Wall clock time and date at job start Mon Mar 30 2020 01:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00083 * 2 1 4 4 C 1.38757 * 120.05426 * 0.29963 * 3 2 1 5 5 C 1.38119 * 119.94413 * 180.21111 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.50981 * 5 4 3 7 7 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 8 8 C 1.50696 * 119.97662 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47405 * 89.99580 * 8 7 6 10 10 H 1.09001 * 109.47100 * 55.00080 * 9 8 7 11 11 O 1.42892 * 109.47079 * 295.00417 * 9 8 7 12 12 C 1.50693 * 109.47130 * 174.99831 * 9 8 7 13 13 O 1.21217 * 119.99716 * 115.00114 * 12 9 8 14 14 O 1.34318 * 120.00550 * 295.00104 * 12 9 8 15 15 C 1.34913 * 117.00069 * 179.97438 * 14 12 9 16 16 H 1.08002 * 120.00470 * 0.02562 * 15 14 12 17 17 C 1.38757 * 119.99685 * 180.02562 * 15 14 12 18 18 N 1.31437 * 120.00562 * 0.02562 * 17 15 14 19 19 Si 1.86809 * 119.99909 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46843 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46819 * 119.99862 * 19 17 15 22 22 H 1.48495 * 109.47234 * 240.00089 * 19 17 15 23 23 C 1.38171 * 120.05202 * 359.97438 * 7 6 5 24 24 H 1.09007 * 109.46894 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47190 * 299.99904 * 1 2 3 26 26 H 1.09000 * 109.47473 * 60.00460 * 1 2 3 27 27 H 1.07998 * 120.02597 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.97592 * 179.79533 * 5 4 3 29 29 H 1.08006 * 119.94478 * 180.25913 * 6 5 4 30 30 H 1.09005 * 109.47005 * 209.99445 * 8 7 6 31 31 H 1.08997 * 109.46936 * 329.99322 * 8 7 6 32 32 H 0.96702 * 113.99876 * 299.99403 * 11 9 8 33 33 H 0.96999 * 120.00656 * 180.02562 * 18 17 15 34 34 H 1.07997 * 120.02798 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0063 5 6 1.9208 3.6047 0.0019 6 6 3.3018 3.6757 0.0014 7 6 4.0560 2.5171 0.0004 8 6 5.5607 2.5982 0.0005 9 6 6.0700 2.6244 1.4430 10 1 5.6813 1.7600 1.9814 11 8 5.6268 3.8227 2.0829 12 6 7.5764 2.5815 1.4448 13 8 8.2091 3.5275 1.8621 14 8 8.2179 1.4952 0.9839 15 6 9.5665 1.5219 1.0130 16 1 10.0813 2.3909 1.3955 17 6 10.2920 0.4329 0.5516 18 7 9.6657 -0.6245 0.0856 19 14 12.1593 0.4701 0.5912 20 1 12.6166 1.7647 1.1571 21 1 12.6587 -0.6434 1.4372 22 1 12.6869 0.3186 -0.7886 23 6 3.4311 1.2848 0.0003 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 0.2128 2.3203 0.0108 28 1 1.3339 4.5114 0.0034 29 1 3.7922 4.6381 0.0022 30 1 5.9714 1.7294 -0.5140 31 1 5.8757 3.5068 -0.5126 32 1 5.9359 4.6337 1.6565 33 1 10.1729 -1.3859 -0.2367 34 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785704757.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:00 Heat of formation + Delta-G solvation = -147.545176 kcal Electronic energy + Delta-G solvation = -19580.976199 eV Core-core repulsion = 16251.634202 eV Total energy + Delta-G solvation = -3329.341997 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.18304 -39.28748 -37.78636 -36.48722 -34.82323 -32.62289 -32.12288 -30.47989 -28.84774 -27.33670 -25.61594 -24.05425 -22.44218 -20.95814 -20.31398 -17.92456 -17.78796 -17.08999 -16.32368 -15.94731 -15.88202 -15.74630 -15.06952 -14.63233 -14.38265 -14.21256 -13.80462 -13.53894 -13.15307 -12.80883 -12.47031 -12.07115 -11.80432 -11.61160 -11.47093 -11.32263 -11.19245 -11.02486 -10.76402 -10.52424 -10.42210 -10.31700 -9.83919 -9.03008 -8.61541 -8.60871 -8.14181 -6.44470 -4.12388 1.35760 1.52400 3.06110 3.17980 3.22011 3.25465 3.41902 3.79998 3.92049 4.45467 4.62894 4.76647 4.89668 4.98382 4.99313 5.07637 5.13316 5.30376 5.33701 5.37415 5.41960 5.56459 5.67830 5.99632 6.15134 6.20940 6.34047 6.46609 6.63374 6.72082 6.84207 7.36126 7.40505 7.84989 7.91484 8.64881 9.04213 9.78541 10.72904 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.026773 B = 0.004298 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.569995 B = 6513.845222 C = 7325.391274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.124 3.876 4 C -0.216 4.216 5 C -0.083 4.083 6 C -0.140 4.140 7 C -0.029 4.029 8 C -0.110 4.110 9 C 0.137 3.863 10 H 0.124 0.876 11 O -0.536 6.536 12 C 0.365 3.635 13 O -0.551 6.551 14 O -0.209 6.209 15 C -0.384 4.384 16 H 0.096 0.904 17 C 0.044 3.956 18 N -0.862 5.862 19 Si 0.942 3.058 20 H -0.265 1.265 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.145 4.145 24 H 0.097 0.903 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.378 0.622 33 H 0.270 0.730 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.883 3.639 -2.676 17.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C 0.079 3.921 4 C -0.234 4.234 5 C -0.101 4.101 6 C -0.159 4.159 7 C -0.029 4.029 8 C -0.147 4.147 9 C 0.076 3.924 10 H 0.142 0.858 11 O -0.342 6.342 12 C 0.211 3.789 13 O -0.448 6.448 14 O -0.116 6.116 15 C -0.460 4.460 16 H 0.114 0.886 17 C -0.161 4.161 18 N -0.499 5.499 19 Si 0.767 3.233 20 H -0.189 1.189 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.164 4.164 24 H 0.116 0.884 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.141 0.859 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.121 0.879 31 H 0.101 0.899 32 H 0.226 0.774 33 H 0.080 0.920 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.864 3.031 -2.267 17.283 hybrid contribution 0.880 0.453 -0.345 1.048 sum -15.984 3.484 -2.612 16.566 Atomic orbital electron populations 1.23014 0.78773 1.03710 1.01132 1.86089 1.21056 1.27103 1.88868 1.18973 0.92259 0.84014 0.96838 1.21152 0.99647 0.92526 1.10120 1.20860 0.94575 0.96765 0.97936 1.20938 0.93529 0.98071 1.03322 1.19528 0.95092 0.92220 0.96045 1.21305 0.91083 1.05431 0.96930 1.21148 0.87979 0.89809 0.93477 0.85804 1.86570 1.74638 1.15284 1.57662 1.24065 0.91569 0.83177 0.80082 1.90569 1.68393 1.37943 1.47908 1.83872 1.22602 1.37217 1.67916 1.21286 0.77401 1.03946 1.43345 0.88645 1.25339 1.00652 0.94333 0.95766 1.69989 1.36304 1.05077 1.38487 0.85624 0.80589 0.78847 0.78276 1.18944 1.20110 1.20118 1.20417 0.91322 0.98644 1.06016 0.88422 0.92797 0.92861 0.85912 0.86041 0.85932 0.87867 0.89944 0.77425 0.92031 0.84703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.11 10.50 -19.41 -0.20 -4.31 16 3 C 0.12 1.70 6.69 -39.22 -0.26 1.43 16 4 C -0.22 -2.53 9.04 -39.43 -0.36 -2.89 16 5 C -0.08 -0.96 10.04 -39.61 -0.40 -1.36 16 6 C -0.14 -1.80 9.39 -39.56 -0.37 -2.17 16 7 C -0.03 -0.42 4.97 -104.65 -0.52 -0.94 16 8 C -0.11 -1.75 5.01 -27.88 -0.14 -1.89 16 9 C 0.14 2.54 3.48 -27.88 -0.10 2.44 16 10 H 0.12 2.26 8.14 -51.93 -0.42 1.83 16 11 O -0.54 -9.30 12.49 -55.10 -0.69 -9.99 16 12 C 0.37 8.91 7.22 36.00 0.26 9.17 16 13 O -0.55 -14.77 15.56 -25.77 -0.40 -15.17 16 14 O -0.21 -5.88 9.72 -20.70 -0.20 -6.08 16 15 C -0.38 -11.28 9.65 30.92 0.30 -10.98 16 16 H 0.10 2.85 6.86 -52.49 -0.36 2.49 16 17 C 0.04 1.22 5.49 -17.53 -0.10 1.12 16 18 N -0.86 -24.93 13.67 55.48 0.76 -24.17 16 19 Si 0.94 21.17 29.55 -169.99 -5.02 16.14 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 23 C -0.15 -2.16 9.64 -39.43 -0.38 -2.54 16 24 H 0.10 0.61 8.14 -51.92 -0.42 0.18 16 25 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 26 H 0.05 0.37 7.68 -51.93 -0.40 -0.03 16 27 H 0.12 1.12 6.30 -52.49 -0.33 0.79 16 28 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 29 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 30 H 0.10 1.77 8.06 -51.93 -0.42 1.35 16 31 H 0.08 1.20 8.08 -51.93 -0.42 0.78 16 32 H 0.38 5.54 8.79 45.56 0.40 5.94 16 33 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.14 2.02 8.06 -52.49 -0.42 1.59 16 LS Contribution 305.41 15.07 4.60 4.60 Total: -1.00 -34.26 305.41 -5.40 -39.66 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -3.17 Total: 6.67 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -1.07 Total: -7.36 kcal Atomic # 7 Polarization: -24.93 SS G_CDS: 0.76 Total: -24.17 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -1.49 Total: -35.55 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.26 -5.40 -39.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785704757.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.887 kcal (2) G-P(sol) polarization free energy of solvation -34.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds