Wall clock time and date at job start Mon Mar 30 2020 01:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36005 * 116.99928 * 2 1 4 4 C 1.38124 * 119.99967 * 0.23300 * 3 2 1 5 5 C 1.39790 * 119.84437 * 180.25372 * 4 3 2 6 6 C 1.47467 * 120.07753 * 179.76768 * 5 4 3 7 7 O 1.21507 * 119.99683 * 359.72214 * 6 5 4 8 8 O 1.34752 * 120.00313 * 179.73024 * 6 5 4 9 9 C 1.45198 * 117.00139 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.46884 * 179.97438 * 9 8 6 11 11 C 1.50703 * 109.46912 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99776 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00001 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00114 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99955 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46725 * 60.00489 * 15 13 11 17 17 H 1.48505 * 109.46988 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47116 * 300.00464 * 15 13 11 19 19 C 1.39761 * 119.84601 * 359.49461 * 5 4 3 20 20 C 1.37770 * 119.99980 * 0.27593 * 19 5 4 21 21 C 1.38846 * 120.15465 * 359.97425 * 20 19 5 22 22 O 1.35796 * 119.92325 * 180.02562 * 21 20 19 23 23 H 1.08996 * 109.47443 * 60.00060 * 1 2 3 24 24 H 1.09000 * 109.46992 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46841 * 300.00127 * 1 2 3 26 26 H 1.07994 * 120.07720 * 0.04276 * 4 3 2 27 27 H 1.09002 * 109.47379 * 59.99489 * 9 8 6 28 28 H 1.09001 * 109.46782 * 299.99572 * 9 8 6 29 29 H 1.09001 * 109.47194 * 299.99482 * 10 9 8 30 30 H 1.08992 * 109.47399 * 59.99654 * 10 9 8 31 31 H 0.97000 * 120.00354 * 180.02562 * 14 13 11 32 32 H 1.08003 * 120.00038 * 180.29785 * 19 5 4 33 33 H 1.08002 * 119.92243 * 180.02562 * 20 19 5 34 34 H 0.96696 * 113.99447 * 90.00475 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2941 2.3702 0.0049 5 6 1.9321 3.6140 -0.0005 6 6 1.1339 4.8540 -0.0005 7 8 -0.0797 4.7953 -0.0010 8 8 1.7505 6.0522 -0.0002 9 6 0.9017 7.2303 0.0003 10 6 1.7741 8.4873 0.0012 11 6 0.8932 9.7100 0.0011 12 1 -0.1814 9.6014 0.0009 13 6 1.4590 10.9673 0.0024 14 7 2.7674 11.0996 0.0032 15 14 0.3671 12.4830 0.0016 16 1 -0.4918 12.4749 1.2131 17 1 1.2137 13.7030 0.0026 18 1 -0.4887 12.4759 -1.2119 19 6 3.3282 3.6797 -0.0001 20 6 4.0723 2.5203 -0.0002 21 6 3.4387 1.2848 -0.0001 22 8 4.1768 0.1450 0.0004 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.2156 2.3151 0.0094 27 1 0.2725 7.2244 0.8903 28 1 0.2724 7.2250 -0.8896 29 1 2.4031 8.4923 0.8914 30 1 2.4035 8.4933 -0.8885 31 1 3.1656 11.9841 0.0045 32 1 3.8237 4.6394 0.0006 33 1 5.1511 2.5725 0.0006 34 1 4.3901 -0.1849 0.8840 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757101768.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:06 Heat of formation + Delta-G solvation = -148.226876 kcal Electronic energy + Delta-G solvation = -19131.843797 eV Core-core repulsion = 15802.472239 eV Total energy + Delta-G solvation = -3329.371557 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.81733 -39.72629 -38.07193 -36.75302 -36.00109 -33.36924 -30.83594 -30.60535 -29.89497 -27.66142 -25.29114 -23.83177 -22.51851 -21.28941 -20.66021 -18.99594 -18.27480 -16.99648 -16.56221 -16.27588 -16.09992 -15.90847 -15.80505 -15.34314 -14.54875 -14.38066 -14.26608 -13.47021 -13.26395 -12.72805 -12.45945 -12.39914 -12.26383 -11.80804 -11.40314 -11.21758 -11.10568 -10.85827 -10.76586 -10.74152 -10.35711 -9.69121 -9.66777 -9.34192 -9.16804 -8.46446 -8.43962 -6.12256 -4.16857 0.45069 1.09971 2.56909 2.88522 3.07621 3.28995 3.33131 3.36646 3.52948 3.88067 4.37118 4.57141 4.72757 4.87282 4.91208 5.01243 5.03442 5.21804 5.24350 5.30256 5.47420 5.79796 6.00698 6.05499 6.05962 6.12574 6.31941 6.59771 6.87602 6.87821 7.41507 7.52390 7.59441 7.83755 8.10967 8.21960 8.88333 9.47629 10.99203 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.040592 B = 0.003340 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.618483 B = 8381.377661 C = 9042.687487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.307 6.307 3 C 0.088 3.912 4 C -0.135 4.135 5 C -0.088 4.088 6 C 0.501 3.499 7 O -0.514 6.514 8 O -0.349 6.349 9 C 0.075 3.925 10 C 0.025 3.975 11 C -0.528 4.528 12 H 0.059 0.941 13 C 0.061 3.939 14 N -0.890 5.890 15 Si 0.900 3.100 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.275 1.275 19 C -0.078 4.078 20 C -0.120 4.120 21 C 0.105 3.895 22 O -0.485 6.485 23 H 0.059 0.941 24 H 0.102 0.898 25 H 0.058 0.942 26 H 0.147 0.853 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.264 0.736 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.933 -21.459 1.671 21.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.221 6.221 3 C 0.042 3.958 4 C -0.154 4.154 5 C -0.090 4.090 6 C 0.346 3.654 7 O -0.405 6.405 8 O -0.265 6.265 9 C 0.003 3.997 10 C -0.012 4.012 11 C -0.566 4.566 12 H 0.077 0.923 13 C -0.141 4.141 14 N -0.528 5.528 15 Si 0.727 3.273 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.201 1.201 19 C -0.096 4.096 20 C -0.139 4.139 21 C 0.059 3.941 22 O -0.295 6.295 23 H 0.077 0.923 24 H 0.120 0.880 25 H 0.077 0.923 26 H 0.165 0.835 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.169 0.831 33 H 0.164 0.836 34 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 0.765 -21.423 1.061 21.463 hybrid contribution -0.935 1.004 0.496 1.460 sum -0.170 -20.418 1.557 20.478 Atomic orbital electron populations 1.23149 0.78114 1.04154 1.01893 1.86144 1.21492 1.25567 1.88857 1.19207 0.91647 0.84829 1.00120 1.21243 1.01128 0.90167 1.02886 1.19082 0.93550 0.90706 1.05615 1.20968 0.86330 0.84838 0.73287 1.90797 1.15091 1.88382 1.46212 1.86579 1.42660 1.14788 1.82504 1.23708 0.93716 0.81164 1.01106 1.19174 0.95355 0.87746 0.98950 1.20937 0.93025 0.90238 1.52425 0.92287 1.24976 0.95122 0.99179 0.94813 1.69957 1.09531 1.23706 1.49624 0.86525 0.80240 0.81695 0.78795 1.20055 1.21106 1.20056 1.21434 0.92234 0.99597 0.96361 1.21275 1.01135 0.90308 1.01159 1.18021 0.86081 0.86739 1.03252 1.84816 1.71920 1.39338 1.33461 0.92283 0.87958 0.92341 0.83532 0.92150 0.92139 0.95274 0.95263 0.92619 0.83122 0.83641 0.75352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.39 10.28 -34.42 -0.35 -3.74 16 3 C 0.09 1.05 6.69 -39.19 -0.26 0.78 16 4 C -0.14 -1.75 8.58 -39.04 -0.33 -2.08 16 5 C -0.09 -1.28 5.87 -104.99 -0.62 -1.90 16 6 C 0.50 9.07 7.89 34.49 0.27 9.35 16 7 O -0.51 -10.30 16.13 -19.27 -0.31 -10.61 16 8 O -0.35 -6.95 9.46 -40.63 -0.38 -7.33 16 9 C 0.08 1.67 5.41 37.16 0.20 1.87 16 10 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 11 C -0.53 -14.76 9.11 -34.44 -0.31 -15.07 16 12 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 15 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 C -0.08 -0.97 9.60 -39.18 -0.38 -1.35 16 20 C -0.12 -1.26 9.96 -39.53 -0.39 -1.66 16 21 C 0.10 1.16 6.72 -38.92 -0.26 0.90 16 22 O -0.49 -4.70 13.27 -33.76 -0.45 -5.15 16 23 H 0.06 0.45 7.67 -51.93 -0.40 0.05 16 24 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.42 7.65 -51.93 -0.40 0.02 16 26 H 0.15 1.80 5.87 -52.49 -0.31 1.49 16 27 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 32 H 0.15 1.84 7.60 -52.48 -0.40 1.44 16 33 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.39 1.89 9.06 45.56 0.41 2.30 16 LS Contribution 306.40 15.07 4.62 4.62 Total: -1.00 -32.96 306.40 -5.67 -38.64 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -3.17 Total: -1.37 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -1.34 Total: -5.87 kcal Atomic # 7 Polarization: -26.17 SS G_CDS: 0.74 Total: -25.43 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -1.50 Total: -26.83 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.96 -5.67 -38.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757101768.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.592 kcal (2) G-P(sol) polarization free energy of solvation -32.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds