Wall clock time and date at job start Mon Mar 30 2020 01:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.46828 * 2 1 4 4 C 1.46498 * 120.00160 * 90.00544 * 3 2 1 5 5 C 1.50705 * 109.47001 * 269.99696 * 4 3 2 6 6 H 1.07999 * 119.99896 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00168 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00123 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99798 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47378 * 90.00148 * 9 7 5 11 11 H 1.48508 * 109.47004 * 209.99828 * 9 7 5 12 12 H 1.48501 * 109.47659 * 329.99581 * 9 7 5 13 13 C 1.34781 * 120.00159 * 269.99905 * 3 2 1 14 14 O 1.21776 * 120.00297 * 180.02562 * 13 3 2 15 15 C 1.41549 * 119.99681 * 0.02562 * 13 3 2 16 16 C 1.35558 * 120.00050 * 186.75246 * 15 13 3 17 17 C 1.41731 * 119.99985 * 10.06067 * 16 15 13 18 18 C 1.37068 * 126.19587 * 224.72266 * 17 16 15 19 19 N 1.30947 * 113.85111 * 179.97438 * 18 17 16 20 20 C 1.29363 * 117.49528 * 359.97438 * 19 18 17 21 21 S 1.70918 * 110.64758 * 359.75434 * 20 19 18 22 22 H 1.09004 * 109.47356 * 180.02562 * 1 2 3 23 23 H 1.09010 * 109.47034 * 300.00208 * 1 2 3 24 24 H 1.09001 * 109.47293 * 59.99900 * 1 2 3 25 25 H 1.08997 * 109.46820 * 240.00062 * 2 1 3 26 26 H 1.08995 * 109.47333 * 119.99632 * 2 1 3 27 27 H 1.08999 * 109.47288 * 29.99138 * 4 3 2 28 28 H 1.08999 * 109.47609 * 150.00231 * 4 3 2 29 29 H 0.96998 * 120.00190 * 180.02562 * 8 7 5 30 30 H 1.07994 * 120.00313 * 6.75283 * 15 13 3 31 31 H 1.07998 * 120.00316 * 190.06275 * 16 15 13 32 32 H 1.08004 * 123.07169 * 0.02562 * 18 17 16 33 33 H 1.07997 * 124.67592 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 1.0066 2.7822 1.7038 6 1 0.1158 2.7253 1.0958 7 6 0.9952 3.5057 2.8775 8 7 2.0801 3.5754 3.6176 9 14 -0.5613 4.3868 3.4163 10 1 -1.3782 3.4775 4.2596 11 1 -0.1998 5.5961 4.1988 12 1 -1.3432 4.7874 2.2191 13 6 2.2429 2.0166 -1.1672 14 8 2.6492 3.1646 -1.1672 15 6 2.0065 1.3495 -2.3930 16 6 2.3601 1.9358 -3.5630 17 6 3.1536 3.1102 -3.5557 18 6 2.9448 4.2328 -4.3138 19 7 3.8281 5.1786 -4.1140 20 6 4.7641 4.9489 -3.2510 21 16 4.5822 3.3945 -2.5640 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 2.5505 1.3452 2.0284 28 1 3.0643 2.7986 1.1384 29 1 2.0719 4.0841 4.4434 30 1 1.5444 0.3734 -2.3963 31 1 2.0373 1.5081 -4.5007 32 1 2.1260 4.3289 -5.0116 33 1 5.5494 5.6452 -2.9964 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493011828.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:18 Heat of formation + Delta-G solvation = 22.630258 kcal Electronic energy + Delta-G solvation = -17976.462218 eV Core-core repulsion = 15129.545204 eV Total energy + Delta-G solvation = -2846.917014 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.06410 -40.14804 -37.12091 -35.17296 -34.71384 -31.50425 -30.60066 -29.01194 -26.73841 -25.20880 -24.20319 -22.75028 -21.22198 -19.86506 -18.69971 -18.45681 -18.13177 -17.07338 -16.61018 -15.99195 -15.59823 -15.43569 -14.75343 -14.69393 -14.50884 -14.27909 -14.07123 -13.69493 -13.48778 -13.25895 -12.93315 -12.72397 -12.50122 -12.48600 -12.16889 -11.80549 -11.64856 -11.26755 -10.62662 -10.56611 -10.39407 -9.79583 -9.16278 -8.97294 -8.20086 -6.33375 -0.72387 0.56960 0.86716 1.09125 1.33305 1.36101 1.45793 1.99800 2.31257 2.53828 2.67969 3.08543 3.59575 3.96598 4.05383 4.25226 4.41832 4.45936 4.51447 4.61952 4.67891 4.93400 5.04393 5.08419 5.16758 5.21298 5.30955 5.48038 5.54043 5.62989 5.92120 6.10442 6.74178 6.87183 6.87939 7.31494 7.55320 8.85678 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.019825 B = 0.006556 C = 0.005613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.052091 B = 4270.132734 C = 4987.374933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.102 3.898 3 N -0.598 5.598 4 C 0.263 3.737 5 C -0.529 4.529 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.959 3.041 10 H -0.264 1.264 11 H -0.283 1.283 12 H -0.276 1.276 13 C 0.512 3.488 14 O -0.578 6.578 15 C -0.216 4.216 16 C 0.019 3.981 17 C -0.229 4.229 18 C 0.043 3.957 19 N -0.509 5.509 20 C -0.032 4.032 21 S 0.233 5.767 22 H 0.091 0.909 23 H 0.035 0.965 24 H 0.053 0.947 25 H 0.108 0.892 26 H 0.073 0.927 27 H 0.018 0.982 28 H 0.001 0.999 29 H 0.265 0.735 30 H 0.171 0.829 31 H 0.192 0.808 32 H 0.196 0.804 33 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.259 -8.829 -14.645 17.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.020 4.020 3 N -0.328 5.328 4 C 0.142 3.858 5 C -0.568 4.568 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.784 3.216 10 H -0.189 1.189 11 H -0.208 1.208 12 H -0.201 1.201 13 C 0.305 3.695 14 O -0.463 6.463 15 C -0.240 4.240 16 C -0.003 4.003 17 C -0.352 4.352 18 C -0.114 4.114 19 N -0.224 5.224 20 C -0.323 4.323 21 S 0.492 5.508 22 H 0.110 0.890 23 H 0.054 0.946 24 H 0.072 0.928 25 H 0.126 0.874 26 H 0.091 0.909 27 H 0.036 0.964 28 H 0.019 0.981 29 H 0.074 0.926 30 H 0.189 0.811 31 H 0.209 0.791 32 H 0.213 0.787 33 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 2.223 -8.175 -13.908 16.285 hybrid contribution -1.363 1.053 0.508 1.796 sum 0.860 -7.122 -13.401 15.200 Atomic orbital electron populations 1.22164 0.95593 1.02765 1.01599 1.21765 0.95132 0.81314 1.03772 1.48286 1.63196 1.14796 1.06503 1.18684 0.95309 0.91448 0.80388 1.21683 0.97921 1.31101 1.06053 0.93037 1.25776 0.99502 0.97113 0.96725 1.70040 1.29343 1.42680 1.14814 0.85543 0.79589 0.78328 0.78128 1.18854 1.20822 1.20143 1.17970 0.78847 0.86928 0.85802 1.90875 1.47512 1.19727 1.88150 1.22537 1.07193 1.03172 0.91129 1.21030 0.90010 0.89687 0.99571 1.24137 1.04172 1.02557 1.04319 1.22732 0.99657 0.87651 1.01386 1.65967 1.04890 1.32806 1.18707 1.28852 1.03191 1.02303 0.97960 1.83797 1.18205 1.13506 1.35315 0.88995 0.94590 0.92834 0.87391 0.90855 0.96390 0.98129 0.92607 0.81125 0.79134 0.78718 0.77073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.54 10.23 71.98 0.74 -3.80 16 2 C 0.10 3.00 5.81 86.38 0.50 3.50 16 3 N -0.60 -24.63 2.46 -836.84 -2.06 -26.69 16 4 C 0.26 14.02 5.20 85.63 0.45 14.46 16 5 C -0.53 -30.34 8.92 25.60 0.23 -30.12 16 6 H 0.05 2.96 7.42 -2.91 -0.02 2.93 16 7 C 0.01 0.43 5.46 84.65 0.46 0.89 16 8 N -0.93 -56.38 13.29 21.45 0.28 -56.10 16 9 Si 0.96 45.64 29.54 68.60 2.03 47.67 16 10 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 11 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 13 C 0.51 20.33 7.01 85.06 0.60 20.93 16 14 O -0.58 -27.69 11.12 -4.59 -0.05 -27.74 16 15 C -0.22 -5.82 9.02 22.47 0.20 -5.62 16 16 C 0.02 0.43 9.93 22.51 0.22 0.66 16 17 C -0.23 -6.86 4.68 22.86 0.11 -6.76 16 18 C 0.04 1.28 11.38 84.55 0.96 2.24 16 19 N -0.51 -16.95 10.50 -201.55 -2.12 -19.06 16 20 C -0.03 -0.98 12.20 130.61 1.59 0.61 16 21 S 0.23 7.56 19.49 -56.49 -1.10 6.46 16 22 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.03 1.28 7.26 -2.38 -0.02 1.26 16 24 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.11 2.22 6.18 -2.39 -0.01 2.20 16 26 H 0.07 2.15 7.89 -2.39 -0.02 2.13 16 27 H 0.02 0.98 7.89 -2.39 -0.02 0.97 16 28 H 0.00 0.04 7.42 -2.39 -0.02 0.02 16 29 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 30 H 0.17 3.16 6.21 -2.91 -0.02 3.15 16 31 H 0.19 2.40 8.06 -2.91 -0.02 2.38 16 32 H 0.20 4.50 8.06 -2.91 -0.02 4.48 16 33 H 0.21 5.15 8.06 -2.91 -0.02 5.12 16 Total: -1.00 -76.34 296.61 4.16 -72.18 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: 1.11 Total: 6.29 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 6.06 Total: -3.00 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -3.89 Total: -101.84 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.05 Total: -27.74 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Atomic # 16 Polarization: 7.56 SS G_CDS: -1.10 Total: 6.46 kcal Total: -76.34 4.16 -72.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493011828.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.807 kcal (2) G-P(sol) polarization free energy of solvation -76.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds