Wall clock time and date at job start Mon Mar 30 2020 01:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47641 * 2 1 4 4 C 1.36891 * 119.99605 * 274.77546 * 3 2 1 5 5 H 1.08006 * 119.99417 * 175.09513 * 4 3 2 6 6 C 1.39010 * 120.00339 * 355.08627 * 4 3 2 7 7 N 1.31391 * 120.00148 * 26.65332 * 6 4 3 8 8 Si 1.86801 * 119.99889 * 206.65405 * 6 4 3 9 9 H 1.48500 * 109.47268 * 89.99975 * 8 6 4 10 10 H 1.48501 * 109.46879 * 209.99938 * 8 6 4 11 11 H 1.48500 * 109.47322 * 329.99844 * 8 6 4 12 12 C 1.34776 * 119.99850 * 94.76677 * 3 2 1 13 13 O 1.21727 * 119.99490 * 185.37388 * 12 3 2 14 14 C 1.46562 * 120.00028 * 5.37661 * 12 3 2 15 15 C 1.36773 * 126.17920 * 330.66146 * 14 12 3 16 16 N 1.30943 * 113.92008 * 179.97438 * 15 14 12 17 17 C 1.29380 * 117.46683 * 0.02562 * 16 15 14 18 18 C 1.50701 * 124.69903 * 179.97438 * 17 16 15 19 19 C 1.52998 * 117.50138 * 8.64138 * 18 17 16 20 20 C 1.52993 * 60.00095 * 252.51337 * 19 18 17 21 21 S 1.70917 * 110.59551 * 359.97438 * 17 16 15 22 22 H 1.09007 * 109.46997 * 65.77026 * 1 2 3 23 23 H 1.08994 * 109.47522 * 185.77112 * 1 2 3 24 24 H 1.09001 * 109.47210 * 305.77516 * 1 2 3 25 25 H 1.09004 * 109.47297 * 239.99701 * 2 1 3 26 26 H 1.09002 * 109.47388 * 120.00009 * 2 1 3 27 27 H 0.96990 * 120.00589 * 180.02562 * 7 6 4 28 28 H 1.08001 * 123.04379 * 0.04781 * 15 14 12 29 29 H 1.09004 * 115.54708 * 154.35485 * 18 17 16 30 30 H 1.09004 * 117.49771 * 0.02562 * 19 18 17 31 31 H 1.09001 * 117.49600 * 145.02056 * 19 18 17 32 32 H 1.09006 * 117.50087 * 252.51071 * 20 19 18 33 33 H 1.08998 * 117.51863 * 107.48508 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1536 2.0593 -1.1814 5 1 2.4374 3.1014 -1.1765 6 6 1.9256 1.4067 -2.3875 7 7 1.1136 0.3748 -2.4329 8 14 2.7739 1.9969 -3.9436 9 1 4.0741 1.2956 -4.0951 10 1 1.9136 1.7037 -5.1180 11 1 3.0084 3.4606 -3.8550 12 6 2.3345 1.9842 1.1632 13 8 2.6465 3.1607 1.1736 14 6 2.3028 1.2232 2.4154 15 6 1.4939 0.1552 2.6908 16 7 1.6659 -0.3461 3.8882 17 6 2.5534 0.2115 4.6468 18 6 2.8830 -0.2306 6.0493 19 6 2.2634 -1.5402 6.5413 20 6 1.7548 -0.2026 7.0824 21 16 3.3000 1.5188 3.8378 22 1 -0.3633 0.4218 -0.9372 23 1 -0.3634 -1.0224 0.1033 24 1 -0.3634 0.6008 0.8338 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.9548 -0.0808 -3.2743 28 1 0.7790 -0.2398 1.9843 29 1 3.8879 0.0121 6.3947 30 1 1.6177 -2.0823 5.8503 31 1 2.8608 -2.1594 7.2104 32 1 2.0175 0.0583 8.1076 33 1 0.7742 0.1359 6.7477 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609166478.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:39 Heat of formation + Delta-G solvation = 48.119258 kcal Electronic energy + Delta-G solvation = -17892.331431 eV Core-core repulsion = 15046.519703 eV Total energy + Delta-G solvation = -2845.811728 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.33776 -40.03839 -37.69580 -37.18646 -34.09283 -31.85696 -30.96492 -27.86199 -26.55570 -24.24940 -23.54771 -23.20398 -22.27237 -20.22542 -19.02127 -18.87395 -17.74065 -16.81202 -16.57698 -16.23626 -15.86437 -15.78855 -15.21627 -15.05576 -14.62020 -14.02252 -13.77736 -13.28763 -13.04808 -12.93109 -12.73244 -12.41270 -12.31724 -12.20280 -12.15532 -11.95309 -11.62446 -11.51369 -10.89915 -10.86075 -10.49389 -10.33550 -9.94717 -9.63979 -8.48456 -5.90377 -0.65378 0.20294 0.74823 1.31728 1.42361 1.53091 1.56264 2.19279 2.21929 2.91261 2.93908 3.00896 3.15350 3.82355 3.90148 3.93725 4.12036 4.27258 4.33124 4.39261 4.72565 4.75915 4.83758 4.96296 5.01663 5.05789 5.21876 5.29271 5.35288 5.43085 5.82392 5.91422 6.38826 6.63809 7.02235 7.27872 7.88668 8.46101 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.038761 B = 0.005233 C = 0.004812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.205152 B = 5349.748991 C = 5817.237829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.095 3.905 3 N -0.416 5.416 4 C -0.349 4.349 5 H 0.080 0.920 6 C 0.014 3.986 7 N -0.847 5.847 8 Si 0.989 3.011 9 H -0.269 1.269 10 H -0.266 1.266 11 H -0.277 1.277 12 C 0.475 3.525 13 O -0.645 6.645 14 C -0.280 4.280 15 C 0.050 3.950 16 N -0.486 5.486 17 C 0.064 3.936 18 C -0.113 4.113 19 C -0.141 4.141 20 C -0.145 4.145 21 S 0.203 5.797 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.026 0.974 25 H 0.097 0.903 26 H 0.069 0.931 27 H 0.282 0.718 28 H 0.199 0.801 29 H 0.152 0.848 30 H 0.089 0.911 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.722 -7.344 13.100 15.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.028 4.028 3 N -0.130 5.130 4 C -0.477 4.477 5 H 0.098 0.902 6 C -0.192 4.192 7 N -0.483 5.483 8 Si 0.811 3.189 9 H -0.194 1.194 10 H -0.190 1.190 11 H -0.202 1.202 12 C 0.265 3.735 13 O -0.537 6.537 14 C -0.405 4.405 15 C -0.106 4.106 16 N -0.201 5.201 17 C -0.211 4.211 18 C -0.134 4.134 19 C -0.180 4.180 20 C -0.184 4.184 21 S 0.462 5.538 22 H 0.093 0.907 23 H 0.094 0.906 24 H 0.045 0.955 25 H 0.115 0.885 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.215 0.785 29 H 0.169 0.831 30 H 0.108 0.892 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.282 -6.657 13.374 15.113 hybrid contribution -0.520 0.265 -1.838 1.928 sum 1.762 -6.392 11.536 13.306 Atomic orbital electron populations 1.22037 0.94884 1.01298 1.01745 1.22265 0.95895 0.82086 1.02509 1.43905 1.51775 1.12718 1.04649 1.19732 1.47501 0.97251 0.83208 0.90233 1.26011 0.95162 0.96517 1.01520 1.70172 1.27909 1.21424 1.28810 0.85025 0.78670 0.78567 0.76599 1.19404 1.19020 1.20230 1.16819 0.87358 0.86475 0.82806 1.90590 1.58854 1.17405 1.86845 1.25955 1.07902 1.05381 1.01257 1.23262 1.00521 0.93188 0.93648 1.66047 1.19152 1.30749 1.04107 1.26992 0.96748 0.96323 1.01028 1.20813 1.00878 1.06094 0.85662 1.23081 1.02618 0.89900 1.02441 1.23140 0.96444 1.00643 0.98219 1.83533 1.36494 1.29863 1.03903 0.90683 0.90607 0.95459 0.88487 0.91335 0.90741 0.78485 0.83076 0.89201 0.85223 0.84875 0.89953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.86 8.46 71.98 0.61 -5.25 16 2 C 0.09 4.28 4.88 86.38 0.42 4.70 16 3 N -0.42 -22.25 2.63 -640.16 -1.68 -23.93 16 4 C -0.35 -19.75 9.44 84.09 0.79 -18.96 16 5 H 0.08 4.90 7.29 -2.91 -0.02 4.88 16 6 C 0.01 0.69 5.09 84.94 0.43 1.12 16 7 N -0.85 -40.67 8.07 21.67 0.17 -40.50 16 8 Si 0.99 40.47 29.63 68.60 2.03 42.51 16 9 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 10 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 11 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 12 C 0.48 25.77 7.56 86.41 0.65 26.42 16 13 O -0.65 -39.67 16.67 -4.44 -0.07 -39.75 16 14 C -0.28 -12.43 6.06 24.10 0.15 -12.28 16 15 C 0.05 1.96 9.02 84.48 0.76 2.72 16 16 N -0.49 -16.88 9.96 -189.51 -1.89 -18.77 16 17 C 0.06 1.93 6.95 88.47 0.62 2.55 16 18 C -0.11 -2.30 6.28 -11.54 -0.07 -2.38 16 19 C -0.14 -2.40 10.11 30.59 0.31 -2.09 16 20 C -0.15 -2.41 10.23 30.59 0.31 -2.10 16 21 S 0.20 7.13 23.13 -56.49 -1.31 5.82 16 22 H 0.07 3.49 6.17 -2.38 -0.01 3.48 16 23 H 0.08 2.58 8.14 -2.39 -0.02 2.57 16 24 H 0.03 1.11 7.15 -2.39 -0.02 1.09 16 25 H 0.10 4.61 5.74 -2.38 -0.01 4.60 16 26 H 0.07 2.84 4.50 -2.39 -0.01 2.83 16 27 H 0.28 12.44 8.31 -92.72 -0.77 11.67 16 28 H 0.20 7.50 3.55 -2.91 -0.01 7.49 16 29 H 0.15 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.09 1.91 7.83 -2.39 -0.02 1.89 16 31 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.13 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -66.86 286.74 3.39 -63.47 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 1.15 Total: 16.68 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 4.98 Total: -5.54 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -3.39 Total: -83.20 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -0.07 Total: -39.75 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.51 kcal Atomic # 16 Polarization: 7.13 SS G_CDS: -1.31 Total: 5.82 kcal Total: -66.86 3.39 -63.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609166478.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.593 kcal (2) G-P(sol) polarization free energy of solvation -66.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds