Wall clock time and date at job start Mon Mar 30 2020 00:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30719 * 122.10277 * 2 1 4 4 C 1.30645 * 115.88023 * 180.19867 * 3 2 1 5 5 C 1.47084 * 125.54490 * 179.81908 * 4 3 2 6 6 O 1.21678 * 119.99776 * 173.98405 * 5 4 3 7 7 N 1.34774 * 119.99749 * 353.70969 * 5 4 3 8 8 C 1.36770 * 119.99916 * 175.71653 * 7 5 4 9 9 H 1.07998 * 120.00018 * 224.27333 * 8 7 5 10 10 C 1.39092 * 119.99916 * 44.27659 * 8 7 5 11 11 N 1.31341 * 119.99935 * 23.14638 * 10 8 7 12 12 Si 1.86798 * 119.99875 * 203.15070 * 10 8 7 13 13 H 1.48501 * 109.47098 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47127 * 119.99887 * 12 10 8 15 15 H 1.48500 * 109.47059 * 239.99891 * 12 10 8 16 16 C 1.46498 * 120.00106 * 355.71924 * 7 5 4 17 17 C 1.52997 * 117.49909 * 183.09097 * 16 7 5 18 18 C 1.52996 * 117.50241 * 114.42908 * 16 7 5 19 19 S 1.76098 * 108.91240 * 359.55424 * 4 3 2 20 20 C 1.34239 * 122.10820 * 179.70488 * 2 1 3 21 21 C 1.50693 * 125.44247 * 0.04367 * 20 2 1 22 22 H 1.08997 * 109.46763 * 270.29344 * 1 2 3 23 23 H 1.09001 * 109.47021 * 30.29293 * 1 2 3 24 24 H 1.08997 * 109.46513 * 150.29623 * 1 2 3 25 25 H 0.96995 * 119.99746 * 184.95693 * 11 10 8 26 26 H 1.09008 * 115.54997 * 328.75072 * 16 7 5 27 27 H 1.08999 * 117.50197 * 359.97438 * 17 16 7 28 28 H 1.09002 * 117.50305 * 145.01950 * 17 16 7 29 29 H 1.09006 * 117.49753 * 214.98014 * 18 16 7 30 30 H 1.08998 * 117.50013 * 359.97358 * 18 16 7 31 31 H 1.09007 * 109.46822 * 180.02562 * 21 20 2 32 32 H 1.09002 * 109.47678 * 300.00021 * 21 20 2 33 33 H 1.08999 * 109.47484 * 60.00178 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2018 1.1073 0.0000 4 6 3.5005 0.9657 -0.0041 5 6 4.4802 2.0627 -0.0087 6 8 5.6675 1.8186 0.0982 7 7 4.0633 3.3380 -0.1369 8 6 4.9642 4.3636 -0.0534 9 1 4.7287 5.2433 0.5272 10 6 6.1837 4.2738 -0.7163 11 7 6.3108 3.4764 -1.7522 12 14 7.6406 5.2871 -0.1333 13 1 7.2395 6.0990 1.0437 14 1 8.7538 4.3806 0.2463 15 1 8.0864 6.1877 -1.2266 16 6 2.6451 3.6255 -0.3655 17 6 2.2455 5.0875 -0.5748 18 6 1.8903 4.3762 0.7333 19 16 3.8874 -0.7522 0.0046 20 6 2.2206 -1.1371 0.0059 21 6 1.6451 -2.5298 0.0121 22 1 -0.3633 0.0053 1.0276 23 1 -0.3633 0.8874 -0.5184 24 1 -0.3632 -0.8926 -0.5092 25 1 7.1782 3.3588 -2.1701 26 1 2.0964 2.8686 -0.9262 27 1 3.0377 5.8354 -0.5419 28 1 1.4337 5.2925 -1.2726 29 1 0.8449 4.1135 0.8955 30 1 2.4488 4.6558 1.6266 31 1 2.4563 -3.2580 0.0165 32 1 1.0309 -2.6652 0.9023 33 1 1.0321 -2.6736 -0.8776 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618390389.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:20:27 Heat of formation + Delta-G solvation = 51.722625 kcal Electronic energy + Delta-G solvation = -18256.496629 eV Core-core repulsion = 15410.841155 eV Total energy + Delta-G solvation = -2845.655474 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.65170 -38.21784 -35.98462 -33.07834 -32.76586 -30.96021 -29.56364 -26.53519 -24.63961 -24.01933 -21.60342 -21.14346 -19.90966 -18.77627 -17.43436 -16.46772 -15.98540 -14.98304 -14.72206 -14.47175 -13.85151 -13.66062 -13.26773 -13.07536 -12.83262 -12.76392 -12.48592 -12.07889 -11.99683 -11.77555 -11.27163 -10.91250 -10.85019 -10.68842 -10.66726 -10.23816 -9.92640 -9.77876 -9.09953 -8.88318 -8.79667 -8.25179 -8.05894 -7.19292 -6.25405 -3.97791 0.91142 1.79336 2.29814 3.00504 3.28430 3.37511 3.39209 4.19040 4.39899 4.56330 4.88526 4.94180 5.11694 5.20008 5.24365 5.50163 5.60217 5.61282 5.75700 5.81987 5.88409 5.93350 5.96018 6.11829 6.23212 6.37495 6.52026 6.65991 6.96437 7.08700 7.49231 8.08237 8.17578 8.85481 8.98521 9.45833 10.08801 10.78568 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.024818 B = 0.007296 C = 0.005890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.956882 B = 3837.056425 C = 4752.409446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.051 3.949 3 N -0.443 5.443 4 C 0.047 3.953 5 C 0.529 3.471 6 O -0.534 6.534 7 N -0.384 5.384 8 C -0.338 4.338 9 H 0.089 0.911 10 C 0.075 3.925 11 N -0.810 5.810 12 Si 0.910 3.090 13 H -0.268 1.268 14 H -0.278 1.278 15 H -0.284 1.284 16 C 0.084 3.916 17 C -0.184 4.184 18 C -0.195 4.195 19 S 0.183 5.817 20 C -0.284 4.284 21 C -0.063 4.063 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.269 0.731 26 H 0.129 0.871 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.233 -7.044 2.055 12.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.086 4.086 3 N -0.161 5.161 4 C -0.228 4.228 5 C 0.314 3.686 6 O -0.413 6.413 7 N -0.102 5.102 8 C -0.466 4.466 9 H 0.106 0.894 10 C -0.138 4.138 11 N -0.443 5.443 12 Si 0.736 3.264 13 H -0.193 1.193 14 H -0.203 1.203 15 H -0.210 1.210 16 C -0.021 4.021 17 C -0.221 4.221 18 C -0.234 4.234 19 S 0.440 5.560 20 C -0.407 4.407 21 C -0.122 4.122 22 H 0.088 0.912 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.146 0.854 27 H 0.122 0.878 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.738 -7.259 1.921 11.521 hybrid contribution -0.304 0.402 0.168 0.531 sum -9.043 -6.857 2.088 11.539 Atomic orbital electron populations 1.20295 0.88067 1.02665 1.02279 1.20155 0.98189 0.86735 1.03492 1.67072 1.04025 1.29203 1.15762 1.28502 0.93393 0.96659 1.04263 1.16490 0.85880 0.81434 0.84787 1.90691 1.15233 1.81876 1.53455 1.42539 1.04429 1.04059 1.59157 1.19097 0.97634 0.99251 1.30611 0.89387 1.25283 0.99599 0.96444 0.92452 1.69901 1.24681 1.34247 1.15424 0.86194 0.82101 0.79316 0.78813 1.19261 1.20308 1.21011 1.22143 0.84841 0.94365 1.00758 1.23173 1.02823 0.97094 0.99034 1.23149 1.00085 1.06442 0.93678 1.83851 1.02622 1.03702 1.65778 1.25172 0.98798 1.01073 1.15661 1.20076 1.00318 0.89469 1.02361 0.91224 0.90941 0.91412 0.92052 0.85404 0.87761 0.89839 0.89806 0.89546 0.91748 0.91043 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 10.02 36.01 0.36 -0.55 16 2 C 0.05 0.86 6.68 -84.47 -0.56 0.30 16 3 N -0.44 -8.93 7.15 -7.72 -0.06 -8.99 16 4 C 0.05 1.07 7.19 -14.47 -0.10 0.97 16 5 C 0.53 14.23 7.08 -12.67 -0.09 14.14 16 6 O -0.53 -15.95 14.65 5.21 0.08 -15.87 16 7 N -0.38 -10.06 2.82 -109.07 -0.31 -10.37 16 8 C -0.34 -9.23 7.91 -15.03 -0.12 -9.35 16 9 H 0.09 2.30 7.28 -52.49 -0.38 1.92 16 10 C 0.08 2.10 4.21 -17.44 -0.07 2.02 16 11 N -0.81 -23.76 11.97 55.50 0.66 -23.09 16 12 Si 0.91 21.46 29.62 -169.99 -5.03 16.42 16 13 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 C 0.08 1.86 5.13 -67.93 -0.35 1.51 16 17 C -0.18 -3.54 9.80 -26.70 -0.26 -3.80 16 18 C -0.19 -3.67 10.36 -26.70 -0.28 -3.94 16 19 S 0.18 3.40 23.00 -107.50 -2.47 0.92 16 20 C -0.28 -4.43 6.36 -35.72 -0.23 -4.66 16 21 C -0.06 -0.69 9.45 36.00 0.34 -0.35 16 22 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.07 0.67 7.33 -51.93 -0.38 0.29 16 25 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.13 2.80 5.88 -51.92 -0.31 2.50 16 27 H 0.10 2.14 6.72 -51.93 -0.35 1.79 16 28 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.69 7.93 -51.93 -0.41 0.27 16 LS Contribution 295.16 15.07 4.45 4.45 Total: -1.00 -31.94 295.16 -7.97 -39.91 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -3.92 Total: 0.32 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -1.36 Total: -3.70 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.30 Total: -42.45 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.08 Total: -15.87 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.42 kcal Atomic # 16 Polarization: 3.40 SS G_CDS: -2.47 Total: 0.92 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.94 -7.97 -39.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618390389.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.632 kcal (2) G-P(sol) polarization free energy of solvation -31.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds