Wall clock time and date at job start Mon Mar 30 2020 01:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46837 * 2 1 4 4 C 1.50694 * 109.47279 * 239.99985 * 2 1 3 5 5 O 1.20831 * 119.99915 * 240.00042 * 4 2 1 6 6 O 1.34220 * 120.00458 * 59.72412 * 4 2 1 7 7 C 1.45201 * 117.00682 * 180.27904 * 6 4 2 8 8 C 1.53001 * 109.47593 * 179.97438 * 7 6 4 9 9 C 1.50701 * 115.54920 * 65.10035 * 8 7 6 10 10 H 1.07995 * 120.00030 * 266.11302 * 9 8 7 11 11 C 1.37883 * 119.99525 * 86.11615 * 9 8 7 12 12 N 1.31515 * 120.00336 * 353.70429 * 11 9 8 13 13 Si 1.86803 * 119.99723 * 173.70452 * 11 9 8 14 14 H 1.48495 * 109.47237 * 59.99849 * 13 11 9 15 15 H 1.48497 * 109.47041 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46934 * 300.00076 * 13 11 9 17 17 C 1.52991 * 117.49533 * 279.43404 * 8 7 6 18 18 C 1.52995 * 117.49746 * 210.77424 * 8 7 6 19 19 C 1.52998 * 109.46990 * 119.99554 * 2 1 3 20 20 F 1.39895 * 109.47033 * 180.02562 * 19 2 1 21 21 F 1.39907 * 109.47160 * 300.00321 * 19 2 1 22 22 F 1.39901 * 109.47074 * 60.00207 * 19 2 1 23 23 H 1.09001 * 109.46837 * 180.02562 * 1 2 3 24 24 H 1.08991 * 109.47088 * 300.00282 * 1 2 3 25 25 H 1.09002 * 109.46895 * 60.00663 * 1 2 3 26 26 H 1.09004 * 109.46762 * 300.00088 * 7 6 4 27 27 H 1.09001 * 109.47092 * 59.99014 * 7 6 4 28 28 H 0.96993 * 120.00139 * 180.02562 * 12 11 9 29 29 H 1.09004 * 117.50588 * 359.97438 * 17 8 7 30 30 H 1.09001 * 117.50092 * 145.02483 * 17 8 7 31 31 H 1.08997 * 117.49855 * 214.98121 * 18 8 7 32 32 H 1.09007 * 117.50203 * 359.97438 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7271 -1.6928 -1.1195 6 8 1.7037 -0.2551 -2.4495 7 6 2.2180 -0.9927 -3.5896 8 6 1.7412 -0.3297 -4.8834 9 6 2.2676 1.0601 -5.1337 10 1 1.6916 1.9195 -4.8240 11 6 3.4845 1.2342 -5.7582 12 7 4.2423 0.1927 -6.0238 13 14 4.0567 2.9496 -6.2268 14 1 4.1566 3.7889 -5.0059 15 1 5.3878 2.8661 -6.8798 16 1 3.0809 3.5573 -7.1668 17 6 0.3199 -0.6424 -5.3551 18 6 1.5207 -1.2313 -6.0995 19 6 2.0400 -0.7211 1.2493 20 9 3.4390 -0.7206 1.2496 21 9 1.5736 -0.0616 2.3916 22 9 1.5737 -2.0402 1.2493 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 3.3077 -0.9924 -3.5608 27 1 1.8540 -2.0195 -3.5523 28 1 5.0985 0.3153 -6.4628 29 1 -0.2755 -1.3208 -4.7441 30 1 -0.2345 0.1569 -5.8470 31 1 1.7560 -0.8193 -7.0808 32 1 1.7157 -2.2969 -5.9781 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744279593.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:09 Heat of formation + Delta-G solvation = -223.049828 kcal Electronic energy + Delta-G solvation = -20918.117289 eV Core-core repulsion = 17043.644425 eV Total energy + Delta-G solvation = -3874.472864 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.092 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.11392 -47.63513 -47.50899 -40.07597 -36.98151 -35.43636 -34.18045 -32.02190 -27.15114 -26.52815 -25.40695 -23.62961 -21.26952 -20.52106 -19.36096 -18.75898 -18.43233 -17.51144 -16.86460 -16.51428 -15.80938 -15.29868 -14.71668 -14.45762 -14.42727 -13.98863 -13.95985 -13.72014 -13.66491 -13.41204 -13.16067 -12.87995 -12.41332 -12.03693 -11.94873 -11.72511 -11.46591 -11.02333 -10.93205 -10.61659 -10.37566 -10.21851 -10.01027 -9.65669 -8.91080 -8.53017 -8.29620 -6.13080 -4.19278 2.41234 2.42948 2.99900 3.26249 3.31820 3.33645 3.61386 3.97272 4.21919 4.33939 4.72137 4.79443 4.94229 5.16601 5.30409 5.43345 5.49941 5.87536 5.90327 6.14708 6.23889 6.41722 6.53148 6.65377 6.96523 7.04547 7.27395 7.38480 7.80047 8.09007 8.31620 8.82572 9.47245 10.96187 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.024986 B = 0.005499 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.361085 B = 5090.916359 C = 5494.230109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.136 4.136 3 H 0.149 0.851 4 C 0.462 3.538 5 O -0.503 6.503 6 O -0.326 6.326 7 C 0.116 3.884 8 C 0.036 3.964 9 C -0.494 4.494 10 H 0.063 0.937 11 C 0.069 3.931 12 N -0.881 5.881 13 Si 0.893 3.107 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.275 1.275 17 C -0.205 4.205 18 C -0.143 4.143 19 C 0.471 3.529 20 F -0.172 7.172 21 F -0.180 7.180 22 F -0.172 7.172 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.097 0.903 26 H 0.079 0.921 27 H 0.042 0.958 28 H 0.263 0.737 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.708 -0.243 11.437 13.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 H 0.167 0.833 4 C 0.303 3.697 5 O -0.392 6.392 6 O -0.241 6.241 7 C 0.043 3.957 8 C 0.035 3.965 9 C -0.531 4.531 10 H 0.082 0.918 11 C -0.134 4.134 12 N -0.517 5.517 13 Si 0.721 3.279 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.242 4.242 18 C -0.181 4.181 19 C 0.417 3.583 20 F -0.153 7.153 21 F -0.161 7.161 22 F -0.154 7.154 23 H 0.092 0.908 24 H 0.100 0.900 25 H 0.116 0.884 26 H 0.097 0.903 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.294 -0.622 11.346 12.989 hybrid contribution 0.713 0.649 -0.127 0.972 sum -5.581 0.027 11.219 12.531 Atomic orbital electron populations 1.21836 0.88618 1.04652 1.05500 1.22234 1.01844 1.03060 0.88534 0.83293 1.22483 0.78327 0.82896 0.85983 1.90730 1.35266 1.25576 1.87605 1.86485 1.68350 1.55520 1.13696 1.23050 0.99596 0.91560 0.81512 1.18774 0.93007 0.96119 0.88571 1.20344 1.03968 0.89772 1.39038 0.91840 1.25025 0.96272 0.96897 0.95219 1.69980 1.11219 1.29467 1.41010 0.86638 0.77846 0.84526 0.78916 1.20111 1.21231 1.20082 1.23023 0.92289 1.03114 1.05766 1.22543 1.00983 0.96642 0.97882 1.19815 0.76040 0.77832 0.84640 1.93232 1.29128 1.96325 1.96652 1.93180 1.88591 1.80859 1.53493 1.93204 1.88292 1.37195 1.96673 0.90824 0.89990 0.88374 0.90307 0.93947 0.92732 0.91492 0.89980 0.89321 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.88 37.16 0.33 -1.20 16 2 C -0.14 -1.78 2.81 -91.77 -0.26 -2.04 16 3 H 0.15 1.60 8.14 -51.93 -0.42 1.18 16 4 C 0.46 8.39 7.03 36.00 0.25 8.64 16 5 O -0.50 -10.52 14.59 -18.75 -0.27 -10.80 16 6 O -0.33 -6.66 10.05 -39.23 -0.39 -7.05 16 7 C 0.12 2.64 5.29 37.16 0.20 2.83 16 8 C 0.04 0.86 1.62 -155.67 -0.25 0.60 16 9 C -0.49 -13.02 8.78 -34.44 -0.30 -13.32 16 10 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 11 C 0.07 1.85 5.38 -17.82 -0.10 1.75 16 12 N -0.88 -24.35 12.88 55.43 0.71 -23.64 16 13 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 C -0.20 -4.26 9.96 -26.70 -0.27 -4.52 16 18 C -0.14 -3.22 9.37 -26.70 -0.25 -3.47 16 19 C 0.47 6.46 2.42 37.16 0.09 6.55 16 20 F -0.17 -2.71 16.40 2.25 0.04 -2.67 16 21 F -0.18 -2.13 16.80 2.25 0.04 -2.10 16 22 F -0.17 -2.58 15.88 2.25 0.04 -2.54 16 23 H 0.07 0.77 7.80 -51.93 -0.41 0.36 16 24 H 0.08 0.65 7.80 -51.93 -0.41 0.24 16 25 H 0.10 1.01 8.11 -51.93 -0.42 0.59 16 26 H 0.08 2.00 8.13 -51.93 -0.42 1.58 16 27 H 0.04 0.91 8.08 -51.93 -0.42 0.49 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 31 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 32 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 295.77 15.07 4.46 4.46 Total: -1.00 -29.13 295.77 -4.70 -33.82 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -3.73 Total: -0.86 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -0.56 Total: -4.17 kcal Atomic # 7 Polarization: -24.35 SS G_CDS: 0.71 Total: -23.64 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.67 Total: -17.85 kcal Atomic # 9 Polarization: -7.42 SS G_CDS: 0.11 Total: -7.31 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.13 -4.70 -33.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744279593.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.227 kcal (2) G-P(sol) polarization free energy of solvation -29.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds