6.414 15 C -0.224 4.224 16 C -0.029 4.029 17 C -0.340 4.340 18 C -0.106 4.106 19 N -0.200 5.200 20 C -0.322 4.322 21 S 0.523 5.477 22 H 0.072 0.928 23 H 0.094 0.906 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.150 0.850 31 H 0.156 0.844 32 H 0.186 0.814 33 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 3.765 -6.757 -12.065 14.331 hybrid contribution -1.908 0.593 -0.002 1.998 sum 1.858 -6.164 -12.067 13.676 Atomic orbital electron populations 1.22241 0.96263 1.00872 1.03483 1.21433 0.94632 0.83819 1.01623 1.48302 1.62472 1.12998 1.08046 1.19287 0.97549 0.92457 0.78066 1.21431 0.97461 1.30960 1.06072 0.92387 1.24923 0.96391 0.96286 0.96515 1.69924 1.27395 1.41796 1.14346 0.86546 0.83285 0.79306 0.78594 1.20666 1.21118 1.19953 1.17092 0.80104 0.87146 0.84512 1.90890 1.45529 1.17519 1.87422 1.22578 1.04864 1.01434 0.93563 1.20449 0.92840 0.91628 0.97946 1.23769 1.03960 1.01300 1.04998 1.22246 0.99303 0.87968 1.01055 1.65922 1.04126 1.32011 1.17922 1.28416 1.02882 1.02284 0.98631 1.83671 1.16839 1.12631 1.34591 0.92838 0.90608 0.93138 0.91854 0.90699 0.95164 0.93772 0.92786 0.84962 0.84422 0.81387 0.79432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 10.23 37.16 0.38 -2.18 16 2 C 0.11 1.70 5.81 -4.04 -0.02 1.68 16 3 N -0.59 -12.09 2.46 -178.50 -0.44 -12.53 16 4 C 0.25 6.28 5.20 -5.19 -0.03 6.25 16 5 C -0.52 -14.53 8.92 -34.44 -0.31 -14.84 16 6 H 0.06 1.63 7.42 -52.49 -0.39 1.24 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 9 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.52 10.49 7.01 -15.00 -0.11 10.39 16 14 O -0.53 -12.49 11.12 5.12 0.06 -12.43 16 15 C -0.20 -3.01 9.02 -39.28 -0.35 -3.36 16 16 C -0.01 -0.09 9.93 -39.21 -0.39 -0.48 16 17 C -0.22 -3.45 4.68 -38.67 -0.18 -3.63 16 18 C 0.05 0.83 11.38 -18.35 -0.21 0.62 16 19 N -0.49 -8.28 10.50 -15.06 -0.16 -8.44 16 20 C -0.03 -0.47 12.20 51.72 0.63 0.16 16 21 S 0.26 4.25 19.49 -107.50 -2.10 2.16 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.07 1.38 7.26 -51.92 -0.38 1.00 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.78 6.18 -51.93 -0.32 0.46 16 26 H 0.07 1.14 7.89 -51.93 -0.41 0.73 16 27 H 0.03 0.79 7.89 -51.93 -0.41 0.38 16 28 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.13 1.57 6.21 -52.49 -0.33 1.24 16 31 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.17 2.18 8.06 -52.48 -0.42 1.75 16 33 H 0.19 2.31 8.06 -52.49 -0.42 1.88 16 LS Contribution 296.61 15.07 4.47 4.47 Total: -1.00 -33.54 296.61 -7.00 -40.54 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -3.87 Total: -1.26 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -0.68 Total: -3.77 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.14 Total: -46.69 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.06 Total: -12.43 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 4.25 SS G_CDS: -2.10 Total: 2.16 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.54 -7.00 -40.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493011828.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.303 kcal (2) G-P(sol) polarization free energy of solvation -33.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds