Wall clock time and date at job start Mon Mar 30 2020 01:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47641 * 2 1 4 4 C 1.36891 * 119.99605 * 274.77546 * 3 2 1 5 5 H 1.08006 * 119.99417 * 175.09513 * 4 3 2 6 6 C 1.39010 * 120.00339 * 355.08627 * 4 3 2 7 7 N 1.31391 * 120.00148 * 26.65332 * 6 4 3 8 8 Si 1.86801 * 119.99889 * 206.65405 * 6 4 3 9 9 H 1.48500 * 109.47268 * 89.99975 * 8 6 4 10 10 H 1.48501 * 109.46879 * 209.99938 * 8 6 4 11 11 H 1.48500 * 109.47322 * 329.99844 * 8 6 4 12 12 C 1.34776 * 119.99850 * 94.76677 * 3 2 1 13 13 O 1.21727 * 119.99490 * 185.37388 * 12 3 2 14 14 C 1.46562 * 120.00028 * 5.37661 * 12 3 2 15 15 C 1.36773 * 126.17920 * 330.66146 * 14 12 3 16 16 N 1.30943 * 113.92008 * 179.97438 * 15 14 12 17 17 C 1.29380 * 117.46683 * 0.02562 * 16 15 14 18 18 C 1.50701 * 124.69903 * 179.97438 * 17 16 15 19 19 C 1.52998 * 117.50138 * 8.64138 * 18 17 16 20 20 C 1.52993 * 60.00095 * 252.51337 * 19 18 17 21 21 S 1.70917 * 110.59551 * 359.97438 * 17 16 15 22 22 H 1.09007 * 109.46997 * 65.77026 * 1 2 3 23 23 H 1.08994 * 109.47522 * 185.77112 * 1 2 3 24 24 H 1.09001 * 109.47210 * 305.77516 * 1 2 3 25 25 H 1.09004 * 109.47297 * 239.99701 * 2 1 3 26 26 H 1.09002 * 109.47388 * 120.00009 * 2 1 3 27 27 H 0.96990 * 120.00589 * 180.02562 * 7 6 4 28 28 H 1.08001 * 123.04379 * 0.04781 * 15 14 12 29 29 H 1.09004 * 115.54708 * 154.35485 * 18 17 16 30 30 H 1.09004 * 117.49771 * 0.02562 * 19 18 17 31 31 H 1.09001 * 117.49600 * 145.02056 * 19 18 17 32 32 H 1.09006 * 117.50087 * 252.51071 * 20 19 18 33 33 H 1.08998 * 117.51863 * 107.48508 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1536 2.0593 -1.1814 5 1 2.4374 3.1014 -1.1765 6 6 1.9256 1.4067 -2.3875 7 7 1.1136 0.3748 -2.4329 8 14 2.7739 1.9969 -3.9436 9 1 4.0741 1.2956 -4.0951 10 1 1.9136 1.7037 -5.1180 11 1 3.0084 3.4606 -3.8550 12 6 2.3345 1.9842 1.1632 13 8 2.6465 3.1607 1.1736 14 6 2.3028 1.2232 2.4154 15 6 1.4939 0.1552 2.6908 16 7 1.6659 -0.3461 3.8882 17 6 2.5534 0.2115 4.6468 18 6 2.8830 -0.2306 6.0493 19 6 2.2634 -1.5402 6.5413 20 6 1.7548 -0.2026 7.0824 21 16 3.3000 1.5188 3.8378 22 1 -0.3633 0.4218 -0.9372 23 1 -0.3634 -1.0224 0.1033 24 1 -0.3634 0.6008 0.8338 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.9548 -0.0808 -3.2743 28 1 0.7790 -0.2398 1.9843 29 1 3.8879 0.0121 6.3947 30 1 1.6177 -2.0823 5.8503 31 1 2.8608 -2.1594 7.2104 32 1 2.0175 0.0583 8.1076 33 1 0.7742 0.1359 6.7477 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609166478.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:40 Heat of formation + Delta-G solvation = 65.611542 kcal Electronic energy + Delta-G solvation = -17891.572908 eV Core-core repulsion = 15046.519703 eV Total energy + Delta-G solvation = -2845.053206 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.73661 -38.37426 -36.61895 -35.23345 -32.22346 -30.12466 -29.29874 -26.34180 -24.80274 -22.62261 -22.39270 -22.06828 -20.59527 -18.74559 -17.50983 -17.00949 -16.12220 -15.42869 -14.97601 -14.56701 -14.36775 -14.09061 -13.71991 -13.53224 -12.86621 -12.33728 -12.09168 -11.99498 -11.53691 -11.36982 -11.23992 -10.97743 -10.84823 -10.72258 -10.58989 -10.45301 -10.35908 -9.98732 -9.38387 -8.99960 -8.89590 -8.54856 -8.18760 -8.01285 -6.61566 -3.89972 0.83562 1.68615 2.23243 2.95462 3.12376 3.16134 3.20957 3.87602 3.96195 4.05672 4.34889 4.80082 4.84087 4.84909 4.90753 4.98867 5.57125 5.58771 5.62016 5.76886 5.89730 6.01222 6.07258 6.16447 6.46023 6.48530 6.61569 6.67075 7.14727 7.32326 7.60710 7.86913 8.13404 8.29641 8.96089 9.18577 9.81368 10.33700 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.038761 B = 0.005233 C = 0.004812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.205152 B = 5349.748991 C = 5817.237829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.090 3.910 3 N -0.407 5.407 4 C -0.294 4.294 5 H 0.113 0.887 6 C 0.033 3.967 7 N -0.845 5.845 8 Si 0.927 3.073 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.266 1.266 12 C 0.486 3.514 13 O -0.597 6.597 14 C -0.227 4.227 15 C 0.025 3.975 16 N -0.469 5.469 17 C 0.030 3.970 18 C -0.087 4.087 19 C -0.152 4.152 20 C -0.160 4.160 21 S 0.182 5.818 22 H 0.099 0.901 23 H 0.043 0.957 24 H 0.029 0.971 25 H 0.110 0.890 26 H 0.054 0.946 27 H 0.273 0.727 28 H 0.197 0.803 29 H 0.122 0.878 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.476 -5.315 11.108 12.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.033 4.033 3 N -0.122 5.122 4 C -0.423 4.423 5 H 0.131 0.869 6 C -0.172 4.172 7 N -0.482 5.482 8 Si 0.752 3.248 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.190 1.190 12 C 0.275 3.725 13 O -0.485 6.485 14 C -0.352 4.352 15 C -0.130 4.130 16 N -0.184 5.184 17 C -0.245 4.245 18 C -0.109 4.109 19 C -0.191 4.191 20 C -0.199 4.199 21 S 0.439 5.561 22 H 0.117 0.883 23 H 0.062 0.938 24 H 0.048 0.952 25 H 0.128 0.872 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.213 0.787 29 H 0.140 0.860 30 H 0.126 0.874 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.055 -4.593 11.402 12.463 hybrid contribution -0.418 -0.259 -1.467 1.547 sum 1.637 -4.852 9.936 11.178 Atomic orbital electron populations 1.22181 0.96101 0.99621 1.03226 1.22229 0.94994 0.83570 1.02535 1.43759 1.51658 1.11817 1.04924 1.19937 1.43206 0.97683 0.81489 0.86904 1.25384 0.95637 0.96397 0.99808 1.70137 1.28884 1.21540 1.27688 0.85909 0.79427 0.79766 0.79657 1.20021 1.20789 1.19040 1.16294 0.88034 0.86624 0.81544 1.90662 1.56848 1.15244 1.85742 1.26303 1.04406 1.03509 1.00978 1.23193 1.01945 0.94696 0.93145 1.65899 1.17764 1.30203 1.04487 1.26046 0.99718 0.98705 0.99985 1.20387 0.98592 1.04012 0.87879 1.22970 1.03205 0.90145 1.02800 1.23019 0.98201 1.01243 0.97427 1.83663 1.37113 1.29483 1.05801 0.88273 0.93815 0.95208 0.87223 0.92855 0.91634 0.78682 0.85964 0.87431 0.88444 0.88227 0.88409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 8.46 37.16 0.31 -2.85 16 2 C 0.09 2.00 4.88 -4.04 -0.02 1.98 16 3 N -0.41 -10.38 2.63 -116.33 -0.31 -10.69 16 4 C -0.29 -7.89 9.44 -15.01 -0.14 -8.03 16 5 H 0.11 3.20 7.29 -52.48 -0.38 2.82 16 6 C 0.03 0.82 5.09 -17.45 -0.09 0.73 16 7 N -0.84 -20.17 8.07 55.50 0.45 -19.72 16 8 Si 0.93 19.42 29.63 -169.99 -5.04 14.39 16 9 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 10 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 11 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 12 C 0.49 12.55 7.56 -12.90 -0.10 12.45 16 13 O -0.60 -17.26 16.67 5.16 0.09 -17.17 16 14 C -0.23 -4.94 6.06 -36.76 -0.22 -5.17 16 15 C 0.03 0.50 9.02 -18.46 -0.17 0.34 16 16 N -0.47 -8.55 9.96 -11.25 -0.11 -8.67 16 17 C 0.03 0.49 6.95 -13.31 -0.09 0.40 16 18 C -0.09 -1.06 6.28 -91.77 -0.58 -1.64 16 19 C -0.15 -1.62 10.11 -26.74 -0.27 -1.89 16 20 C -0.16 -1.67 10.23 -26.74 -0.27 -1.95 16 21 S 0.18 3.26 23.13 -107.50 -2.49 0.78 16 22 H 0.10 2.28 6.17 -51.93 -0.32 1.96 16 23 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.03 0.60 7.15 -51.93 -0.37 0.23 16 25 H 0.11 2.57 5.74 -51.93 -0.30 2.28 16 26 H 0.05 1.10 4.50 -51.93 -0.23 0.87 16 27 H 0.27 6.12 8.31 -40.82 -0.34 5.78 16 28 H 0.20 3.77 3.55 -52.49 -0.19 3.58 16 29 H 0.12 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.11 1.32 7.83 -51.93 -0.41 0.91 16 31 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 286.74 15.07 4.32 4.32 Total: -1.00 -29.14 286.74 -8.17 -37.31 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -3.45 Total: 5.09 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -1.64 Total: -5.63 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.03 Total: -39.08 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: 0.09 Total: -17.17 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.04 Total: 14.39 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -2.49 Total: 0.78 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.14 -8.17 -37.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609166478.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.924 kcal (2) G-P(sol) polarization free energy of solvation -29.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds