Wall clock time and date at job start Mon Mar 30 2020 01:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21335 * 119.99956 * 2 1 4 4 C 1.46447 * 120.00175 * 180.02562 * 2 1 3 5 5 C 1.37978 * 125.93454 * 180.29876 * 4 2 1 6 6 C 1.39944 * 106.73764 * 180.13371 * 5 4 2 7 7 C 1.36655 * 107.02345 * 359.63098 * 6 5 4 8 8 C 1.47272 * 125.66576 * 180.20548 * 7 6 5 9 9 O 1.21514 * 119.99891 * 0.02562 * 8 7 6 10 10 O 1.34807 * 120.00193 * 179.97438 * 8 7 6 11 11 C 1.45193 * 117.00001 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47100 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.47506 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47243 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00067 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99713 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00246 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99719 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47454 * 59.99665 * 18 16 14 20 20 H 1.48502 * 109.47068 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.47379 * 299.99779 * 18 16 14 22 22 O 1.34474 * 108.67020 * 0.23091 * 7 6 5 23 23 H 1.08995 * 109.46919 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47009 * 299.99995 * 1 2 3 25 25 H 1.09002 * 109.46591 * 60.00157 * 1 2 3 26 26 H 1.07999 * 126.62985 * 0.02562 * 5 4 2 27 27 H 1.08002 * 126.49040 * 179.90462 * 6 5 4 28 28 H 1.08997 * 109.48083 * 300.00729 * 11 10 8 29 29 H 1.09000 * 109.46969 * 60.00761 * 11 10 8 30 30 H 1.08995 * 109.47590 * 300.00845 * 12 11 10 31 31 H 1.09005 * 109.46957 * 60.00193 * 12 11 10 32 32 H 1.09003 * 109.47147 * 300.00640 * 13 12 11 33 33 H 1.09000 * 109.46849 * 60.00536 * 13 12 11 34 34 H 0.96995 * 120.00005 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1137 1.0508 0.0000 4 6 2.2393 -1.2682 -0.0006 5 6 3.6117 -1.4109 0.0052 6 6 3.8740 -2.7855 -0.0009 7 6 2.6655 -3.4234 -0.0017 8 6 2.4647 -4.8824 -0.0032 9 8 3.4244 -5.6278 -0.0034 10 8 1.2163 -5.3910 -0.0033 11 6 1.0939 -6.8378 -0.0054 12 6 -0.3864 -7.2244 -0.0058 13 6 -0.5155 -8.7489 -0.0074 14 6 -1.9735 -9.1297 -0.0085 15 1 -2.7323 -8.3612 -0.0085 16 6 -2.3388 -10.4592 -0.0094 17 7 -1.4149 -11.3951 -0.0098 18 14 -4.1462 -10.9311 -0.0115 19 1 -4.8009 -10.3783 -1.2244 20 1 -4.2714 -12.4109 -0.0128 21 1 -4.8034 -10.3794 1.2007 22 8 1.6901 -2.4978 -0.0015 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 4.3422 -0.6154 0.0113 27 1 4.8473 -3.2536 -0.0003 28 1 1.5749 -7.2420 -0.8960 29 1 1.5757 -7.2444 0.8838 30 1 -0.8678 -6.8202 0.8846 31 1 -0.8678 -6.8177 -0.8953 32 1 -0.0339 -9.1535 -0.8977 33 1 -0.0342 -9.1552 0.8823 34 1 -1.6719 -12.3303 -0.0101 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773695815.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:23 Heat of formation + Delta-G solvation = -119.717426 kcal Electronic energy + Delta-G solvation = -18757.716867 eV Core-core repulsion = 15429.581572 eV Total energy + Delta-G solvation = -3328.135295 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.16508 -40.24887 -39.55549 -36.75444 -34.08291 -33.61779 -31.93808 -31.57649 -29.84313 -27.29287 -25.15819 -23.28524 -22.36980 -21.31500 -20.46485 -20.34252 -18.54075 -17.35837 -17.17393 -16.80783 -16.21626 -16.11120 -15.43088 -15.09163 -14.50922 -14.08157 -14.05180 -13.88244 -13.52748 -13.31251 -12.69892 -12.62235 -12.30042 -12.25132 -12.00603 -11.08993 -11.00415 -10.72532 -10.64435 -10.58439 -10.55883 -10.52917 -9.80760 -9.58026 -9.26590 -9.22489 -8.41896 -6.06859 -4.10207 -0.05522 1.22429 1.85687 2.28374 2.61856 2.66397 3.30414 3.34969 3.37296 3.51895 4.30606 4.37941 4.45903 4.64145 4.95825 5.00257 5.00905 5.04845 5.29145 5.31971 5.45698 5.46146 5.57255 5.71059 5.89128 6.16926 6.23130 6.45890 6.67458 6.85354 6.90356 7.54289 7.56594 7.65693 7.90901 8.31502 8.95715 9.54300 11.04543 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.029358 B = 0.003107 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.509877 B = 9008.340139 C = 9930.798744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.442 3.558 3 O -0.437 6.437 4 C -0.076 4.076 5 C -0.133 4.133 6 C -0.133 4.133 7 C -0.008 4.008 8 C 0.543 3.457 9 O -0.479 6.479 10 O -0.343 6.343 11 C 0.067 3.933 12 C -0.110 4.110 13 C 0.025 3.975 14 C -0.524 4.524 15 H 0.057 0.943 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.896 3.104 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 O -0.126 6.126 23 H 0.091 0.909 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.171 0.829 27 H 0.174 0.826 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.555 20.903 0.030 22.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.319 3.681 3 O -0.311 6.311 4 C -0.129 4.129 5 C -0.152 4.152 6 C -0.152 4.152 7 C -0.061 4.061 8 C 0.386 3.614 9 O -0.368 6.368 10 O -0.259 6.259 11 C -0.005 4.005 12 C -0.147 4.147 13 C -0.012 4.012 14 C -0.562 4.562 15 H 0.076 0.924 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.723 3.277 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 O -0.020 6.020 23 H 0.110 0.890 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.189 0.811 27 H 0.191 0.809 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.815 20.918 0.029 22.330 hybrid contribution -0.677 -0.637 -0.001 0.929 sum 7.138 20.282 0.028 21.501 Atomic orbital electron populations 1.22233 0.91674 1.06088 1.05509 1.21328 0.91798 0.83984 0.70989 1.90648 1.72250 1.31458 1.36780 1.23474 0.93376 0.85459 1.10588 1.22464 0.94667 0.96995 1.01091 1.22002 0.98518 0.92948 1.01741 1.21429 0.87093 0.87549 1.10056 1.19319 0.82876 0.85175 0.74042 1.90943 1.42246 1.57959 1.45639 1.86652 1.28053 1.28691 1.82492 1.23705 1.01346 0.72790 1.02687 1.21801 0.89957 1.00731 1.02228 1.19052 0.97594 0.86827 0.97768 1.21125 0.91867 0.91888 1.51299 0.92432 1.25026 0.97663 0.96602 0.95122 1.69947 1.32783 1.00267 1.50341 0.86598 0.85086 0.77276 0.78693 1.20157 1.21249 1.20152 1.84170 1.35225 1.13860 1.68714 0.88996 0.87937 0.87941 0.81133 0.80880 0.90923 0.90919 0.91946 0.91943 0.96151 0.96145 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.19 10.32 36.01 0.37 -0.82 16 2 C 0.44 3.91 7.23 -31.00 -0.22 3.69 16 3 O -0.44 -4.83 17.62 5.51 0.10 -4.74 16 4 C -0.08 -0.76 7.09 -36.37 -0.26 -1.02 16 5 C -0.13 -1.21 10.66 -39.04 -0.42 -1.63 16 6 C -0.13 -1.33 10.58 -39.52 -0.42 -1.75 16 7 C -0.01 -0.10 7.18 -36.48 -0.26 -0.36 16 8 C 0.54 8.14 7.96 34.40 0.27 8.42 16 9 O -0.48 -7.98 16.65 -19.27 -0.32 -8.30 16 10 O -0.34 -5.59 10.23 -42.27 -0.43 -6.03 16 11 C 0.07 1.18 5.48 37.16 0.20 1.38 16 12 C -0.11 -2.19 5.53 -26.73 -0.15 -2.34 16 13 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 14 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 18 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 O -0.13 -1.47 10.11 3.98 0.04 -1.43 16 23 H 0.09 0.57 7.52 -51.93 -0.39 0.18 16 24 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 27 H 0.17 1.43 8.06 -52.49 -0.42 1.00 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 315.12 15.07 4.75 4.75 Total: -1.00 -31.44 315.12 -5.74 -37.18 By element: Atomic # 1 Polarization: -0.56 SS G_CDS: -4.16 Total: -4.72 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -1.43 Total: -7.23 kcal Atomic # 7 Polarization: -26.45 SS G_CDS: 0.74 Total: -25.72 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.62 Total: -20.49 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.44 -5.74 -37.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773695815.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.541 kcal (2) G-P(sol) polarization free energy of solvation -31.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds