Wall clock time and date at job start Mon Mar 30 2020 00:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33638 * 126.03432 * 2 1 4 4 N 1.31785 * 114.49813 * 179.97438 * 3 2 1 5 5 C 1.29030 * 117.12588 * 359.97438 * 4 3 2 6 6 C 1.50696 * 124.91628 * 179.97438 * 5 4 3 7 7 H 1.08995 * 109.47230 * 195.02560 * 6 5 4 8 8 N 1.46498 * 109.47047 * 315.02448 * 6 5 4 9 9 C 1.34777 * 119.99828 * 204.72109 * 8 6 5 10 10 O 1.21693 * 120.00014 * 0.28042 * 9 8 6 11 11 C 1.46373 * 120.00147 * 180.27610 * 9 8 6 12 12 H 1.08002 * 120.00141 * 0.02562 * 11 9 8 13 13 C 1.40050 * 120.00087 * 179.97438 * 11 9 8 14 14 N 1.30674 * 120.00151 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99913 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46867 * 90.00451 * 15 13 11 17 17 H 1.48501 * 109.47216 * 210.00308 * 15 13 11 18 18 H 1.48499 * 109.47135 * 330.00649 * 15 13 11 19 19 C 1.52999 * 109.47087 * 75.02545 * 6 5 4 20 20 C 1.52997 * 117.49900 * 248.62185 * 19 6 5 21 21 C 1.52995 * 117.50111 * 179.97438 * 19 6 5 22 22 S 1.70984 * 110.16377 * 0.22986 * 5 4 3 23 23 H 1.09004 * 109.47574 * 89.98001 * 1 2 3 24 24 H 1.09006 * 109.47156 * 209.97800 * 1 2 3 25 25 H 1.08997 * 109.47233 * 329.97337 * 1 2 3 26 26 H 1.07994 * 122.74989 * 0.02562 * 3 2 1 27 27 H 0.97001 * 120.00384 * 25.00556 * 8 6 5 28 28 H 0.96991 * 119.99824 * 179.97438 * 14 13 11 29 29 H 1.09007 * 115.54818 * 34.32748 * 19 6 5 30 30 H 1.08998 * 117.50293 * 359.97438 * 20 19 6 31 31 H 1.09002 * 117.49968 * 145.02380 * 20 19 6 32 32 H 1.08995 * 117.49999 * 214.98157 * 21 19 6 33 33 H 1.09006 * 117.49891 * 359.97438 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2931 1.0807 0.0000 4 7 3.5844 0.8171 0.0005 5 6 3.9311 -0.4257 0.0015 6 6 5.3532 -0.9244 0.0017 7 1 5.3675 -1.9814 -0.2639 8 7 6.1372 -0.1648 -0.9753 9 6 7.2441 -0.7078 -1.5196 10 8 7.5895 -1.8310 -1.2033 11 6 8.0309 0.0534 -2.4912 12 1 7.7246 1.0504 -2.7717 13 6 9.1815 -0.5106 -3.0564 14 7 9.5524 -1.7167 -2.7167 15 14 10.1851 0.4606 -4.2969 16 1 11.2227 1.2494 -3.5853 17 1 10.8393 -0.4756 -5.2460 18 1 9.2912 1.3802 -5.0456 19 6 5.9580 -0.7403 1.3949 20 6 7.0672 0.3017 1.5515 21 6 7.4057 -1.1900 1.6017 22 16 2.5435 -1.4248 -0.0046 23 1 -0.3634 0.0004 -1.0277 24 1 -0.3634 -0.8902 0.5135 25 1 -0.3633 0.8897 0.5142 26 1 1.9023 2.0874 0.0004 27 1 5.8619 0.7305 -1.2274 28 1 10.3490 -2.1074 -3.1085 29 1 5.2671 -0.8696 2.2282 30 1 7.3665 0.8559 0.6619 31 1 7.1064 0.8583 2.4879 32 1 7.6673 -1.6143 2.5710 33 1 7.9272 -1.6174 0.7452 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613083354.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:14:24 Heat of formation + Delta-G solvation = 9.450323 kcal Electronic energy + Delta-G solvation = -17816.293644 eV Core-core repulsion = 14968.805106 eV Total energy + Delta-G solvation = -2847.488539 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.04478 -39.83969 -37.55699 -34.85837 -34.43075 -33.20740 -30.31966 -28.10227 -26.56049 -24.60881 -23.17171 -22.45380 -21.38388 -19.95348 -19.46496 -18.65093 -17.44622 -17.00940 -16.65094 -16.03837 -15.67984 -15.59427 -15.03713 -14.43083 -14.06671 -14.02106 -13.76958 -13.51325 -13.47148 -13.12751 -12.75946 -12.70721 -12.59525 -12.25490 -12.06005 -12.01437 -11.25377 -10.97724 -10.91435 -10.59068 -10.20246 -9.87340 -9.65379 -9.39836 -8.27375 -6.83337 -0.31177 0.31862 0.77177 1.40163 1.40820 1.55511 1.86046 2.25266 2.48326 2.86658 3.05446 3.27939 3.59473 3.90406 4.04693 4.06992 4.15192 4.28463 4.32252 4.50254 4.61627 4.75859 4.84485 4.92244 5.01789 5.07952 5.31776 5.32851 5.33266 5.56464 5.90101 6.16127 6.26551 6.80287 6.89114 7.52273 8.50487 8.68426 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.026029 B = 0.005388 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.473854 B = 5195.080014 C = 5643.669387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.214 4.214 3 C 0.012 3.988 4 N -0.478 5.478 5 C 0.025 3.975 6 C 0.263 3.737 7 H 0.070 0.930 8 N -0.739 5.739 9 C 0.550 3.450 10 O -0.610 6.610 11 C -0.573 4.573 12 H 0.077 0.923 13 C 0.036 3.964 14 N -0.814 5.814 15 Si 0.991 3.009 16 H -0.262 1.262 17 H -0.271 1.271 18 H -0.254 1.254 19 C -0.153 4.153 20 C -0.158 4.158 21 C -0.193 4.193 22 S 0.139 5.861 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.100 0.900 26 H 0.199 0.801 27 H 0.393 0.607 28 H 0.274 0.726 29 H 0.118 0.882 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.913 4.659 5.944 17.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.335 4.335 3 C -0.138 4.138 4 N -0.193 5.193 5 C -0.252 4.252 6 C 0.153 3.847 7 H 0.088 0.912 8 N -0.393 5.393 9 C 0.354 3.646 10 O -0.496 6.496 11 C -0.610 4.610 12 H 0.096 0.904 13 C -0.179 4.179 14 N -0.443 5.443 15 Si 0.811 3.189 16 H -0.187 1.187 17 H -0.196 1.196 18 H -0.178 1.178 19 C -0.174 4.174 20 C -0.195 4.195 21 C -0.230 4.230 22 S 0.394 5.606 23 H 0.106 0.894 24 H 0.099 0.901 25 H 0.119 0.881 26 H 0.215 0.785 27 H 0.226 0.774 28 H 0.084 0.916 29 H 0.136 0.864 30 H 0.096 0.904 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.300 3.006 6.140 16.758 hybrid contribution 0.360 1.382 -0.636 1.563 sum -14.940 4.387 5.504 16.515 Atomic orbital electron populations 1.20396 0.83836 1.04843 1.04096 1.26528 1.03167 0.93919 1.09883 1.22138 0.86134 1.01568 1.03955 1.66145 1.19279 1.18771 1.15077 1.26790 1.00493 0.92330 1.05627 1.18411 0.82502 0.95018 0.88746 0.91176 1.45876 1.28357 1.19207 1.45876 1.18383 0.79308 0.85925 0.80966 1.90501 1.71531 1.21853 1.65732 1.21343 1.10722 1.02923 1.26004 0.90438 1.26795 0.97829 0.95434 0.97876 1.70148 1.21588 1.15283 1.37291 0.85116 0.78092 0.78326 0.77382 1.18693 1.19615 1.17800 1.22570 0.91703 1.06310 0.96826 1.22811 1.02186 0.91902 1.02623 1.23302 0.97999 0.98254 1.03447 1.83863 0.97501 1.11657 1.67614 0.89374 0.90085 0.88143 0.78476 0.77350 0.91578 0.86386 0.90434 0.87407 0.87791 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 10.42 71.24 0.74 -0.15 16 2 C -0.21 -4.59 6.60 24.64 0.16 -4.43 16 3 C 0.01 0.30 11.25 83.66 0.94 1.25 16 4 N -0.48 -15.68 10.16 -191.45 -1.94 -17.63 16 5 C 0.02 0.85 6.19 88.52 0.55 1.40 16 6 C 0.26 10.81 2.93 44.24 0.13 10.94 16 7 H 0.07 3.21 7.58 -2.39 -0.02 3.20 16 8 N -0.74 -34.85 3.61 -450.41 -1.63 -36.48 16 9 C 0.55 31.50 6.56 86.36 0.57 32.06 16 10 O -0.61 -38.94 12.03 -4.33 -0.05 -38.99 16 11 C -0.57 -32.85 9.54 24.83 0.24 -32.61 16 12 H 0.08 4.12 7.85 -2.91 -0.02 4.09 16 13 C 0.04 2.03 5.50 85.30 0.47 2.50 16 14 N -0.81 -49.14 11.83 21.84 0.26 -48.88 16 15 Si 0.99 41.51 29.56 68.60 2.03 43.54 16 16 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 17 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 18 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 19 C -0.15 -5.79 5.69 -10.80 -0.06 -5.85 16 20 C -0.16 -6.11 9.73 30.61 0.30 -5.81 16 21 C -0.19 -8.05 9.82 30.61 0.30 -7.75 16 22 S 0.14 3.70 23.18 -56.49 -1.31 2.39 16 23 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 24 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 25 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.20 3.64 8.06 -2.91 -0.02 3.62 16 27 H 0.39 17.70 8.27 -92.71 -0.77 16.94 16 28 H 0.27 15.05 8.29 -92.71 -0.77 14.28 16 29 H 0.12 3.82 8.11 -2.38 -0.02 3.80 16 30 H 0.08 3.44 6.66 -2.39 -0.02 3.43 16 31 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 32 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 33 H 0.09 4.68 5.00 -2.38 -0.01 4.67 16 Total: -1.00 -72.27 296.44 2.06 -70.21 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: 0.38 Total: 34.28 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: 4.33 Total: -8.45 kcal Atomic # 7 Polarization: -99.67 SS G_CDS: -3.31 Total: -102.98 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -0.05 Total: -38.99 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -1.31 Total: 2.39 kcal Total: -72.27 2.06 -70.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613083354.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.663 kcal (2) G-P(sol) polarization free energy of solvation -72.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds