Wall clock time and date at job start Mon Mar 30 2020 01:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00083 * 2 1 4 4 C 1.38757 * 120.05426 * 0.29963 * 3 2 1 5 5 C 1.38119 * 119.94413 * 180.21111 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.50981 * 5 4 3 7 7 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 8 8 C 1.50696 * 119.97662 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47405 * 89.99580 * 8 7 6 10 10 H 1.09001 * 109.47100 * 55.00080 * 9 8 7 11 11 O 1.42892 * 109.47079 * 295.00417 * 9 8 7 12 12 C 1.50693 * 109.47130 * 174.99831 * 9 8 7 13 13 O 1.21217 * 119.99716 * 115.00114 * 12 9 8 14 14 O 1.34318 * 120.00550 * 295.00104 * 12 9 8 15 15 C 1.34913 * 117.00069 * 179.97438 * 14 12 9 16 16 H 1.08002 * 120.00470 * 0.02562 * 15 14 12 17 17 C 1.38757 * 119.99685 * 180.02562 * 15 14 12 18 18 N 1.31437 * 120.00562 * 0.02562 * 17 15 14 19 19 Si 1.86809 * 119.99909 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46843 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46819 * 119.99862 * 19 17 15 22 22 H 1.48495 * 109.47234 * 240.00089 * 19 17 15 23 23 C 1.38171 * 120.05202 * 359.97438 * 7 6 5 24 24 H 1.09007 * 109.46894 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47190 * 299.99904 * 1 2 3 26 26 H 1.09000 * 109.47473 * 60.00460 * 1 2 3 27 27 H 1.07998 * 120.02597 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.97592 * 179.79533 * 5 4 3 29 29 H 1.08006 * 119.94478 * 180.25913 * 6 5 4 30 30 H 1.09005 * 109.47005 * 209.99445 * 8 7 6 31 31 H 1.08997 * 109.46936 * 329.99322 * 8 7 6 32 32 H 0.96702 * 113.99876 * 299.99403 * 11 9 8 33 33 H 0.96999 * 120.00656 * 180.02562 * 18 17 15 34 34 H 1.07997 * 120.02798 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0063 5 6 1.9208 3.6047 0.0019 6 6 3.3018 3.6757 0.0014 7 6 4.0560 2.5171 0.0004 8 6 5.5607 2.5982 0.0005 9 6 6.0700 2.6244 1.4430 10 1 5.6813 1.7600 1.9814 11 8 5.6268 3.8227 2.0829 12 6 7.5764 2.5815 1.4448 13 8 8.2091 3.5275 1.8621 14 8 8.2179 1.4952 0.9839 15 6 9.5665 1.5219 1.0130 16 1 10.0813 2.3909 1.3955 17 6 10.2920 0.4329 0.5516 18 7 9.6657 -0.6245 0.0856 19 14 12.1593 0.4701 0.5912 20 1 12.6166 1.7647 1.1571 21 1 12.6587 -0.6434 1.4372 22 1 12.6869 0.3186 -0.7886 23 6 3.4311 1.2848 0.0003 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 0.2128 2.3203 0.0108 28 1 1.3339 4.5114 0.0034 29 1 3.7922 4.6381 0.0022 30 1 5.9714 1.7294 -0.5140 31 1 5.8757 3.5068 -0.5126 32 1 5.9359 4.6337 1.6565 33 1 10.1729 -1.3859 -0.2367 34 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785704757.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:59 Heat of formation + Delta-G solvation = -171.059443 kcal Electronic energy + Delta-G solvation = -19581.995854 eV Core-core repulsion = 16251.634202 eV Total energy + Delta-G solvation = -3330.361652 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.41895 -40.93698 -39.01276 -37.96152 -36.76622 -34.38459 -33.69059 -31.44788 -30.16798 -28.12883 -27.52493 -25.60848 -23.42788 -22.23803 -21.92087 -19.94140 -19.23779 -18.61894 -17.65119 -17.21620 -16.92606 -16.74044 -16.62738 -16.44123 -16.11121 -15.69716 -15.02516 -14.72057 -14.48184 -14.12495 -13.75265 -13.49920 -13.25269 -12.99707 -12.80718 -12.71252 -12.44659 -12.42188 -12.19700 -12.07194 -11.99791 -11.75767 -11.71544 -10.84222 -10.72408 -9.74906 -9.11043 -8.56606 -6.37090 0.33996 0.53776 1.23596 1.33879 1.52222 1.56177 2.07013 2.39878 2.59828 2.83451 2.95117 3.21753 3.80892 3.88307 3.93012 3.99548 4.22279 4.33050 4.42431 4.44826 4.48845 4.58826 4.65465 4.74766 4.84499 4.92550 5.11070 5.13724 5.36450 5.51589 5.69511 5.79143 5.86695 6.49685 6.50981 6.60567 6.88187 7.68686 8.63335 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.026773 B = 0.004298 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.569995 B = 6513.845222 C = 7325.391274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.342 6.342 3 C 0.113 3.887 4 C -0.210 4.210 5 C -0.079 4.079 6 C -0.146 4.146 7 C -0.041 4.041 8 C -0.097 4.097 9 C 0.153 3.847 10 H 0.127 0.873 11 O -0.533 6.533 12 C 0.365 3.635 13 O -0.577 6.577 14 O -0.235 6.235 15 C -0.424 4.424 16 H 0.081 0.919 17 C -0.001 4.001 18 N -0.898 5.898 19 Si 1.017 2.983 20 H -0.265 1.265 21 H -0.260 1.260 22 H -0.258 1.258 23 C -0.172 4.172 24 H 0.115 0.885 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.153 0.847 28 H 0.156 0.844 29 H 0.140 0.860 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.391 0.609 33 H 0.280 0.720 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.193 4.525 -2.937 18.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.257 6.257 3 C 0.068 3.932 4 C -0.228 4.228 5 C -0.096 4.096 6 C -0.164 4.164 7 C -0.041 4.041 8 C -0.135 4.135 9 C 0.092 3.908 10 H 0.144 0.856 11 O -0.340 6.340 12 C 0.213 3.787 13 O -0.475 6.475 14 O -0.143 6.143 15 C -0.500 4.500 16 H 0.099 0.901 17 C -0.202 4.202 18 N -0.535 5.535 19 Si 0.835 3.165 20 H -0.189 1.189 21 H -0.185 1.185 22 H -0.182 1.182 23 C -0.190 4.190 24 H 0.133 0.867 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.171 0.829 28 H 0.174 0.826 29 H 0.158 0.842 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.241 0.759 33 H 0.089 0.911 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.209 3.925 -2.532 18.798 hybrid contribution 1.112 0.215 -0.239 1.157 sum -17.097 4.140 -2.771 17.808 Atomic orbital electron populations 1.23341 0.76367 1.05447 1.02384 1.86059 1.23633 1.27132 1.88826 1.19102 0.91990 0.85136 0.96966 1.21519 1.01133 0.91774 1.08403 1.21276 0.94194 0.98015 0.96151 1.21190 0.94396 0.97950 1.02859 1.19357 0.93839 0.92992 0.97932 1.21115 0.92555 1.05159 0.94637 1.21106 0.83565 0.90574 0.95541 0.85582 1.86554 1.74050 1.15457 1.57932 1.25344 0.93823 0.81734 0.77845 1.90531 1.69782 1.38572 1.48646 1.83902 1.22399 1.38887 1.69112 1.21472 0.78270 1.04590 1.45648 0.90110 1.26528 1.06095 0.93257 0.94286 1.70069 1.38791 1.05844 1.38770 0.84584 0.73421 0.79142 0.79314 1.18903 1.18478 1.18235 1.20443 0.92430 0.98328 1.07842 0.86683 0.91568 0.91406 0.82928 0.82617 0.84245 0.89924 0.88612 0.75888 0.91073 0.86442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.34 -8.61 10.50 -92.38 -0.97 -9.58 16 3 C 0.11 3.00 6.69 22.51 0.15 3.15 16 4 C -0.21 -4.32 9.04 22.37 0.20 -4.12 16 5 C -0.08 -1.54 10.04 22.25 0.22 -1.32 16 6 C -0.15 -3.42 9.39 22.28 0.21 -3.22 16 7 C -0.04 -1.18 4.97 -19.88 -0.10 -1.28 16 8 C -0.10 -3.14 5.01 29.85 0.15 -2.99 16 9 C 0.15 5.78 3.48 29.85 0.10 5.88 16 10 H 0.13 4.73 8.14 -2.39 -0.02 4.71 16 11 O -0.53 -18.00 12.49 -129.98 -1.62 -19.63 16 12 C 0.37 18.40 7.22 71.23 0.51 18.91 16 13 O -0.58 -31.72 15.56 27.17 0.42 -31.30 16 14 O -0.24 -13.79 9.72 14.88 0.14 -13.65 16 15 C -0.42 -25.81 9.65 67.94 0.66 -25.16 16 16 H 0.08 5.01 6.86 -2.91 -0.02 4.99 16 17 C 0.00 -0.04 5.49 84.88 0.47 0.43 16 18 N -0.90 -52.84 13.67 21.62 0.30 -52.54 16 19 Si 1.02 43.38 29.55 68.60 2.03 45.41 16 20 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 21 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 23 C -0.17 -5.21 9.64 22.37 0.22 -4.99 16 24 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 25 H 0.07 0.78 7.65 -2.39 -0.02 0.76 16 26 H 0.07 0.76 7.68 -2.39 -0.02 0.74 16 27 H 0.15 2.16 6.30 -2.91 -0.02 2.14 16 28 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 29 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 30 H 0.08 3.01 8.06 -2.38 -0.02 2.99 16 31 H 0.10 2.78 8.08 -2.39 -0.02 2.76 16 32 H 0.39 10.97 8.79 -74.06 -0.65 10.32 16 33 H 0.28 14.88 8.31 -92.71 -0.77 14.11 16 34 H 0.12 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -75.84 305.41 4.68 -71.17 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 0.48 Total: 23.45 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: 3.90 Total: -13.33 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 0.30 Total: -52.54 kcal Atomic # 8 Polarization: -72.13 SS G_CDS: -2.03 Total: -74.16 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -75.84 4.68 -71.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785704757.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.894 kcal (2) G-P(sol) polarization free energy of solvation -75.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds