Wall clock time and date at job start Mon Mar 30 2020 01:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81401 * 109.47323 * 2 1 4 4 C 1.81402 * 103.00064 * 179.97438 * 3 2 1 5 5 C 1.50693 * 109.46957 * 180.02562 * 4 3 2 6 6 C 1.38858 * 120.74947 * 90.00140 * 5 4 3 7 7 C 1.38142 * 119.32588 * 179.97438 * 6 5 4 8 8 N 1.31899 * 120.85487 * 359.97438 * 7 6 5 9 9 C 1.32426 * 121.63325 * 359.97438 * 8 7 6 10 10 N 1.39079 * 119.70553 * 179.97438 * 9 8 7 11 11 C 1.34780 * 120.00203 * 5.37776 * 10 9 8 12 12 O 1.21726 * 119.99798 * 354.91082 * 11 10 9 13 13 C 1.46197 * 120.00218 * 174.90653 * 11 10 9 14 14 H 1.08000 * 120.00340 * 359.72508 * 13 11 10 15 15 C 1.40122 * 120.00297 * 180.02562 * 13 11 10 16 16 N 1.30646 * 119.99404 * 359.97438 * 15 13 11 17 17 Si 1.86791 * 120.00167 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47468 * 89.99719 * 17 15 13 19 19 H 1.48508 * 109.47020 * 209.99780 * 17 15 13 20 20 H 1.48500 * 109.47508 * 329.99498 * 17 15 13 21 21 C 1.38342 * 120.75321 * 270.25370 * 5 4 3 22 22 H 1.09001 * 109.47095 * 300.00334 * 1 2 3 23 23 H 1.09002 * 109.46975 * 59.99740 * 1 2 3 24 24 H 1.08994 * 109.47486 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47441 * 239.99891 * 2 1 3 26 26 H 1.09004 * 109.47167 * 119.99752 * 2 1 3 27 27 H 1.09003 * 109.47235 * 59.99781 * 4 3 2 28 28 H 1.08999 * 109.47065 * 300.00127 * 4 3 2 29 29 H 1.07991 * 120.34174 * 0.02562 * 6 5 4 30 30 H 1.07993 * 119.57278 * 180.02562 * 7 6 5 31 31 H 0.97000 * 120.00064 * 185.38556 * 10 9 8 32 32 H 0.97003 * 119.99756 * 179.97438 * 16 15 13 33 33 H 1.08000 * 120.44805 * 0.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9372 1.5058 0.0008 5 6 4.5964 2.8608 0.0015 6 6 4.9064 3.4989 1.1952 7 6 5.5111 4.7405 1.1615 8 7 5.7960 5.3232 0.0131 9 6 5.5172 4.7470 -1.1462 10 7 5.8348 5.3980 -2.3335 11 6 6.5202 6.5581 -2.3035 12 8 6.7806 7.0837 -1.2369 13 6 6.9510 7.1852 -3.5519 14 1 6.7239 6.7165 -4.4981 15 6 7.6640 8.3910 -3.5207 16 7 7.9434 8.9551 -2.3760 17 14 8.2137 9.1925 -5.1159 18 1 7.1559 10.1180 -5.5951 19 1 9.4676 9.9529 -4.8813 20 1 8.4549 8.1440 -6.1394 21 6 4.9017 3.4996 -1.1870 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 4.2406 0.9541 -0.8890 28 1 4.2399 0.9544 0.8910 29 1 4.6780 3.0290 2.1403 30 1 5.7543 5.2401 2.0875 31 1 5.5630 5.0171 -3.1831 32 1 8.4373 9.7897 -2.3543 33 1 4.6704 3.0341 -2.1337 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773537646.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:31 Heat of formation + Delta-G solvation = -24.899354 kcal Electronic energy + Delta-G solvation = -16899.703463 eV Core-core repulsion = 14050.725411 eV Total energy + Delta-G solvation = -2848.978053 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.36236 -39.10995 -35.58917 -34.63758 -34.47903 -33.61343 -30.96984 -28.97792 -28.36091 -24.59113 -24.22900 -23.58715 -21.27829 -19.61238 -18.03990 -17.67010 -17.11390 -16.80305 -16.72953 -15.92605 -15.76458 -15.60366 -15.35197 -15.28108 -14.46726 -14.12938 -13.95117 -13.89972 -13.22916 -13.09731 -12.81854 -12.76016 -12.65094 -12.54331 -12.24031 -12.02139 -11.35303 -10.96833 -10.89381 -10.46926 -10.33808 -9.46465 -8.94304 -8.66655 -8.31361 -6.92191 0.03076 0.34507 1.09548 1.39984 1.42625 1.57520 1.69444 2.20617 2.43782 2.67422 3.05777 3.50559 3.67542 3.74658 4.04042 4.08536 4.12365 4.23753 4.26127 4.50731 4.57247 4.58867 4.87880 4.90097 4.94588 4.95089 5.26022 5.27032 5.33934 5.65728 5.73046 6.08344 6.26670 6.79471 7.02186 7.61386 8.44977 8.61952 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.039047 B = 0.003660 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.918526 B = 7648.120721 C = 8156.572703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.081 4.081 3 S -0.303 6.303 4 C -0.028 4.028 5 C -0.005 4.005 6 C -0.200 4.200 7 C 0.111 3.889 8 N -0.530 5.530 9 C 0.354 3.646 10 N -0.673 5.673 11 C 0.517 3.483 12 O -0.564 6.564 13 C -0.567 4.567 14 H 0.094 0.906 15 C 0.026 3.974 16 N -0.816 5.816 17 Si 1.004 2.996 18 H -0.261 1.261 19 H -0.273 1.273 20 H -0.246 1.246 21 C -0.208 4.208 22 H 0.058 0.942 23 H 0.056 0.944 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.116 0.884 29 H 0.163 0.837 30 H 0.163 0.837 31 H 0.414 0.586 32 H 0.277 0.723 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.666 -19.428 2.099 22.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.229 4.229 3 S -0.076 6.076 4 C -0.175 4.175 5 C -0.015 4.015 6 C -0.224 4.224 7 C -0.047 4.047 8 N -0.247 5.247 9 C 0.122 3.878 10 N -0.318 5.318 11 C 0.322 3.678 12 O -0.444 6.444 13 C -0.603 4.603 14 H 0.112 0.888 15 C -0.189 4.189 16 N -0.446 5.446 17 Si 0.823 3.177 18 H -0.186 1.186 19 H -0.198 1.198 20 H -0.169 1.169 21 C -0.234 4.234 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.111 0.889 25 H 0.111 0.889 26 H 0.114 0.886 27 H 0.127 0.873 28 H 0.134 0.866 29 H 0.180 0.820 30 H 0.180 0.820 31 H 0.251 0.749 32 H 0.087 0.913 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.557 -17.116 2.858 20.312 hybrid contribution 0.603 -1.180 -0.781 1.538 sum -9.954 -18.296 2.076 20.931 Atomic orbital electron populations 1.21529 0.91752 1.03592 1.02612 1.23411 1.00458 0.92880 1.06116 1.87646 1.05608 1.16113 1.98259 1.22206 0.92246 0.95270 1.07799 1.19513 0.94555 0.95071 0.92331 1.22047 1.04053 0.96777 0.99515 1.23034 0.93467 0.92936 0.95277 1.67796 1.21567 1.36804 0.98510 1.19110 0.92000 0.89679 0.87055 1.44047 1.56780 1.24872 1.06125 1.18945 0.78327 0.79313 0.91256 1.90688 1.57824 1.62777 1.33144 1.21422 1.38106 1.08442 0.92363 0.88793 1.27051 0.93481 0.96748 1.01653 1.70182 1.29476 1.15754 1.29170 0.84922 0.78022 0.78488 0.76265 1.18572 1.19808 1.16928 1.21477 1.06478 0.94758 1.00702 0.92294 0.92494 0.88894 0.88923 0.88649 0.87290 0.86557 0.81977 0.82004 0.74919 0.91341 0.82906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.92 71.98 0.71 -0.84 16 2 C -0.08 -1.02 6.66 71.98 0.48 -0.54 16 3 S -0.30 -6.41 21.72 -56.49 -1.23 -7.64 16 4 C -0.03 -0.53 6.11 71.23 0.44 -0.10 16 5 C -0.01 -0.15 5.17 -19.69 -0.10 -0.25 16 6 C -0.20 -5.81 9.81 22.40 0.22 -5.60 16 7 C 0.11 4.23 11.18 84.66 0.95 5.17 16 8 N -0.53 -26.37 7.88 -193.13 -1.52 -27.89 16 9 C 0.35 15.98 7.42 133.03 0.99 16.97 16 10 N -0.67 -32.43 5.37 -312.53 -1.68 -34.10 16 11 C 0.52 31.12 7.70 86.31 0.66 31.79 16 12 O -0.56 -39.10 13.27 -4.43 -0.06 -39.16 16 13 C -0.57 -32.34 9.54 24.80 0.24 -32.11 16 14 H 0.09 4.70 7.85 -2.91 -0.02 4.67 16 15 C 0.03 1.47 5.50 85.33 0.47 1.94 16 16 N -0.82 -50.60 11.83 21.85 0.26 -50.34 16 17 Si 1.00 40.88 29.56 68.60 2.03 42.91 16 18 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 19 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 20 H -0.25 -9.20 7.11 99.48 0.71 -8.50 16 21 C -0.21 -6.94 9.65 22.52 0.22 -6.73 16 22 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 23 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.11 1.71 8.10 -2.39 -0.02 1.69 16 28 H 0.12 1.67 8.10 -2.39 -0.02 1.65 16 29 H 0.16 3.42 8.06 -2.92 -0.02 3.40 16 30 H 0.16 5.37 8.06 -2.91 -0.02 5.35 16 31 H 0.41 16.28 8.68 -92.71 -0.80 15.48 16 32 H 0.28 15.49 8.29 -92.71 -0.77 14.72 16 33 H 0.15 4.15 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -82.85 305.51 3.39 -79.46 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: 0.32 Total: 27.06 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 5.27 Total: 9.70 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -2.94 Total: -112.34 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -0.06 Total: -39.16 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Atomic # 16 Polarization: -6.41 SS G_CDS: -1.23 Total: -7.64 kcal Total: -82.85 3.39 -79.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773537646.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.562 kcal (2) G-P(sol) polarization free energy of solvation -82.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds