Wall clock time and date at job start Mon Mar 30 2020 01:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46504 * 109.47218 * 2 1 4 4 C 1.36775 * 119.99761 * 263.40681 * 3 2 1 5 5 H 1.08008 * 120.00117 * 195.11362 * 4 3 2 6 6 C 1.39102 * 120.00405 * 15.11637 * 4 3 2 7 7 N 1.31329 * 119.99728 * 14.61067 * 6 4 3 8 8 Si 1.86804 * 120.00228 * 194.61010 * 6 4 3 9 9 H 1.48495 * 109.46989 * 89.99865 * 8 6 4 10 10 H 1.48501 * 109.47014 * 210.00200 * 8 6 4 11 11 H 1.48503 * 109.47008 * 329.99832 * 8 6 4 12 12 C 1.34770 * 119.99884 * 83.40890 * 3 2 1 13 13 O 1.21572 * 120.00199 * 174.07200 * 12 3 2 14 14 C 1.47985 * 120.00119 * 354.07681 * 12 3 2 15 15 C 1.39250 * 119.68447 * 187.59507 * 14 12 3 16 16 C 1.38772 * 119.22775 * 179.97438 * 15 14 12 17 17 C 1.38296 * 118.60364 * 0.02562 * 16 15 14 18 18 C 1.39511 * 119.30404 * 0.02562 * 17 16 15 19 19 S 1.76205 * 119.63925 * 179.97438 * 18 17 16 20 20 C 1.81404 * 102.99919 * 173.58455 * 19 18 17 21 21 N 1.32157 * 120.72346 * 0.25220 * 18 17 16 22 22 H 1.09008 * 109.47132 * 285.33645 * 1 2 3 23 23 H 1.09007 * 109.47353 * 45.33377 * 1 2 3 24 24 H 1.08995 * 109.47269 * 165.33525 * 1 2 3 25 25 H 1.09001 * 109.47142 * 239.99997 * 2 1 3 26 26 H 1.08998 * 109.47395 * 120.00274 * 2 1 3 27 27 H 0.97000 * 119.99382 * 180.02562 * 7 6 4 28 28 H 1.08000 * 120.38658 * 0.02562 * 15 14 12 29 29 H 1.08009 * 120.69672 * 179.97438 * 16 15 14 30 30 H 1.08004 * 120.35047 * 180.02562 * 17 16 15 31 31 H 1.09001 * 109.47498 * 52.25709 * 20 19 18 32 32 H 1.08998 * 109.47132 * 172.26089 * 20 19 18 33 33 H 1.08998 * 109.46749 * 292.25608 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3745 1.9806 -1.1767 5 1 2.9554 2.8911 -1.1648 6 6 1.9886 1.4177 -2.3888 7 7 1.0574 0.4920 -2.4159 8 14 2.7950 1.9783 -3.9778 9 1 3.9880 1.1372 -4.2510 10 1 1.8284 1.8449 -5.0973 11 1 3.2096 3.3983 -3.8484 12 6 2.1166 2.0612 1.1594 13 8 2.6218 3.1669 1.1748 14 6 1.6098 1.4619 2.4140 15 6 1.5684 2.2274 3.5764 16 6 1.0908 1.6560 4.7474 17 6 0.6710 0.3387 4.7180 18 6 0.7397 -0.3733 3.5203 19 16 0.2078 -2.0525 3.4729 20 6 0.3030 -2.4611 1.7081 21 7 1.2045 0.1962 2.4220 22 1 -0.3634 0.2718 0.9911 23 1 -0.3634 0.7225 -0.7309 24 1 -0.3633 -0.9941 -0.2602 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 0.7886 0.0993 -3.2611 28 1 1.9033 3.2541 3.5666 29 1 1.0487 2.2279 5.6627 30 1 0.2939 -0.1340 5.6129 31 1 1.2928 -2.2066 1.3290 32 1 0.1251 -3.5278 1.5720 33 1 -0.4517 -1.8945 1.1628 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592586449.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:31 Heat of formation + Delta-G solvation = 19.928317 kcal Electronic energy + Delta-G solvation = -18633.429755 eV Core-core repulsion = 15786.395576 eV Total energy + Delta-G solvation = -2847.034179 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.54033 -39.62274 -37.21154 -34.31656 -33.20426 -32.24029 -31.66708 -29.31869 -27.39056 -25.18347 -24.60374 -23.85862 -21.62895 -19.06909 -18.53540 -18.25498 -17.10086 -16.79951 -16.41981 -16.08126 -15.80951 -15.56672 -15.14083 -14.89917 -14.48756 -14.17602 -13.91511 -13.68405 -13.35312 -13.04681 -12.83705 -12.78638 -12.64648 -12.20543 -12.08633 -11.81221 -11.47750 -11.04477 -10.90460 -10.73994 -10.52988 -10.14790 -9.66415 -8.49235 -8.35052 -5.96012 -0.25514 0.20486 0.55956 1.32929 1.36403 1.39975 1.51764 1.93789 2.22168 2.77959 2.91229 3.15419 3.47579 3.94587 4.11173 4.14372 4.27645 4.38239 4.43270 4.55278 4.73581 4.91635 5.00101 5.04294 5.12136 5.18413 5.26619 5.34657 5.50008 5.60395 5.90216 6.02805 6.41518 6.67906 7.08087 7.37946 7.96346 8.55803 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.024573 B = 0.007351 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.207327 B = 3808.172739 C = 4804.138971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.124 3.876 3 N -0.416 5.416 4 C -0.350 4.350 5 H 0.076 0.924 6 C 0.004 3.996 7 N -0.859 5.859 8 Si 0.995 3.005 9 H -0.266 1.266 10 H -0.267 1.267 11 H -0.277 1.277 12 C 0.450 3.550 13 O -0.639 6.639 14 C 0.095 3.905 15 C -0.144 4.144 16 C -0.049 4.049 17 C -0.138 4.138 18 C 0.087 3.913 19 S -0.062 6.062 20 C -0.147 4.147 21 N -0.468 5.468 22 H 0.026 0.974 23 H 0.035 0.965 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.277 0.723 28 H 0.136 0.864 29 H 0.187 0.813 30 H 0.175 0.825 31 H 0.079 0.921 32 H 0.127 0.873 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.061 -7.964 10.725 13.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.002 3.998 3 N -0.130 5.130 4 C -0.478 4.478 5 H 0.094 0.906 6 C -0.201 4.201 7 N -0.495 5.495 8 Si 0.818 3.182 9 H -0.191 1.191 10 H -0.192 1.192 11 H -0.202 1.202 12 C 0.240 3.760 13 O -0.529 6.529 14 C -0.044 4.044 15 C -0.168 4.168 16 C -0.076 4.076 17 C -0.163 4.163 18 C -0.163 4.163 19 S 0.176 5.824 20 C -0.315 4.315 21 N -0.185 5.185 22 H 0.045 0.955 23 H 0.054 0.946 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.109 0.891 27 H 0.087 0.913 28 H 0.154 0.846 29 H 0.204 0.796 30 H 0.192 0.808 31 H 0.098 0.902 32 H 0.145 0.855 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.251 -8.898 10.552 14.442 hybrid contribution 0.778 1.841 -1.445 2.466 sum -3.473 -7.056 9.107 12.033 Atomic orbital electron populations 1.21751 0.95801 1.00798 0.97766 1.22005 0.95413 0.81175 1.01175 1.44037 1.51383 1.12549 1.05047 1.19834 1.33520 1.10576 0.83863 0.90563 1.26135 0.95529 0.96562 1.01884 1.70231 1.24993 1.26093 1.28232 0.84923 0.78331 0.78539 0.76450 1.19115 1.19205 1.20188 1.18225 0.87508 0.85864 0.84426 1.90525 1.52756 1.22938 1.86726 1.21179 0.98196 0.90616 0.94422 1.22108 1.00453 1.01686 0.92569 1.21868 0.93106 0.94449 0.98179 1.22153 1.01229 0.94854 0.98107 1.23784 0.99317 1.00486 0.92707 1.84953 1.81757 1.02959 1.12734 1.24040 1.06714 1.06708 0.94079 1.68590 1.11871 1.10751 1.27282 0.95475 0.94581 0.91808 0.91276 0.89144 0.91261 0.84594 0.79626 0.80762 0.90222 0.85455 0.89257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.53 6.98 71.98 0.50 -4.03 16 2 C 0.12 5.90 4.35 86.38 0.38 6.28 16 3 N -0.42 -23.09 2.63 -638.70 -1.68 -24.77 16 4 C -0.35 -20.44 9.43 84.13 0.79 -19.65 16 5 H 0.08 4.78 7.28 -2.91 -0.02 4.76 16 6 C 0.00 0.19 5.08 84.98 0.43 0.62 16 7 N -0.86 -43.62 8.35 21.69 0.18 -43.44 16 8 Si 0.99 41.92 29.58 68.60 2.03 43.94 16 9 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 10 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 11 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 12 C 0.45 24.70 7.54 86.83 0.65 25.35 16 13 O -0.64 -38.96 15.96 -3.94 -0.06 -39.03 16 14 C 0.10 4.18 6.46 41.81 0.27 4.45 16 15 C -0.14 -5.15 9.63 22.64 0.22 -4.93 16 16 C -0.05 -1.22 10.15 22.41 0.23 -1.00 16 17 C -0.14 -3.36 9.84 22.59 0.22 -3.14 16 18 C 0.09 2.70 6.99 84.95 0.59 3.30 16 19 S -0.06 -1.54 22.55 -56.49 -1.27 -2.81 16 20 C -0.15 -3.72 8.97 113.37 1.02 -2.71 16 21 N -0.47 -18.12 3.19 -181.35 -0.58 -18.70 16 22 H 0.03 1.15 6.03 -2.38 -0.01 1.14 16 23 H 0.04 1.82 6.75 -2.38 -0.02 1.81 16 24 H 0.06 2.42 6.31 -2.39 -0.02 2.41 16 25 H 0.07 3.49 5.96 -2.39 -0.01 3.48 16 26 H 0.09 4.02 3.60 -2.39 -0.01 4.01 16 27 H 0.28 13.00 8.31 -92.71 -0.77 12.23 16 28 H 0.14 4.96 7.65 -2.91 -0.02 4.94 16 29 H 0.19 2.79 8.06 -2.91 -0.02 2.76 16 30 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 31 H 0.08 2.33 5.94 -2.39 -0.01 2.32 16 32 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.09 2.48 4.84 -2.39 -0.01 2.47 16 Total: -1.00 -69.03 275.94 5.07 -63.96 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 1.15 Total: 16.29 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: 5.31 Total: 4.55 kcal Atomic # 7 Polarization: -84.83 SS G_CDS: -2.08 Total: -86.91 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -0.06 Total: -39.03 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -1.27 Total: -2.81 kcal Total: -69.03 5.07 -63.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592586449.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.886 kcal (2) G-P(sol) polarization free energy of solvation -69.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds