Wall clock time and date at job start Mon Mar 30 2020 01:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99738 * 2 1 4 4 C 1.53004 * 109.46950 * 180.02562 * 3 2 1 5 5 O 1.42897 * 109.47233 * 64.99532 * 4 3 2 6 6 C 1.35702 * 116.99746 * 179.97438 * 5 4 3 7 7 C 1.39021 * 119.90696 * 0.30191 * 6 5 4 8 8 C 1.37670 * 120.09683 * 180.25650 * 7 6 5 9 9 C 1.39830 * 119.90120 * 359.43985 * 8 7 6 10 10 C 1.47419 * 120.09433 * 180.29781 * 9 8 7 11 11 O 1.21538 * 119.99870 * 0.02562 * 10 9 8 12 12 O 1.34771 * 119.99875 * 179.97438 * 10 9 8 13 13 C 1.34859 * 116.99643 * 180.02562 * 12 10 9 14 14 H 1.08002 * 120.00681 * 0.02562 * 13 12 10 15 15 C 1.38803 * 119.99774 * 180.02562 * 13 12 10 16 16 N 1.31428 * 120.00062 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99934 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46810 * 90.00406 * 17 15 13 19 19 H 1.48496 * 109.47010 * 210.00369 * 17 15 13 20 20 H 1.48496 * 109.47114 * 330.00210 * 17 15 13 21 21 C 1.39824 * 119.81020 * 0.28410 * 9 8 7 22 22 C 1.37675 * 119.90267 * 359.97438 * 21 9 8 23 23 H 1.09001 * 109.47559 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47293 * 300.00284 * 1 2 3 25 25 H 1.09004 * 109.47215 * 59.99966 * 1 2 3 26 26 H 1.08993 * 109.47721 * 59.99815 * 3 2 1 27 27 H 1.09011 * 109.47240 * 299.99377 * 3 2 1 28 28 H 1.09000 * 109.46800 * 304.99778 * 4 3 2 29 29 H 1.09005 * 109.47285 * 184.99924 * 4 3 2 30 30 H 1.07998 * 119.94891 * 359.97438 * 7 6 5 31 31 H 1.08002 * 120.05157 * 179.72505 * 8 7 6 32 32 H 0.96994 * 119.99981 * 179.97438 * 16 15 13 33 33 H 1.08001 * 120.04618 * 180.02562 * 21 9 8 34 34 H 1.08000 * 119.95256 * 180.02562 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9648 0.5796 -1.2219 6 6 5.3000 0.3990 -1.3838 7 6 6.1792 0.7920 -0.3811 8 6 7.5348 0.6155 -0.5435 9 6 8.0262 0.0293 -1.7140 10 6 9.4766 -0.1678 -1.8894 11 8 10.2471 0.1791 -1.0158 12 8 9.9481 -0.7335 -3.0182 13 6 11.2846 -0.8852 -3.1148 14 1 11.9249 -0.5594 -2.3084 15 6 11.8375 -1.4602 -4.2507 16 7 11.0584 -1.8563 -5.2323 17 14 13.6887 -1.6710 -4.3843 18 1 14.0778 -2.9921 -3.8288 19 1 14.0938 -1.5952 -5.8109 20 1 14.3661 -0.5934 -3.6195 21 6 7.1380 -0.3698 -2.7174 22 6 5.7842 -0.1846 -2.5490 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.6885 1.8464 0.8899 27 1 1.6886 1.8464 -0.8901 28 1 3.8514 0.5683 0.8410 29 1 3.9785 2.1766 0.0889 30 1 5.7984 1.2406 0.5245 31 1 8.2175 0.9252 0.2341 32 1 11.4448 -2.2578 -6.0263 33 1 7.5133 -0.8234 -3.6228 34 1 5.0973 -0.4929 -3.3233 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732388983.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:06 Heat of formation + Delta-G solvation = -135.975718 kcal Electronic energy + Delta-G solvation = -18996.279260 eV Core-core repulsion = 15667.438953 eV Total energy + Delta-G solvation = -3328.840307 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.11457 -38.96216 -38.09256 -36.83790 -35.02705 -32.17334 -31.39651 -30.66174 -29.45457 -26.67530 -25.50659 -23.85367 -23.02345 -21.61106 -20.11948 -18.29334 -17.71138 -17.15742 -17.03667 -16.00312 -15.87590 -15.33310 -15.17263 -14.77364 -14.43187 -14.34949 -14.07587 -13.39263 -13.20049 -12.82264 -12.72662 -12.38780 -11.97396 -11.85305 -11.56287 -11.51577 -11.25615 -10.88277 -10.60539 -10.43325 -10.36498 -10.04868 -9.81277 -9.05158 -8.78081 -8.58393 -7.97489 -6.43321 -4.06187 1.32176 1.64526 3.09825 3.14279 3.19611 3.25895 3.38962 3.51837 3.95344 4.37869 4.55193 4.62220 4.77052 4.89466 4.94116 5.03903 5.04202 5.09240 5.12933 5.17385 5.32682 5.35826 5.61023 5.71720 5.93802 6.14037 6.32161 6.47643 6.76582 6.77615 6.96991 7.05291 7.39413 7.49591 7.94823 8.72940 9.05628 9.86422 10.74634 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.053169 B = 0.003202 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.497822 B = 8741.187900 C = 9156.549961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.063 3.937 4 C 0.059 3.941 5 O -0.307 6.307 6 C 0.139 3.861 7 C -0.223 4.223 8 C -0.030 4.030 9 C -0.126 4.126 10 C 0.437 3.563 11 O -0.558 6.558 12 O -0.207 6.207 13 C -0.375 4.375 14 H 0.097 0.903 15 C 0.041 3.959 16 N -0.861 5.861 17 Si 0.945 3.055 18 H -0.273 1.273 19 H -0.278 1.278 20 H -0.266 1.266 21 C -0.032 4.032 22 C -0.162 4.162 23 H 0.087 0.913 24 H 0.040 0.960 25 H 0.042 0.958 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.128 0.872 31 H 0.135 0.865 32 H 0.271 0.729 33 H 0.149 0.851 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.626 5.671 8.095 21.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.016 4.016 5 O -0.220 6.220 6 C 0.094 3.906 7 C -0.242 4.242 8 C -0.049 4.049 9 C -0.127 4.127 10 C 0.286 3.714 11 O -0.457 6.457 12 O -0.113 6.113 13 C -0.451 4.451 14 H 0.115 0.885 15 C -0.164 4.164 16 N -0.497 5.497 17 Si 0.769 3.231 18 H -0.198 1.198 19 H -0.203 1.203 20 H -0.191 1.191 21 C -0.050 4.050 22 C -0.181 4.181 23 H 0.105 0.895 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.146 0.854 31 H 0.153 0.847 32 H 0.080 0.920 33 H 0.167 0.833 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.453 5.434 7.945 20.812 hybrid contribution 0.715 0.228 0.146 0.764 sum -17.738 5.662 8.091 20.302 Atomic orbital electron populations 1.22761 0.80901 1.03014 0.99890 1.87990 1.19753 1.27105 1.95389 1.22586 0.91700 0.85760 1.01338 1.22837 0.93500 0.98409 0.86889 1.86060 1.20440 1.76737 1.38765 1.19209 0.81903 0.95028 0.94503 1.21044 0.93717 1.09366 1.00080 1.20995 0.94320 0.93554 0.96022 1.19338 0.91606 1.05395 0.96400 1.20677 0.88214 0.80110 0.82429 1.90618 1.58819 1.52567 1.43665 1.83899 1.26448 1.65335 1.35667 1.21293 0.78653 1.40620 1.04507 0.88537 1.25371 1.00709 0.95903 0.94398 1.69977 1.35684 1.37594 1.06467 0.85647 0.80419 0.79190 0.77809 1.19830 1.20293 1.19051 1.21465 0.91326 0.93699 0.98521 1.20371 0.95544 1.05077 0.97072 0.89460 0.94136 0.93926 0.91172 0.92038 0.90947 0.90298 0.85390 0.84667 0.91956 0.83339 0.84890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.07 10.67 -40.09 -0.43 -4.49 16 3 C 0.06 0.52 6.32 37.16 0.23 0.75 16 4 C 0.06 0.57 5.12 37.16 0.19 0.76 16 5 O -0.31 -4.19 10.09 -23.67 -0.24 -4.43 16 6 C 0.14 2.12 6.70 -39.00 -0.26 1.85 16 7 C -0.22 -3.29 9.01 -39.50 -0.36 -3.64 16 8 C -0.03 -0.54 9.59 -39.19 -0.38 -0.92 16 9 C -0.13 -2.66 5.87 -104.97 -0.62 -3.27 16 10 C 0.44 11.47 7.83 34.47 0.27 11.74 16 11 O -0.56 -15.66 15.59 -19.30 -0.30 -15.96 16 12 O -0.21 -6.03 8.98 -21.76 -0.20 -6.23 16 13 C -0.37 -11.22 9.65 30.94 0.30 -10.92 16 14 H 0.10 2.91 6.86 -52.49 -0.36 2.55 16 15 C 0.04 1.15 5.50 -17.52 -0.10 1.05 16 16 N -0.86 -25.12 13.67 55.49 0.76 -24.36 16 17 Si 0.94 21.37 29.55 -169.99 -5.02 16.34 16 18 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 21 C -0.03 -0.60 9.61 -39.19 -0.38 -0.98 16 22 C -0.16 -2.62 9.97 -39.49 -0.39 -3.02 16 23 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 28 H 0.07 0.69 7.64 -51.93 -0.40 0.29 16 29 H 0.08 0.61 7.66 -51.93 -0.40 0.21 16 30 H 0.13 1.45 6.27 -52.49 -0.33 1.12 16 31 H 0.14 2.34 7.64 -52.49 -0.40 1.94 16 32 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.15 2.93 7.60 -52.49 -0.40 2.53 16 34 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 306.79 15.07 4.62 4.62 Total: -1.00 -34.66 306.79 -5.13 -39.79 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -3.96 Total: -0.03 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -0.37 Total: -5.26 kcal Atomic # 7 Polarization: -25.12 SS G_CDS: 0.76 Total: -24.36 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -1.16 Total: -31.12 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.66 -5.13 -39.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732388983.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.182 kcal (2) G-P(sol) polarization free energy of solvation -34.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds