Wall clock time and date at job start Mon Mar 30 2020 01:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81401 * 109.47323 * 2 1 4 4 C 1.81402 * 103.00064 * 179.97438 * 3 2 1 5 5 C 1.50693 * 109.46957 * 180.02562 * 4 3 2 6 6 C 1.38858 * 120.74947 * 90.00140 * 5 4 3 7 7 C 1.38142 * 119.32588 * 179.97438 * 6 5 4 8 8 N 1.31899 * 120.85487 * 359.97438 * 7 6 5 9 9 C 1.32426 * 121.63325 * 359.97438 * 8 7 6 10 10 N 1.39079 * 119.70553 * 179.97438 * 9 8 7 11 11 C 1.34780 * 120.00203 * 5.37776 * 10 9 8 12 12 O 1.21726 * 119.99798 * 354.91082 * 11 10 9 13 13 C 1.46197 * 120.00218 * 174.90653 * 11 10 9 14 14 H 1.08000 * 120.00340 * 359.72508 * 13 11 10 15 15 C 1.40122 * 120.00297 * 180.02562 * 13 11 10 16 16 N 1.30646 * 119.99404 * 359.97438 * 15 13 11 17 17 Si 1.86791 * 120.00167 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47468 * 89.99719 * 17 15 13 19 19 H 1.48508 * 109.47020 * 209.99780 * 17 15 13 20 20 H 1.48500 * 109.47508 * 329.99498 * 17 15 13 21 21 C 1.38342 * 120.75321 * 270.25370 * 5 4 3 22 22 H 1.09001 * 109.47095 * 300.00334 * 1 2 3 23 23 H 1.09002 * 109.46975 * 59.99740 * 1 2 3 24 24 H 1.08994 * 109.47486 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47441 * 239.99891 * 2 1 3 26 26 H 1.09004 * 109.47167 * 119.99752 * 2 1 3 27 27 H 1.09003 * 109.47235 * 59.99781 * 4 3 2 28 28 H 1.08999 * 109.47065 * 300.00127 * 4 3 2 29 29 H 1.07991 * 120.34174 * 0.02562 * 6 5 4 30 30 H 1.07993 * 119.57278 * 180.02562 * 7 6 5 31 31 H 0.97000 * 120.00064 * 185.38556 * 10 9 8 32 32 H 0.97003 * 119.99756 * 179.97438 * 16 15 13 33 33 H 1.08000 * 120.44805 * 0.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9372 1.5058 0.0008 5 6 4.5964 2.8608 0.0015 6 6 4.9064 3.4989 1.1952 7 6 5.5111 4.7405 1.1615 8 7 5.7960 5.3232 0.0131 9 6 5.5172 4.7470 -1.1462 10 7 5.8348 5.3980 -2.3335 11 6 6.5202 6.5581 -2.3035 12 8 6.7806 7.0837 -1.2369 13 6 6.9510 7.1852 -3.5519 14 1 6.7239 6.7165 -4.4981 15 6 7.6640 8.3910 -3.5207 16 7 7.9434 8.9551 -2.3760 17 14 8.2137 9.1925 -5.1159 18 1 7.1559 10.1180 -5.5951 19 1 9.4676 9.9529 -4.8813 20 1 8.4549 8.1440 -6.1394 21 6 4.9017 3.4996 -1.1870 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 4.2406 0.9541 -0.8890 28 1 4.2399 0.9544 0.8910 29 1 4.6780 3.0290 2.1403 30 1 5.7543 5.2401 2.0875 31 1 5.5630 5.0171 -3.1831 32 1 8.4373 9.7897 -2.3543 33 1 4.6704 3.0341 -2.1337 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773537646.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:31 Heat of formation + Delta-G solvation = -1.366425 kcal Electronic energy + Delta-G solvation = -16898.682999 eV Core-core repulsion = 14050.725411 eV Total energy + Delta-G solvation = -2847.957588 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.83365 -37.19968 -33.86909 -33.14566 -33.03222 -32.37980 -29.35268 -27.82014 -26.33542 -23.83575 -22.75277 -22.08347 -19.54069 -17.75574 -16.61932 -16.00139 -15.79928 -15.44494 -15.21718 -14.96592 -14.91911 -14.04671 -13.85638 -13.77823 -13.05177 -12.89318 -12.49088 -12.43874 -12.20315 -11.72439 -11.68075 -11.45639 -11.22203 -11.08360 -10.59072 -10.29926 -10.16001 -9.61034 -9.03147 -8.86256 -8.79561 -7.79259 -7.44584 -7.26253 -6.26286 -4.75609 1.10922 1.79623 2.12836 2.55305 3.10743 3.16967 3.20433 3.97490 4.30408 4.34921 4.63327 4.63448 4.68298 4.72515 4.80302 5.10119 5.30004 5.32141 5.41284 5.50278 5.57679 5.62145 5.77132 5.79065 5.90463 6.19136 6.32781 6.65445 7.05820 7.33421 7.55954 7.94799 8.14890 8.70807 8.90756 9.34461 10.49137 10.66047 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.039047 B = 0.003660 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.918526 B = 7648.120721 C = 8156.572703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.097 4.097 3 S -0.245 6.245 4 C -0.040 4.040 5 C -0.009 4.009 6 C -0.225 4.225 7 C 0.137 3.863 8 N -0.467 5.467 9 C 0.394 3.606 10 N -0.672 5.672 11 C 0.530 3.470 12 O -0.509 6.509 13 C -0.540 4.540 14 H 0.071 0.929 15 C 0.085 3.915 16 N -0.760 5.760 17 Si 0.913 3.087 18 H -0.271 1.271 19 H -0.278 1.278 20 H -0.264 1.264 21 C -0.222 4.222 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.124 0.876 30 H 0.150 0.850 31 H 0.399 0.601 32 H 0.272 0.728 33 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.686 -16.620 3.019 19.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.246 4.246 3 S -0.017 6.017 4 C -0.187 4.187 5 C -0.019 4.019 6 C -0.250 4.250 7 C -0.024 4.024 8 N -0.183 5.183 9 C 0.160 3.840 10 N -0.315 5.315 11 C 0.334 3.666 12 O -0.385 6.385 13 C -0.577 4.577 14 H 0.089 0.911 15 C -0.135 4.135 16 N -0.388 5.388 17 Si 0.737 3.263 18 H -0.196 1.196 19 H -0.203 1.203 20 H -0.188 1.188 21 C -0.249 4.249 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.098 0.902 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.142 0.858 30 H 0.167 0.833 31 H 0.233 0.767 32 H 0.082 0.918 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.535 -14.231 3.763 17.539 hybrid contribution 0.449 -1.847 -1.220 2.258 sum -9.087 -16.078 2.543 18.642 Atomic orbital electron populations 1.21496 0.92282 1.02349 1.03317 1.23337 1.00254 0.96275 1.04697 1.87385 1.04714 1.11542 1.98052 1.22229 0.93278 0.97697 1.05524 1.19068 0.95796 0.93570 0.93418 1.21663 1.07240 0.98515 0.97544 1.22697 0.92304 0.91231 0.96121 1.68034 1.19519 1.34047 0.96654 1.18859 0.89428 0.87819 0.87923 1.44635 1.56585 1.25714 1.04578 1.18567 0.78333 0.78201 0.91513 1.90744 1.55526 1.60669 1.31517 1.20842 1.37653 1.07545 0.91627 0.91108 1.25725 0.94157 0.96436 0.97216 1.69998 1.28202 1.14897 1.25709 0.86281 0.78493 0.79519 0.81970 1.19614 1.20335 1.18839 1.21265 1.08422 0.96727 0.98494 0.91669 0.91632 0.91262 0.90224 0.90263 0.89169 0.89116 0.85828 0.83255 0.76744 0.91762 0.85539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.92 37.16 0.37 -0.61 16 2 C -0.10 -0.79 6.66 37.16 0.25 -0.55 16 3 S -0.24 -2.92 21.72 -107.50 -2.33 -5.26 16 4 C -0.04 -0.46 6.11 36.00 0.22 -0.24 16 5 C -0.01 -0.14 5.17 -104.36 -0.54 -0.68 16 6 C -0.23 -3.49 9.81 -39.39 -0.39 -3.88 16 7 C 0.14 2.56 11.18 -17.56 -0.20 2.36 16 8 N -0.47 -11.10 7.88 -12.40 -0.10 -11.20 16 9 C 0.39 8.66 7.42 -154.91 -1.15 7.51 16 10 N -0.67 -15.61 5.37 -12.77 -0.07 -15.68 16 11 C 0.53 15.20 7.70 -13.06 -0.10 15.10 16 12 O -0.51 -16.60 13.27 5.17 0.07 -16.53 16 13 C -0.54 -15.02 9.54 -35.68 -0.34 -15.36 16 14 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 15 C 0.09 2.35 5.50 -17.35 -0.10 2.26 16 16 N -0.76 -22.57 11.83 55.55 0.66 -21.91 16 17 Si 0.91 19.80 29.56 -169.99 -5.02 14.78 16 18 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 21 C -0.22 -3.83 9.65 -39.20 -0.38 -4.21 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.57 8.14 -51.92 -0.42 0.14 16 27 H 0.09 0.91 8.10 -51.92 -0.42 0.49 16 28 H 0.09 0.88 8.10 -51.92 -0.42 0.46 16 29 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.15 2.40 8.06 -52.49 -0.42 1.98 16 31 H 0.40 7.66 8.68 -40.82 -0.35 7.31 16 32 H 0.27 7.29 8.29 -40.82 -0.34 6.96 16 33 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 305.51 15.07 4.60 4.60 Total: -1.00 -35.30 305.51 -8.67 -43.97 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -4.12 Total: 5.52 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -2.35 Total: 1.71 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 0.49 Total: -48.79 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: 0.07 Total: -16.53 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 16 Polarization: -2.92 SS G_CDS: -2.33 Total: -5.26 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -35.30 -8.67 -43.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773537646.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.603 kcal (2) G-P(sol) polarization free energy of solvation -35.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds