Wall clock time and date at job start Mon Mar 30 2020 01:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81006 * 1 3 3 C 1.76193 * 99.99772 * 2 1 4 4 N 1.32496 * 119.15957 * 180.02562 * 3 2 1 5 5 C 1.32283 * 120.79371 * 179.97438 * 4 3 2 6 6 C 1.39031 * 119.13503 * 359.97438 * 5 4 3 7 7 O 1.36031 * 120.76468 * 179.97438 * 6 5 4 8 8 C 1.42903 * 116.99639 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.46724 * 179.97438 * 8 7 6 10 10 C 1.50704 * 115.55162 * 294.87044 * 9 8 7 11 11 H 1.08001 * 119.99758 * 99.48182 * 10 9 8 12 12 C 1.37877 * 120.00036 * 279.20579 * 10 9 8 13 13 N 1.31519 * 120.00052 * 355.32964 * 12 10 9 14 14 Si 1.86794 * 120.00166 * 175.32718 * 12 10 9 15 15 H 1.48508 * 109.47258 * 90.00045 * 14 12 10 16 16 H 1.48496 * 109.47385 * 210.00149 * 14 12 10 17 17 H 1.48500 * 109.47259 * 330.00493 * 14 12 10 18 18 C 1.53001 * 117.51877 * 80.57710 * 9 8 7 19 19 C 1.53000 * 60.00051 * 107.48042 * 18 9 8 20 20 C 1.39026 * 118.46432 * 0.25444 * 6 5 4 21 21 N 1.32282 * 119.13707 * 359.48515 * 20 6 5 22 22 H 1.08999 * 109.46735 * 299.99476 * 1 2 3 23 23 H 1.08998 * 109.46952 * 59.99545 * 1 2 3 24 24 H 1.09001 * 109.46840 * 179.97438 * 1 2 3 25 25 H 1.07997 * 120.43129 * 180.02562 * 5 4 3 26 26 H 1.09000 * 109.47216 * 59.99986 * 8 7 6 27 27 H 1.09000 * 109.47378 * 299.99480 * 8 7 6 28 28 H 0.96998 * 119.99868 * 179.97438 * 13 12 10 29 29 H 1.08999 * 117.49791 * 214.96725 * 18 9 8 30 30 H 1.08994 * 117.49636 * 359.97438 * 18 9 8 31 31 H 1.09008 * 117.49526 * 252.51166 * 19 18 9 32 32 H 1.09001 * 117.52299 * 107.48381 * 19 18 9 33 33 H 1.07997 * 120.42995 * 179.73077 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 7 3.3675 2.1701 -0.0005 5 6 3.6342 3.4657 -0.0010 6 6 2.5812 4.3736 -0.0016 7 8 2.8175 5.7132 -0.0016 8 6 1.6762 6.5732 -0.0016 9 6 2.1371 8.0321 -0.0010 10 6 2.8778 8.4793 1.2329 11 1 3.9567 8.5285 1.2269 12 6 2.1780 8.8310 2.3676 13 7 0.8634 8.8648 2.3453 14 14 3.0968 9.2594 3.9365 15 1 3.3815 10.7167 3.9612 16 1 2.2647 8.8977 5.1120 17 1 4.3748 8.5046 3.9835 18 6 2.5622 8.6398 -1.3393 19 6 1.2384 9.0572 -0.6957 20 6 1.2813 3.8806 0.0039 21 7 1.0888 2.5719 -0.0010 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 4.6566 3.8138 -0.0019 26 1 1.0768 6.3815 0.8884 27 1 1.0768 6.3816 -0.8916 28 1 0.3710 9.1119 3.1437 29 1 3.3777 9.3629 -1.3273 30 1 2.5140 8.0000 -2.2204 31 1 0.3190 8.6920 -1.1536 32 1 1.1826 10.0548 -0.2601 33 1 0.4397 4.5574 0.0080 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596279237.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:25 Heat of formation + Delta-G solvation = 17.222963 kcal Electronic energy + Delta-G solvation = -17457.339479 eV Core-core repulsion = 14610.187987 eV Total energy + Delta-G solvation = -2847.151492 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.18831 -39.77839 -37.79870 -34.96361 -34.03989 -32.09875 -29.83642 -28.67339 -27.42322 -25.65909 -24.88837 -22.92706 -21.25934 -19.65124 -19.20030 -18.85508 -17.90177 -17.10198 -16.58513 -16.32452 -15.87661 -15.64852 -15.19927 -15.00467 -14.71140 -14.25062 -14.00291 -13.61517 -13.44659 -13.04220 -12.89415 -12.74071 -12.50565 -12.34133 -12.08183 -12.04668 -11.61518 -11.40230 -10.97783 -10.49009 -10.46757 -10.30038 -10.04951 -8.58721 -8.15915 -6.25415 -0.26358 -0.18131 0.22718 1.21834 1.38556 1.42077 1.50606 2.08814 2.40778 2.48603 3.05230 3.13675 3.22911 3.52013 3.55825 3.80061 4.14669 4.34448 4.36693 4.38751 4.40452 4.62199 4.65340 4.72082 4.95039 4.98381 4.99907 5.20657 5.47768 5.59045 5.63377 5.74374 6.23995 6.38155 6.66589 6.78329 7.42950 8.92104 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.025311 B = 0.004620 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.968484 B = 6059.551528 C = 6395.913214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.008 6.008 3 C 0.224 3.776 4 N -0.479 5.479 5 C 0.130 3.870 6 C 0.028 3.972 7 O -0.293 6.293 8 C 0.112 3.888 9 C 0.004 3.996 10 C -0.504 4.504 11 H 0.049 0.951 12 C 0.030 3.970 13 N -0.905 5.905 14 Si 0.942 3.058 15 H -0.275 1.275 16 H -0.284 1.284 17 H -0.273 1.273 18 C -0.183 4.183 19 C -0.142 4.142 20 C 0.070 3.930 21 N -0.493 5.493 22 H 0.084 0.916 23 H 0.087 0.913 24 H 0.136 0.864 25 H 0.200 0.800 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.261 0.739 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.559 -13.227 -5.504 14.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.223 5.777 3 C -0.150 4.150 4 N -0.195 5.195 5 C -0.041 4.041 6 C -0.026 4.026 7 O -0.203 6.203 8 C 0.037 3.963 9 C 0.004 3.996 10 C -0.541 4.541 11 H 0.067 0.933 12 C -0.171 4.171 13 N -0.542 5.542 14 Si 0.768 3.232 15 H -0.200 1.200 16 H -0.210 1.210 17 H -0.197 1.197 18 C -0.220 4.220 19 C -0.180 4.180 20 C -0.099 4.099 21 N -0.211 5.211 22 H 0.103 0.897 23 H 0.106 0.894 24 H 0.154 0.846 25 H 0.217 0.783 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -1.007 -15.020 -5.389 15.990 hybrid contribution -0.589 2.700 1.080 2.967 sum -1.597 -12.320 -4.309 13.149 Atomic orbital electron populations 1.23611 0.91895 1.07983 1.06822 1.85542 1.09315 0.91473 1.91399 1.25246 0.87193 1.01936 1.00666 1.68562 1.21558 1.15508 1.13898 1.23083 1.00375 0.85965 0.94659 1.21111 0.96327 0.86692 0.98501 1.86250 1.36183 1.11300 1.86588 1.22453 0.85296 0.89218 0.99348 1.18832 1.00822 0.88211 0.91732 1.20617 0.92388 1.44729 0.96414 0.93273 1.25564 0.95563 0.94891 1.01076 1.70056 1.06488 1.48310 1.29380 0.85797 0.78879 0.78603 0.79878 1.20036 1.20984 1.19735 1.22984 0.98189 1.04172 0.96637 1.22480 0.93007 0.99504 1.02970 1.23601 0.96425 0.92365 0.97515 1.68598 1.34548 1.03451 1.14457 0.89711 0.89376 0.84620 0.78311 0.93305 0.92069 0.92974 0.90310 0.88884 0.89808 0.91517 0.80000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 9.62 113.37 1.09 -1.19 16 2 S -0.01 -0.20 22.89 -56.49 -1.29 -1.49 16 3 C 0.22 6.98 7.85 180.46 1.42 8.39 16 4 N -0.48 -15.54 10.39 -196.20 -2.04 -17.58 16 5 C 0.13 4.11 11.26 84.82 0.96 5.06 16 6 C 0.03 0.97 6.73 22.65 0.15 1.12 16 7 O -0.29 -11.62 10.09 -93.90 -0.95 -12.57 16 8 C 0.11 4.57 4.59 71.98 0.33 4.90 16 9 C 0.00 0.21 1.61 -52.93 -0.09 0.12 16 10 C -0.50 -26.54 8.75 25.60 0.22 -26.31 16 11 H 0.05 2.65 7.82 -2.91 -0.02 2.63 16 12 C 0.03 1.57 5.44 84.65 0.46 2.03 16 13 N -0.90 -48.96 12.86 21.45 0.28 -48.69 16 14 Si 0.94 42.42 29.54 68.60 2.03 44.44 16 15 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 16 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 18 C -0.18 -7.26 9.96 30.59 0.30 -6.96 16 19 C -0.14 -6.08 9.39 30.60 0.29 -5.79 16 20 C 0.07 2.28 10.30 84.81 0.87 3.15 16 21 N -0.49 -15.51 9.12 -196.20 -1.79 -17.30 16 22 H 0.08 1.57 8.11 -2.40 -0.02 1.55 16 23 H 0.09 1.56 8.11 -2.40 -0.02 1.54 16 24 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.20 5.24 8.06 -2.91 -0.02 5.22 16 26 H 0.05 2.18 7.70 -2.39 -0.02 2.16 16 27 H 0.06 2.15 7.67 -2.39 -0.02 2.13 16 28 H 0.26 13.60 8.31 -92.71 -0.77 12.83 16 29 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 30 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 31 H 0.08 3.21 8.14 -2.38 -0.02 3.19 16 32 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 33 H 0.18 5.45 6.45 -2.91 -0.02 5.43 16 Total: -1.00 -59.30 304.64 3.35 -55.94 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 1.11 Total: 12.72 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: 6.01 Total: -15.48 kcal Atomic # 7 Polarization: -80.02 SS G_CDS: -3.55 Total: -83.57 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -0.95 Total: -12.57 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: -0.20 SS G_CDS: -1.29 Total: -1.49 kcal Total: -59.30 3.35 -55.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596279237.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.167 kcal (2) G-P(sol) polarization free energy of solvation -59.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds