Wall clock time and date at job start Mon Mar 30 2020 00:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30719 * 122.10277 * 2 1 4 4 C 1.30645 * 115.88023 * 180.19867 * 3 2 1 5 5 C 1.47084 * 125.54490 * 179.81908 * 4 3 2 6 6 O 1.21678 * 119.99776 * 173.98405 * 5 4 3 7 7 N 1.34774 * 119.99749 * 353.70969 * 5 4 3 8 8 C 1.36770 * 119.99916 * 175.71653 * 7 5 4 9 9 H 1.07998 * 120.00018 * 224.27333 * 8 7 5 10 10 C 1.39092 * 119.99916 * 44.27659 * 8 7 5 11 11 N 1.31341 * 119.99935 * 23.14638 * 10 8 7 12 12 Si 1.86798 * 119.99875 * 203.15070 * 10 8 7 13 13 H 1.48501 * 109.47098 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47127 * 119.99887 * 12 10 8 15 15 H 1.48500 * 109.47059 * 239.99891 * 12 10 8 16 16 C 1.46498 * 120.00106 * 355.71924 * 7 5 4 17 17 C 1.52997 * 117.49909 * 183.09097 * 16 7 5 18 18 C 1.52996 * 117.50241 * 114.42908 * 16 7 5 19 19 S 1.76098 * 108.91240 * 359.55424 * 4 3 2 20 20 C 1.34239 * 122.10820 * 179.70488 * 2 1 3 21 21 C 1.50693 * 125.44247 * 0.04367 * 20 2 1 22 22 H 1.08997 * 109.46763 * 270.29344 * 1 2 3 23 23 H 1.09001 * 109.47021 * 30.29293 * 1 2 3 24 24 H 1.08997 * 109.46513 * 150.29623 * 1 2 3 25 25 H 0.96995 * 119.99746 * 184.95693 * 11 10 8 26 26 H 1.09008 * 115.54997 * 328.75072 * 16 7 5 27 27 H 1.08999 * 117.50197 * 359.97438 * 17 16 7 28 28 H 1.09002 * 117.50305 * 145.01950 * 17 16 7 29 29 H 1.09006 * 117.49753 * 214.98014 * 18 16 7 30 30 H 1.08998 * 117.50013 * 359.97358 * 18 16 7 31 31 H 1.09007 * 109.46822 * 180.02562 * 21 20 2 32 32 H 1.09002 * 109.47678 * 300.00021 * 21 20 2 33 33 H 1.08999 * 109.47484 * 60.00178 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2018 1.1073 0.0000 4 6 3.5005 0.9657 -0.0041 5 6 4.4802 2.0627 -0.0087 6 8 5.6675 1.8186 0.0982 7 7 4.0633 3.3380 -0.1369 8 6 4.9642 4.3636 -0.0534 9 1 4.7287 5.2433 0.5272 10 6 6.1837 4.2738 -0.7163 11 7 6.3108 3.4764 -1.7522 12 14 7.6406 5.2871 -0.1333 13 1 7.2395 6.0990 1.0437 14 1 8.7538 4.3806 0.2463 15 1 8.0864 6.1877 -1.2266 16 6 2.6451 3.6255 -0.3655 17 6 2.2455 5.0875 -0.5748 18 6 1.8903 4.3762 0.7333 19 16 3.8874 -0.7522 0.0046 20 6 2.2206 -1.1371 0.0059 21 6 1.6451 -2.5298 0.0121 22 1 -0.3633 0.0053 1.0276 23 1 -0.3633 0.8874 -0.5184 24 1 -0.3632 -0.8926 -0.5092 25 1 7.1782 3.3588 -2.1701 26 1 2.0964 2.8686 -0.9262 27 1 3.0377 5.8354 -0.5419 28 1 1.4337 5.2925 -1.2726 29 1 0.8449 4.1135 0.8955 30 1 2.4488 4.6558 1.6266 31 1 2.4563 -3.2580 0.0165 32 1 1.0309 -2.6652 0.9023 33 1 1.0321 -2.6736 -0.8776 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618390389.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:20:26 Heat of formation + Delta-G solvation = 31.461944 kcal Electronic energy + Delta-G solvation = -18257.375198 eV Core-core repulsion = 15410.841155 eV Total energy + Delta-G solvation = -2846.534043 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.19370 -39.96035 -37.79789 -34.92959 -34.18678 -32.84735 -30.64219 -28.19593 -26.15949 -25.55594 -23.19437 -22.81817 -21.69470 -20.29971 -18.88105 -18.26541 -17.74896 -16.70844 -16.43247 -16.04797 -15.61990 -15.23341 -14.80331 -14.60795 -14.04323 -13.78129 -13.71770 -13.67202 -13.29605 -13.10874 -12.89158 -12.77875 -12.73506 -12.26534 -12.08856 -11.93928 -11.69458 -11.35403 -10.94098 -10.63869 -10.32105 -10.10134 -9.48051 -9.15253 -8.28946 -6.08478 -0.58377 0.29691 0.87360 1.36612 1.43635 1.53198 1.58493 2.28542 2.55882 2.91355 3.06676 3.30447 3.46356 4.01445 4.05978 4.14239 4.25811 4.36428 4.53109 4.70704 4.75247 4.86710 4.88401 4.89881 4.97510 5.06788 5.09496 5.33291 5.40323 5.46265 5.52305 6.09553 6.66857 6.85984 7.03090 7.48562 8.12193 8.75129 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.024818 B = 0.007296 C = 0.005890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.956882 B = 3837.056425 C = 4752.409446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.022 3.978 3 N -0.432 5.432 4 C -0.015 4.015 5 C 0.521 3.479 6 O -0.582 6.582 7 N -0.402 5.402 8 C -0.359 4.359 9 H 0.090 0.910 10 C 0.028 3.972 11 N -0.857 5.857 12 Si 0.971 3.029 13 H -0.255 1.255 14 H -0.290 1.290 15 H -0.270 1.270 16 C 0.054 3.946 17 C -0.173 4.173 18 C -0.169 4.169 19 S 0.190 5.810 20 C -0.244 4.244 21 C -0.068 4.068 22 H 0.085 0.915 23 H 0.070 0.930 24 H 0.098 0.902 25 H 0.265 0.735 26 H 0.128 0.872 27 H 0.086 0.914 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.224 -8.540 2.611 15.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.114 4.114 3 N -0.151 5.151 4 C -0.289 4.289 5 C 0.308 3.692 6 O -0.465 6.465 7 N -0.120 5.120 8 C -0.487 4.487 9 H 0.108 0.892 10 C -0.180 4.180 11 N -0.491 5.491 12 Si 0.795 3.205 13 H -0.179 1.179 14 H -0.217 1.217 15 H -0.196 1.196 16 C -0.050 4.050 17 C -0.211 4.211 18 C -0.208 4.208 19 S 0.446 5.554 20 C -0.367 4.367 21 C -0.127 4.127 22 H 0.103 0.897 23 H 0.089 0.911 24 H 0.117 0.883 25 H 0.074 0.926 26 H 0.145 0.855 27 H 0.105 0.895 28 H 0.133 0.867 29 H 0.134 0.866 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.767 -8.691 2.481 14.837 hybrid contribution 0.391 0.582 0.034 0.702 sum -11.377 -8.108 2.514 14.195 Atomic orbital electron populations 1.20438 0.84384 1.04203 1.03752 1.20893 1.00381 0.85985 1.04149 1.67015 1.03189 1.31300 1.13573 1.27662 0.93760 0.97461 1.10043 1.17043 0.86209 0.82630 0.83296 1.90617 1.17463 1.83103 1.55322 1.42722 1.05923 1.03860 1.59458 1.19300 0.98656 0.99887 1.30814 0.89242 1.26148 1.02088 0.97452 0.92326 1.69998 1.24741 1.37175 1.17174 0.85264 0.78368 0.77856 0.79044 1.17869 1.21688 1.19550 1.22260 0.83218 0.95930 1.03614 1.23225 1.02966 0.94835 1.00066 1.23137 1.00963 1.04151 0.92526 1.83775 1.05454 1.01208 1.64915 1.25930 0.96677 1.03365 1.10766 1.20394 1.01300 0.86107 1.04860 0.89652 0.91091 0.88305 0.92578 0.85514 0.89529 0.86700 0.86611 0.90811 0.90603 0.88244 0.88246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.38 10.02 71.24 0.71 -0.67 16 2 C 0.02 0.68 6.68 41.81 0.28 0.96 16 3 N -0.43 -17.07 7.15 -178.33 -1.27 -18.35 16 4 C -0.02 -0.71 7.19 87.19 0.63 -0.09 16 5 C 0.52 29.43 7.08 86.56 0.61 30.04 16 6 O -0.58 -36.91 14.65 -4.28 -0.06 -36.97 16 7 N -0.40 -21.94 2.82 -617.22 -1.74 -23.68 16 8 C -0.36 -20.44 7.91 84.13 0.67 -19.78 16 9 H 0.09 4.87 7.28 -2.91 -0.02 4.84 16 10 C 0.03 1.64 4.21 84.97 0.36 1.99 16 11 N -0.86 -53.00 11.97 21.69 0.26 -52.74 16 12 Si 0.97 45.89 29.62 68.60 2.03 47.92 16 13 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 14 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 15 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 16 C 0.05 2.42 5.13 44.99 0.23 2.65 16 17 C -0.17 -6.57 9.80 30.62 0.30 -6.27 16 18 C -0.17 -6.18 10.36 30.62 0.32 -5.86 16 19 S 0.19 6.97 23.00 -56.49 -1.30 5.67 16 20 C -0.24 -6.80 6.36 24.77 0.16 -6.65 16 21 C -0.07 -1.11 9.45 71.23 0.67 -0.44 16 22 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.10 1.37 7.33 -2.39 -0.02 1.36 16 25 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 26 H 0.13 5.59 5.88 -2.38 -0.01 5.57 16 27 H 0.09 3.60 6.72 -2.39 -0.02 3.59 16 28 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 29 H 0.12 3.46 8.14 -2.38 -0.02 3.44 16 30 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.07 1.14 8.14 -2.38 -0.02 1.13 16 32 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.10 1.25 7.93 -2.39 -0.02 1.23 16 Total: -1.00 -75.04 295.16 3.97 -71.07 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 1.13 Total: 11.18 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 4.93 Total: -4.10 kcal Atomic # 7 Polarization: -92.02 SS G_CDS: -2.76 Total: -94.78 kcal Atomic # 8 Polarization: -36.91 SS G_CDS: -0.06 Total: -36.97 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Atomic # 16 Polarization: 6.97 SS G_CDS: -1.30 Total: 5.67 kcal Total: -75.04 3.97 -71.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618390389.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.532 kcal (2) G-P(sol) polarization free energy of solvation -75.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds