Wall clock time and date at job start Mon Mar 30 2020 00:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38913 * 120.74260 * 2 1 4 4 C 1.38025 * 119.33991 * 180.02562 * 3 2 1 5 5 C 1.50708 * 119.56913 * 179.97438 * 4 3 2 6 6 N 1.31964 * 120.85987 * 359.72569 * 4 3 2 7 7 C 1.32461 * 121.61703 * 0.55959 * 6 4 3 8 8 S 1.76192 * 119.71421 * 179.71545 * 7 6 4 9 9 C 1.81404 * 102.99967 * 359.72783 * 8 7 6 10 10 C 1.50701 * 109.47098 * 179.97438 * 9 8 7 11 11 O 1.21294 * 119.99849 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.37101 * 119.99707 * 180.02562 * 12 10 9 14 14 H 1.08002 * 119.99704 * 359.97438 * 13 12 10 15 15 C 1.38941 * 119.99927 * 180.02562 * 13 12 10 16 16 N 1.31417 * 120.00180 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00273 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47117 * 59.99412 * 17 15 13 19 19 H 1.48498 * 109.47600 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47088 * 299.99811 * 17 15 13 21 21 C 1.38258 * 120.74413 * 180.02562 * 2 1 3 22 22 H 1.09000 * 109.47447 * 269.98561 * 1 2 3 23 23 H 1.09002 * 109.47072 * 29.97837 * 1 2 3 24 24 H 1.08994 * 109.47132 * 149.97837 * 1 2 3 25 25 H 1.08002 * 120.33065 * 359.97438 * 3 2 1 26 26 H 1.08999 * 109.46724 * 90.00418 * 5 4 3 27 27 H 1.08996 * 109.47136 * 210.00174 * 5 4 3 28 28 H 1.08998 * 109.46841 * 329.99897 * 5 4 3 29 29 H 1.09002 * 109.47124 * 60.00075 * 9 8 7 30 30 H 1.09001 * 109.46975 * 300.00196 * 9 8 7 31 31 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 32 32 H 0.97000 * 119.99884 * 180.02562 * 16 15 13 33 33 H 1.08003 * 120.45501 * 359.96377 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2171 1.1939 0.0000 4 6 3.5969 1.1601 -0.0005 5 6 4.3725 2.4523 -0.0011 6 7 4.2459 0.0111 0.0044 7 6 3.6053 -1.1483 -0.0010 8 16 4.5222 -2.6528 -0.0017 9 6 6.2439 -2.0813 -0.0023 10 6 7.1683 -3.2716 -0.0022 11 8 6.7106 -4.3948 -0.0023 12 7 8.5035 -3.0878 -0.0031 13 6 9.3444 -4.1707 -0.0036 14 1 8.9368 -5.1708 -0.0028 15 6 10.7208 -3.9813 -0.0040 16 7 11.2167 -2.7643 -0.0044 17 14 11.8667 -5.4566 -0.0054 18 1 11.6169 -6.2762 -1.2182 19 1 13.2761 -4.9889 -0.0062 20 1 11.6179 -6.2777 1.2067 21 6 2.2138 -1.1883 -0.0005 22 1 -0.3634 -0.0003 1.0276 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3633 -0.8897 -0.5141 25 1 1.6947 2.1392 -0.0004 26 1 4.5599 2.7640 1.0264 27 1 5.3223 2.3058 -0.5153 28 1 3.7962 3.2217 -0.5149 29 1 6.4273 -1.4793 0.8878 30 1 6.4265 -1.4790 -0.8922 31 1 8.8694 -2.1895 -0.0034 32 1 12.1777 -2.6321 -0.0051 33 1 1.6935 -2.1347 -0.0004 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615683340.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:09:14 Heat of formation + Delta-G solvation = -18.568109 kcal Electronic energy + Delta-G solvation = -16738.138671 eV Core-core repulsion = 13889.435162 eV Total energy + Delta-G solvation = -2848.703509 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.15476 -38.14498 -34.24568 -34.03738 -32.69057 -31.37610 -29.24927 -28.03287 -27.51969 -24.68457 -23.45157 -21.19501 -19.52793 -18.03527 -17.13433 -16.56441 -15.99461 -15.86980 -14.90191 -14.51764 -14.38472 -14.35267 -13.83963 -13.50962 -13.16488 -12.92462 -12.76212 -12.58903 -12.45171 -12.26320 -11.91813 -11.68527 -11.43230 -11.06430 -10.46847 -10.27690 -10.09366 -9.71525 -9.57467 -9.49982 -9.34671 -8.58585 -8.05616 -7.25730 -6.47310 -3.88992 1.01642 1.20385 1.70075 2.61154 3.17361 3.24123 3.28849 3.62814 3.78457 4.14176 4.36230 4.49648 4.86703 4.91358 5.01374 5.14170 5.18585 5.23313 5.30139 5.47188 5.50058 5.58484 5.65068 5.73180 5.88795 5.92313 5.99752 6.18568 6.21700 6.61321 7.50108 7.85717 7.95803 8.49926 9.08849 9.43218 9.92737 10.69850 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.038650 B = 0.003773 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.278504 B = 7420.039535 C = 8118.569045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.025 4.025 3 C -0.193 4.193 4 C 0.145 3.855 5 C -0.104 4.104 6 N -0.497 5.497 7 C 0.118 3.882 8 S 0.008 5.992 9 C -0.118 4.118 10 C 0.450 3.550 11 O -0.583 6.583 12 N -0.549 5.549 13 C -0.303 4.303 14 H 0.105 0.895 15 C 0.025 3.975 16 N -0.897 5.897 17 Si 0.934 3.066 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.272 1.272 21 C -0.165 4.165 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.131 0.869 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.395 0.605 32 H 0.274 0.726 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.751 10.875 0.033 19.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.035 4.035 3 C -0.217 4.217 4 C 0.005 3.995 5 C -0.161 4.161 6 N -0.212 5.212 7 C -0.131 4.131 8 S 0.250 5.750 9 C -0.270 4.270 10 C 0.234 3.766 11 O -0.469 6.469 12 N -0.185 5.185 13 C -0.433 4.433 14 H 0.123 0.877 15 C -0.177 4.177 16 N -0.538 5.538 17 Si 0.760 3.240 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.198 1.198 21 C -0.192 4.192 22 H 0.095 0.905 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.149 0.851 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.229 0.771 32 H 0.084 0.916 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.177 8.966 0.036 18.496 hybrid contribution 0.474 1.329 0.017 1.411 sum -15.703 10.295 0.054 18.777 Atomic orbital electron populations 1.20810 0.90156 1.03262 1.02848 1.20173 0.96483 0.92592 0.94223 1.21669 0.94598 0.98432 1.07002 1.21271 0.91338 0.93808 0.93112 1.20719 1.00441 0.91841 1.03119 1.68054 1.39770 0.97225 1.16115 1.23799 0.94532 0.97714 0.97054 1.86153 0.99406 0.99961 1.89481 1.23543 0.94067 1.02248 1.07109 1.19044 0.83256 0.88627 0.85624 1.90555 1.75570 1.24324 1.56435 1.41741 1.03519 1.10034 1.63186 1.19707 0.86834 0.88584 1.48157 0.87693 1.25307 0.97530 0.97992 0.96888 1.69613 1.14040 1.20487 1.49657 0.85871 0.78350 0.80547 0.79199 1.19756 1.20882 1.19752 1.21457 0.92921 0.99039 1.05776 0.90510 0.91079 0.90930 0.85123 0.90366 0.90310 0.90798 0.87774 0.87778 0.77114 0.91619 0.84515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.06 36.01 0.36 -0.47 16 2 C -0.03 -0.28 5.91 -104.36 -0.62 -0.90 16 3 C -0.19 -2.11 9.44 -39.41 -0.37 -2.48 16 4 C 0.15 1.88 6.78 -82.61 -0.56 1.32 16 5 C -0.10 -1.00 10.17 36.01 0.37 -0.64 16 6 N -0.50 -7.89 9.34 -8.34 -0.08 -7.97 16 7 C 0.12 1.88 7.00 -16.92 -0.12 1.76 16 8 S 0.01 0.14 21.05 -107.50 -2.26 -2.12 16 9 C -0.12 -2.31 5.68 36.01 0.20 -2.10 16 10 C 0.45 11.04 7.80 -10.98 -0.09 10.96 16 11 O -0.58 -16.17 15.44 5.55 0.09 -16.08 16 12 N -0.55 -14.22 5.29 -10.96 -0.06 -14.27 16 13 C -0.30 -8.51 9.68 -14.94 -0.14 -8.66 16 14 H 0.11 3.06 7.16 -52.49 -0.38 2.69 16 15 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 16 N -0.90 -24.43 13.05 55.50 0.72 -23.70 16 17 Si 0.93 21.01 29.55 -169.99 -5.02 15.98 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 21 C -0.17 -2.19 9.54 -39.21 -0.37 -2.56 16 22 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 24 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 25 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 29 H 0.10 1.92 8.14 -51.92 -0.42 1.50 16 30 H 0.10 1.92 8.14 -51.92 -0.42 1.50 16 31 H 0.40 9.77 7.90 -40.82 -0.32 9.45 16 32 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.14 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 307.07 15.07 4.63 4.63 Total: -1.00 -31.92 307.07 -7.47 -39.39 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -4.05 Total: 7.33 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -1.43 Total: -3.18 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.59 Total: -45.94 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: 0.09 Total: -16.08 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -2.26 Total: -2.12 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.92 -7.47 -39.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615683340.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.820 kcal (2) G-P(sol) polarization free energy of solvation -31.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds