Wall clock time and date at job start Mon Mar 30 2020 00:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38556 * 119.82497 * 2 1 4 4 C 1.37723 * 120.35234 * 179.97438 * 3 2 1 5 5 C 1.39863 * 119.99758 * 0.26328 * 4 3 2 6 6 C 1.47406 * 120.17096 * 179.74126 * 5 4 3 7 7 O 1.21507 * 119.99718 * 179.97438 * 6 5 4 8 8 O 1.34749 * 120.00162 * 359.97438 * 6 5 4 9 9 C 1.45199 * 116.99965 * 180.02562 * 8 6 5 10 10 C 1.52991 * 109.47179 * 179.97438 * 9 8 6 11 11 C 1.50696 * 109.47296 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99924 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00300 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99967 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00212 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46893 * 60.00145 * 15 13 11 17 17 H 1.48496 * 109.46985 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46892 * 300.00211 * 15 13 11 19 19 C 1.40039 * 119.64992 * 359.50676 * 5 4 3 20 20 O 1.35735 * 120.16857 * 180.22962 * 19 5 4 21 21 C 1.38430 * 119.82477 * 180.02562 * 2 1 3 22 22 O 1.36001 * 120.00401 * 0.02562 * 21 2 1 23 23 H 1.09008 * 109.46816 * 90.00409 * 1 2 3 24 24 H 1.09005 * 109.46818 * 209.99340 * 1 2 3 25 25 H 1.08987 * 109.47269 * 329.99821 * 1 2 3 26 26 H 1.08001 * 119.82402 * 0.02562 * 3 2 1 27 27 H 1.08002 * 119.99818 * 179.97438 * 4 3 2 28 28 H 1.09005 * 109.46658 * 299.99796 * 9 8 6 29 29 H 1.08997 * 109.47133 * 59.99130 * 9 8 6 30 30 H 1.09005 * 109.47408 * 299.99641 * 10 9 8 31 31 H 1.09005 * 109.47395 * 59.99971 * 10 9 8 32 32 H 0.96996 * 120.00500 * 180.02562 * 14 13 11 33 33 H 0.96697 * 114.00013 * 270.25276 * 20 19 5 34 34 H 0.96704 * 113.99279 * 90.00199 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1962 1.2020 0.0000 4 6 3.5734 1.2147 0.0005 5 6 4.2837 0.0099 -0.0045 6 6 5.7578 0.0191 -0.0097 7 8 6.3717 -1.0295 -0.0136 8 8 6.4243 1.1901 -0.0101 9 6 7.8747 1.1231 -0.0160 10 6 8.4508 2.5404 -0.0163 11 6 9.9561 2.4708 -0.0217 12 1 10.4524 1.5116 -0.0250 13 6 10.7000 3.6318 -0.0234 14 7 10.0958 4.7999 -0.0198 15 14 12.5661 3.5455 -0.0308 16 1 13.0234 2.8247 -1.2459 17 1 13.1251 4.9212 -0.0310 18 1 13.0329 2.8221 1.1791 19 6 3.5873 -1.2050 0.0004 20 8 4.2661 -2.3804 0.0003 21 6 2.1956 -1.2009 -0.0005 22 8 1.5120 -2.3767 -0.0016 23 1 -0.3633 -0.0001 -1.0278 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3633 0.8899 0.5138 26 1 1.6505 2.1340 0.0004 27 1 4.1047 2.1550 0.0001 28 1 8.2174 0.5914 0.8718 29 1 8.2104 0.5946 -0.9082 30 1 8.1081 3.0718 -0.9042 31 1 8.1151 3.0693 0.8758 32 1 10.6190 5.6166 -0.0214 33 1 4.4630 -2.7208 -0.8831 34 1 1.3148 -2.7161 -0.8854 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750618385.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:06:34 Heat of formation + Delta-G solvation = -158.172218 kcal Electronic energy + Delta-G solvation = -19362.819443 eV Core-core repulsion = 16033.016624 eV Total energy + Delta-G solvation = -3329.802820 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.78644 -39.44934 -37.27471 -36.80079 -35.85951 -33.37104 -32.60995 -30.28347 -29.46724 -27.85438 -25.05895 -23.00861 -22.75824 -21.19607 -20.61888 -18.83203 -18.06760 -17.14587 -16.68859 -16.37826 -15.93115 -15.68699 -15.21857 -14.85741 -14.53814 -14.29556 -13.66821 -13.29510 -13.15681 -12.84974 -12.53822 -12.34806 -12.07082 -11.81802 -11.47785 -11.21408 -11.05921 -10.77391 -10.73367 -10.65304 -10.08208 -9.64593 -9.60113 -9.31910 -8.94163 -8.82928 -8.44505 -6.10931 -4.15292 0.48033 0.91763 2.61849 3.05017 3.30131 3.34021 3.37717 3.46293 3.85114 3.94347 4.38437 4.52332 4.69708 4.87236 5.06336 5.25016 5.25647 5.26771 5.37856 5.51505 5.75315 5.93430 6.00010 6.09010 6.11086 6.13082 6.39287 6.63176 6.95107 7.17633 7.54769 7.59606 7.61425 7.86121 8.18174 8.25906 8.89940 9.49062 11.00562 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.041790 B = 0.003528 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.861268 B = 7934.745810 C = 8573.811673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.067 4.067 3 C -0.131 4.131 4 C -0.048 4.048 5 C -0.141 4.141 6 C 0.499 3.501 7 O -0.499 6.499 8 O -0.354 6.354 9 C 0.077 3.923 10 C 0.025 3.975 11 C -0.527 4.527 12 H 0.059 0.941 13 C 0.061 3.939 14 N -0.891 5.891 15 Si 0.900 3.100 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.150 3.850 20 O -0.467 6.467 21 C 0.059 3.941 22 O -0.481 6.481 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.138 0.862 27 H 0.150 0.850 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.264 0.736 33 H 0.392 0.608 34 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.310 -9.044 -3.270 22.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.068 4.068 3 C -0.149 4.149 4 C -0.066 4.066 5 C -0.143 4.143 6 C 0.343 3.657 7 O -0.389 6.389 8 O -0.270 6.270 9 C 0.004 3.996 10 C -0.012 4.012 11 C -0.566 4.566 12 H 0.077 0.923 13 C -0.141 4.141 14 N -0.529 5.529 15 Si 0.727 3.273 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.200 1.200 19 C 0.103 3.897 20 O -0.278 6.278 21 C 0.014 3.986 22 O -0.290 6.290 23 H 0.093 0.907 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.156 0.844 27 H 0.168 0.832 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.250 0.750 34 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -20.033 -9.038 -2.051 22.073 hybrid contribution 1.230 -0.199 -0.983 1.587 sum -18.803 -9.237 -3.034 21.168 Atomic orbital electron populations 1.20782 0.90018 1.03772 1.02720 1.20378 0.97126 0.92032 0.97282 1.20988 0.93819 0.97580 1.02477 1.21566 0.94007 0.97918 0.93115 1.19652 0.91025 0.93808 1.09804 1.20790 0.88094 0.82860 0.73979 1.90828 1.69710 1.33127 1.45202 1.86564 1.25276 1.32260 1.82920 1.23664 0.71848 1.03026 1.01033 1.19167 0.95038 0.88117 0.98874 1.20945 0.90354 0.92938 1.52317 0.92286 1.24978 0.99064 0.95230 0.94833 1.69957 1.35843 0.97364 1.49711 0.86524 0.84794 0.77134 0.78804 1.20063 1.21117 1.20048 1.18792 0.88881 0.85283 0.96741 1.84836 1.75624 1.34267 1.33024 1.18336 0.88390 0.85888 1.05998 1.84928 1.75336 1.35735 1.32955 0.90733 0.90503 0.90825 0.84388 0.83193 0.92212 0.92266 0.95337 0.95314 0.92645 0.74975 0.76043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.76 9.78 36.01 0.35 -0.41 16 2 C -0.07 -0.65 5.89 -104.43 -0.62 -1.26 16 3 C -0.13 -1.28 9.67 -39.65 -0.38 -1.66 16 4 C -0.05 -0.60 9.61 -39.16 -0.38 -0.97 16 5 C -0.14 -2.12 5.88 -104.88 -0.62 -2.74 16 6 C 0.50 9.37 7.89 34.46 0.27 9.64 16 7 O -0.50 -10.37 14.95 -26.60 -0.40 -10.77 16 8 O -0.35 -7.22 9.47 -40.63 -0.38 -7.60 16 9 C 0.08 1.73 5.41 37.15 0.20 1.93 16 10 C 0.03 0.66 5.35 -27.89 -0.15 0.51 16 11 C -0.53 -14.89 9.11 -34.44 -0.31 -15.21 16 12 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 15 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 C 0.15 2.04 6.73 -38.56 -0.26 1.78 16 20 O -0.47 -6.54 11.36 -47.51 -0.54 -7.08 16 21 C 0.06 0.66 6.68 -39.16 -0.26 0.40 16 22 O -0.48 -4.54 12.30 -34.27 -0.42 -4.96 16 23 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 24 H 0.08 0.53 7.51 -51.93 -0.39 0.14 16 25 H 0.07 0.41 8.08 -51.94 -0.42 -0.01 16 26 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 27 H 0.15 1.83 7.61 -52.49 -0.40 1.43 16 28 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.39 3.74 9.06 45.56 0.41 4.16 16 34 H 0.38 1.67 9.06 45.56 0.41 2.08 16 LS Contribution 305.82 15.07 4.61 4.61 Total: -1.00 -34.52 305.82 -6.13 -40.64 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -2.46 Total: 0.67 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -2.25 Total: -6.34 kcal Atomic # 7 Polarization: -26.33 SS G_CDS: 0.74 Total: -25.60 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -1.74 Total: -30.40 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.52 -6.13 -40.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750618385.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.528 kcal (2) G-P(sol) polarization free energy of solvation -34.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds