Wall clock time and date at job start Mon Mar 30 2020 00:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 120.00014 * 2 1 4 4 N 1.46500 * 109.47338 * 125.00033 * 3 2 1 5 5 C 1.46497 * 119.99985 * 270.00058 * 4 3 2 6 6 C 1.50700 * 109.47301 * 269.99774 * 5 4 3 7 7 H 1.08004 * 119.99585 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00314 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99990 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00044 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46843 * 90.00330 * 10 8 6 12 12 H 1.48496 * 109.47373 * 210.00131 * 10 8 6 13 13 H 1.48497 * 109.47197 * 330.00619 * 10 8 6 14 14 C 1.34775 * 119.99915 * 89.99699 * 4 3 2 15 15 O 1.21280 * 119.99969 * 180.02562 * 14 4 3 16 16 C 1.50695 * 120.00067 * 0.02562 * 14 4 3 17 17 C 1.50706 * 109.47238 * 180.02562 * 16 14 4 18 18 C 1.33635 * 122.75319 * 124.73143 * 17 16 14 19 19 S 1.76192 * 107.92524 * 179.97438 * 18 17 16 20 20 C 1.70976 * 90.28427 * 0.27803 * 19 18 17 21 21 N 1.29027 * 110.16712 * 359.83656 * 20 19 18 22 22 H 1.08000 * 120.00236 * 180.02562 * 1 2 3 23 23 H 1.07997 * 119.99643 * 359.97438 * 1 2 3 24 24 H 1.07997 * 119.99643 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47452 * 5.00023 * 3 2 1 26 26 H 1.09001 * 109.47038 * 245.00093 * 3 2 1 27 27 H 1.09001 * 109.47253 * 29.99529 * 5 4 3 28 28 H 1.09000 * 109.47677 * 149.99818 * 5 4 3 29 29 H 0.96999 * 120.00437 * 179.97438 * 9 8 6 30 30 H 1.08997 * 109.47434 * 59.99616 * 16 14 4 31 31 H 1.08998 * 109.47220 * 299.99642 * 16 14 4 32 32 H 1.08001 * 126.03202 * 0.03585 * 18 17 16 33 33 H 1.08001 * 124.91761 * 179.84059 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8443 3.3436 2.4804 7 1 3.3033 3.8370 1.6364 8 6 2.5185 4.0668 3.6082 9 7 1.9582 3.4662 4.6352 10 14 2.8729 5.8995 3.6772 11 1 1.7007 6.6502 3.1599 12 1 3.1362 6.3002 5.0827 13 1 4.0635 6.2052 2.8440 14 6 4.2497 0.8661 0.9824 15 8 5.0197 0.8879 1.9191 16 6 4.6972 0.3183 -0.3482 17 6 6.1314 -0.1337 -0.2488 18 6 6.5228 -1.3720 -0.5639 19 16 8.2629 -1.4728 -0.3066 20 6 8.2900 0.1578 0.2071 21 7 7.1015 0.6580 0.1624 22 1 -0.5400 -0.9353 0.0004 23 1 -0.5399 0.9353 0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3587 2.1316 0.0896 26 1 2.6213 1.4026 -0.9314 27 1 1.4888 1.6967 2.5459 28 1 3.0990 1.3604 3.2260 29 1 1.7292 3.9748 5.4288 30 1 4.6125 1.0951 -1.1081 31 1 4.0681 -0.5285 -0.6227 32 1 5.8851 -2.1697 -0.9154 33 1 9.1739 0.6918 0.5231 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597683395.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:24 Heat of formation + Delta-G solvation = 11.905870 kcal Electronic energy + Delta-G solvation = -17639.790915 eV Core-core repulsion = 14792.408857 eV Total energy + Delta-G solvation = -2847.382058 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.24829 -39.98334 -37.12714 -35.15027 -33.63105 -33.12945 -30.19228 -28.60291 -26.83392 -25.90379 -24.60218 -21.30543 -20.61667 -20.03984 -18.75610 -18.63974 -17.84928 -17.21506 -16.71018 -16.14780 -16.09671 -15.44299 -15.30990 -14.50871 -14.36406 -14.15733 -14.09493 -13.91294 -13.38861 -13.13276 -12.94995 -12.80665 -12.58777 -12.32028 -12.20976 -12.14690 -11.67306 -10.65075 -10.64610 -10.46922 -10.29214 -10.27828 -9.68391 -9.42168 -8.22600 -6.37111 -0.15008 0.57854 0.81707 1.33917 1.37126 1.37747 1.48344 1.85817 1.90201 2.36277 2.62470 3.06618 3.34502 3.83188 4.02593 4.11967 4.26844 4.31312 4.44154 4.47190 4.53734 4.77245 4.88670 5.02042 5.09051 5.18616 5.24607 5.53884 5.74433 5.78939 6.00039 6.07757 6.70523 6.81286 6.94838 7.29130 7.54648 8.84437 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.017511 B = 0.005722 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.577863 B = 4892.183896 C = 6118.290464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.181 4.181 3 C 0.131 3.869 4 N -0.601 5.601 5 C 0.267 3.733 6 C -0.541 4.541 7 H 0.050 0.950 8 C 0.008 3.992 9 N -0.929 5.929 10 Si 0.966 3.034 11 H -0.260 1.260 12 H -0.280 1.280 13 H -0.276 1.276 14 C 0.500 3.500 15 O -0.583 6.583 16 C -0.056 4.056 17 C 0.054 3.946 18 C -0.250 4.250 19 S 0.162 5.838 20 C 0.005 3.995 21 N -0.496 5.496 22 H 0.117 0.883 23 H 0.095 0.905 24 H 0.120 0.880 25 H 0.074 0.926 26 H 0.109 0.891 27 H 0.021 0.979 28 H -0.008 1.008 29 H 0.267 0.733 30 H 0.121 0.879 31 H 0.143 0.857 32 H 0.210 0.790 33 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.488 -11.470 -16.026 20.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.201 4.201 3 C 0.009 3.991 4 N -0.332 5.332 5 C 0.146 3.854 6 C -0.580 4.580 7 H 0.069 0.931 8 C -0.191 4.191 9 N -0.569 5.569 10 Si 0.791 3.209 11 H -0.185 1.185 12 H -0.205 1.205 13 H -0.201 1.201 14 C 0.289 3.711 15 O -0.463 6.463 16 C -0.098 4.098 17 C -0.078 4.078 18 C -0.389 4.389 19 S 0.414 5.586 20 C -0.293 4.293 21 N -0.210 5.210 22 H 0.135 0.865 23 H 0.114 0.886 24 H 0.138 0.862 25 H 0.092 0.908 26 H 0.127 0.873 27 H 0.039 0.961 28 H 0.010 0.990 29 H 0.076 0.924 30 H 0.139 0.861 31 H 0.160 0.840 32 H 0.227 0.773 33 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 6.527 -11.617 -15.305 20.293 hybrid contribution -0.772 1.437 0.790 1.813 sum 5.755 -10.180 -14.514 18.639 Atomic orbital electron populations 1.24043 0.95659 1.02768 0.98561 1.23353 0.96733 0.98330 1.01634 1.20856 0.92707 0.96428 0.89098 1.48194 1.11723 1.60275 1.13047 1.18626 0.93657 0.92530 0.80627 1.21712 1.40324 0.94586 1.01344 0.93149 1.25845 0.94690 1.03742 0.94838 1.70052 1.42957 1.38064 1.05798 0.85435 0.78839 0.79216 0.77440 1.18513 1.20546 1.20098 1.21078 0.81316 0.77863 0.90886 1.90656 1.53685 1.57770 1.44213 1.20362 0.90636 1.04082 0.94688 1.19934 0.95675 0.90782 1.01373 1.27198 0.99372 1.01228 1.11119 1.83511 1.03422 1.12514 1.59114 1.28805 0.98952 0.97578 1.04000 1.66031 1.00306 1.39262 1.15416 0.86475 0.88636 0.86175 0.90793 0.87337 0.96093 0.98963 0.92434 0.86107 0.83962 0.77343 0.76817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.03 14.32 67.78 0.97 -3.06 16 2 C -0.18 -4.66 9.74 25.64 0.25 -4.41 16 3 C 0.13 4.10 5.65 85.63 0.48 4.58 16 4 N -0.60 -26.30 2.44 -830.53 -2.03 -28.33 16 5 C 0.27 14.99 5.16 85.63 0.44 15.43 16 6 C -0.54 -32.47 9.39 25.60 0.24 -32.23 16 7 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 8 C 0.01 0.45 5.46 84.66 0.46 0.92 16 9 N -0.93 -57.84 13.29 21.45 0.28 -57.55 16 10 Si 0.97 46.53 29.54 68.60 2.03 48.55 16 11 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 14 C 0.50 21.82 7.64 87.66 0.67 22.49 16 15 O -0.58 -32.31 15.02 -3.03 -0.05 -32.35 16 16 C -0.06 -1.63 4.75 29.10 0.14 -1.49 16 17 C 0.05 1.67 5.64 41.52 0.23 1.90 16 18 C -0.25 -5.58 11.07 66.77 0.74 -4.84 16 19 S 0.16 3.16 23.22 -56.49 -1.31 1.85 16 20 C 0.00 0.12 12.23 130.65 1.60 1.72 16 21 N -0.50 -17.69 9.68 -191.54 -1.85 -19.55 16 22 H 0.12 2.19 8.06 -2.91 -0.02 2.17 16 23 H 0.10 2.28 7.84 -2.91 -0.02 2.26 16 24 H 0.12 2.69 7.83 -2.91 -0.02 2.67 16 25 H 0.07 2.49 7.72 -2.39 -0.02 2.47 16 26 H 0.11 2.60 6.44 -2.39 -0.02 2.58 16 27 H 0.02 1.20 8.07 -2.39 -0.02 1.18 16 28 H -0.01 -0.51 7.42 -2.39 -0.02 -0.52 16 29 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 30 H 0.12 3.07 7.40 -2.39 -0.02 3.05 16 31 H 0.14 2.86 7.66 -2.39 -0.02 2.85 16 32 H 0.21 2.99 8.06 -2.91 -0.02 2.96 16 33 H 0.22 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -82.99 306.23 4.41 -78.59 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 1.10 Total: 7.78 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 6.23 Total: 1.01 kcal Atomic # 7 Polarization: -101.83 SS G_CDS: -3.59 Total: -105.42 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -0.05 Total: -32.35 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.55 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -1.31 Total: 1.85 kcal Total: -82.99 4.41 -78.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597683395.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.492 kcal (2) G-P(sol) polarization free energy of solvation -82.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds