Wall clock time and date at job start Mon Mar 30 2020 01:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46837 * 2 1 4 4 C 1.50694 * 109.47279 * 239.99985 * 2 1 3 5 5 O 1.20831 * 119.99915 * 240.00042 * 4 2 1 6 6 O 1.34220 * 120.00458 * 59.72412 * 4 2 1 7 7 C 1.45201 * 117.00682 * 180.27904 * 6 4 2 8 8 C 1.53001 * 109.47593 * 179.97438 * 7 6 4 9 9 C 1.50701 * 115.54920 * 65.10035 * 8 7 6 10 10 H 1.07995 * 120.00030 * 266.11302 * 9 8 7 11 11 C 1.37883 * 119.99525 * 86.11615 * 9 8 7 12 12 N 1.31515 * 120.00336 * 353.70429 * 11 9 8 13 13 Si 1.86803 * 119.99723 * 173.70452 * 11 9 8 14 14 H 1.48495 * 109.47237 * 59.99849 * 13 11 9 15 15 H 1.48497 * 109.47041 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46934 * 300.00076 * 13 11 9 17 17 C 1.52991 * 117.49533 * 279.43404 * 8 7 6 18 18 C 1.52995 * 117.49746 * 210.77424 * 8 7 6 19 19 C 1.52998 * 109.46990 * 119.99554 * 2 1 3 20 20 F 1.39895 * 109.47033 * 180.02562 * 19 2 1 21 21 F 1.39907 * 109.47160 * 300.00321 * 19 2 1 22 22 F 1.39901 * 109.47074 * 60.00207 * 19 2 1 23 23 H 1.09001 * 109.46837 * 180.02562 * 1 2 3 24 24 H 1.08991 * 109.47088 * 300.00282 * 1 2 3 25 25 H 1.09002 * 109.46895 * 60.00663 * 1 2 3 26 26 H 1.09004 * 109.46762 * 300.00088 * 7 6 4 27 27 H 1.09001 * 109.47092 * 59.99014 * 7 6 4 28 28 H 0.96993 * 120.00139 * 180.02562 * 12 11 9 29 29 H 1.09004 * 117.50588 * 359.97438 * 17 8 7 30 30 H 1.09001 * 117.50092 * 145.02483 * 17 8 7 31 31 H 1.08997 * 117.49855 * 214.98121 * 18 8 7 32 32 H 1.09007 * 117.50203 * 359.97438 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7271 -1.6928 -1.1195 6 8 1.7037 -0.2551 -2.4495 7 6 2.2180 -0.9927 -3.5896 8 6 1.7412 -0.3297 -4.8834 9 6 2.2676 1.0601 -5.1337 10 1 1.6916 1.9195 -4.8240 11 6 3.4845 1.2342 -5.7582 12 7 4.2423 0.1927 -6.0238 13 14 4.0567 2.9496 -6.2268 14 1 4.1566 3.7889 -5.0059 15 1 5.3878 2.8661 -6.8798 16 1 3.0809 3.5573 -7.1668 17 6 0.3199 -0.6424 -5.3551 18 6 1.5207 -1.2313 -6.0995 19 6 2.0400 -0.7211 1.2493 20 9 3.4390 -0.7206 1.2496 21 9 1.5736 -0.0616 2.3916 22 9 1.5737 -2.0402 1.2493 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 3.3077 -0.9924 -3.5608 27 1 1.8540 -2.0195 -3.5523 28 1 5.0985 0.3153 -6.4628 29 1 -0.2755 -1.3208 -4.7441 30 1 -0.2345 0.1569 -5.8470 31 1 1.7560 -0.8193 -7.0808 32 1 1.7157 -2.2969 -5.9781 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744279593.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:09 Heat of formation + Delta-G solvation = -238.281100 kcal Electronic energy + Delta-G solvation = -20918.777767 eV Core-core repulsion = 17043.644425 eV Total energy + Delta-G solvation = -3875.133342 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -51.21425 -48.69815 -48.66694 -41.60471 -38.70019 -37.09439 -35.27304 -34.02132 -28.87641 -27.49217 -27.36970 -24.91822 -22.98000 -21.86395 -21.21463 -19.92071 -19.55659 -18.83768 -18.29120 -18.14277 -17.45391 -16.75354 -16.60087 -15.82302 -15.56550 -15.43439 -15.08229 -14.88374 -14.84629 -14.77964 -14.52125 -14.05009 -13.95259 -13.60822 -13.34245 -13.05676 -12.91412 -12.79873 -12.48526 -12.39689 -12.08700 -11.75882 -11.74372 -11.42536 -10.79120 -10.49125 -10.09758 -8.14237 -6.25813 0.99060 1.18650 1.44057 1.44596 1.52142 1.75407 2.42399 2.52949 2.90888 3.02776 3.15517 3.40911 3.64852 3.73503 3.92754 4.11902 4.36546 4.45454 4.63696 4.65791 4.68140 4.80059 4.98031 5.13645 5.19124 5.39711 5.55380 5.61757 5.74737 6.34210 6.57276 6.80324 7.43602 8.94377 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.024986 B = 0.005499 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.361085 B = 5090.916359 C = 5494.230109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 H 0.177 0.823 4 C 0.458 3.542 5 O -0.535 6.535 6 O -0.330 6.330 7 C 0.128 3.872 8 C 0.003 3.997 9 C -0.506 4.506 10 H 0.060 0.940 11 C 0.023 3.977 12 N -0.911 5.911 13 Si 0.951 3.049 14 H -0.271 1.271 15 H -0.288 1.288 16 H -0.268 1.268 17 C -0.174 4.174 18 C -0.149 4.149 19 C 0.472 3.528 20 F -0.187 7.187 21 F -0.164 7.164 22 F -0.181 7.181 23 H 0.070 0.930 24 H 0.113 0.887 25 H 0.101 0.899 26 H 0.041 0.959 27 H 0.052 0.948 28 H 0.261 0.739 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.192 0.832 12.349 14.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 H 0.195 0.805 4 C 0.301 3.699 5 O -0.426 6.426 6 O -0.245 6.245 7 C 0.055 3.945 8 C 0.002 3.998 9 C -0.543 4.543 10 H 0.078 0.922 11 C -0.178 4.178 12 N -0.548 5.548 13 Si 0.777 3.223 14 H -0.196 1.196 15 H -0.214 1.214 16 H -0.193 1.193 17 C -0.211 4.211 18 C -0.186 4.186 19 C 0.417 3.583 20 F -0.169 7.169 21 F -0.146 7.146 22 F -0.163 7.163 23 H 0.089 0.911 24 H 0.131 0.869 25 H 0.119 0.881 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.802 0.465 12.271 14.549 hybrid contribution 1.149 0.294 -0.342 1.234 sum -6.653 0.758 11.929 13.680 Atomic orbital electron populations 1.21932 0.86013 1.05085 1.07215 1.22393 1.03760 1.03329 0.85214 0.80540 1.23447 0.77391 0.82624 0.86416 1.90717 1.36721 1.27244 1.87906 1.86478 1.68373 1.55469 1.14156 1.22623 0.97321 0.92223 0.82368 1.18875 0.95787 0.95657 0.89464 1.20641 1.04055 0.90951 1.38675 0.92204 1.25733 0.96505 1.00152 0.95370 1.70096 1.11463 1.31260 1.41995 0.85717 0.77298 0.80571 0.78740 1.19575 1.21363 1.19289 1.23033 0.90999 1.02849 1.04179 1.22483 1.02512 0.96991 0.96620 1.19900 0.75357 0.77616 0.85389 1.93206 1.30510 1.96371 1.96773 1.93211 1.88282 1.80430 1.52645 1.93188 1.88290 1.38035 1.96766 0.91086 0.86851 0.88054 0.94030 0.92966 0.93013 0.88812 0.89431 0.91244 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 8.88 71.98 0.64 -1.89 16 2 C -0.13 -3.03 2.81 -11.54 -0.03 -3.07 16 3 H 0.18 3.25 8.14 -2.39 -0.02 3.23 16 4 C 0.46 16.24 7.03 71.23 0.50 16.74 16 5 O -0.54 -22.49 14.59 21.95 0.32 -22.17 16 6 O -0.33 -13.24 10.05 -51.32 -0.52 -13.75 16 7 C 0.13 5.87 5.29 71.98 0.38 6.25 16 8 C 0.00 0.12 1.62 -52.93 -0.09 0.04 16 9 C -0.51 -26.61 8.78 25.60 0.22 -26.38 16 10 H 0.06 3.10 7.82 -2.91 -0.02 3.08 16 11 C 0.02 1.22 5.38 84.66 0.46 1.67 16 12 N -0.91 -51.25 12.88 21.45 0.28 -50.98 16 13 Si 0.95 42.14 29.54 68.60 2.03 44.16 16 14 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 15 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 16 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 17 C -0.17 -6.88 9.96 30.61 0.30 -6.58 16 18 C -0.15 -6.62 9.37 30.62 0.29 -6.34 16 19 C 0.47 12.08 2.42 71.98 0.17 12.26 16 20 F -0.19 -5.73 16.40 44.97 0.74 -4.99 16 21 F -0.16 -3.45 16.80 44.97 0.76 -2.70 16 22 F -0.18 -5.21 15.88 44.97 0.71 -4.49 16 23 H 0.07 1.29 7.80 -2.39 -0.02 1.27 16 24 H 0.11 1.30 7.80 -2.39 -0.02 1.28 16 25 H 0.10 1.75 8.11 -2.39 -0.02 1.73 16 26 H 0.04 2.18 8.13 -2.38 -0.02 2.16 16 27 H 0.05 2.24 8.08 -2.39 -0.02 2.22 16 28 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 29 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 30 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 31 H 0.07 3.33 8.14 -2.39 -0.02 3.31 16 32 H 0.08 3.20 8.14 -2.38 -0.02 3.18 16 Total: -1.00 -62.83 295.77 8.30 -54.53 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 1.13 Total: 7.68 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 2.85 Total: -7.29 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: 0.28 Total: -50.98 kcal Atomic # 8 Polarization: -35.73 SS G_CDS: -0.20 Total: -35.92 kcal Atomic # 9 Polarization: -14.39 SS G_CDS: 2.21 Total: -12.18 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -62.83 8.30 -54.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744279593.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.753 kcal (2) G-P(sol) polarization free energy of solvation -62.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds