Wall clock time and date at job start Mon Mar 30 2020 01:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35995 * 116.99510 * 2 1 4 4 C 1.38698 * 119.99843 * 0.27494 * 3 2 1 5 5 C 1.38130 * 119.99507 * 180.24049 * 4 3 2 6 6 C 1.38701 * 119.99962 * 359.48187 * 5 4 3 7 7 O 1.35982 * 119.99934 * 180.28437 * 6 5 4 8 8 C 1.42904 * 117.00225 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47233 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47059 * 179.97438 * 9 8 7 11 11 O 1.21206 * 119.99690 * 0.02562 * 10 9 8 12 12 O 1.34309 * 119.99989 * 179.97438 * 10 9 8 13 13 C 1.34918 * 116.99960 * 180.02562 * 12 10 9 14 14 H 1.07996 * 120.00196 * 0.02562 * 13 12 10 15 15 C 1.38760 * 119.99860 * 179.97438 * 13 12 10 16 16 N 1.31441 * 120.00130 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99629 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47416 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46907 * 120.00576 * 17 15 13 20 20 H 1.48499 * 109.47128 * 239.99894 * 17 15 13 21 21 C 1.38695 * 120.00147 * 0.26056 * 6 5 4 22 22 C 1.38135 * 119.99861 * 359.97438 * 21 6 5 23 23 H 1.08998 * 109.47223 * 299.99870 * 1 2 3 24 24 H 1.08999 * 109.46872 * 60.00367 * 1 2 3 25 25 H 1.09002 * 109.46510 * 180.02562 * 1 2 3 26 26 H 1.07998 * 120.00070 * 359.97438 * 4 3 2 27 27 H 1.08002 * 120.00169 * 179.76649 * 5 4 3 28 28 H 1.09001 * 109.46663 * 299.99591 * 8 7 6 29 29 H 1.08995 * 109.47194 * 59.99069 * 8 7 6 30 30 H 1.09001 * 109.47144 * 299.99519 * 9 8 7 31 31 H 1.09004 * 109.47011 * 59.99539 * 9 8 7 32 32 H 0.97002 * 119.99762 * 179.97438 * 16 15 13 33 33 H 1.08005 * 120.00034 * 180.02562 * 21 6 5 34 34 H 1.08001 * 119.99636 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2908 2.3749 0.0058 5 6 1.9178 3.6057 0.0007 6 6 3.3029 3.6783 0.0008 7 8 3.9202 4.8900 0.0017 8 6 5.3492 4.8901 0.0011 9 6 5.8591 6.3326 0.0017 10 6 7.3661 6.3327 0.0017 11 8 7.9722 5.2831 0.0009 12 8 8.0376 7.4959 0.0016 13 6 9.3849 7.4254 0.0011 14 1 9.8753 6.4632 0.0004 15 6 10.1406 8.5892 0.0004 16 7 9.5438 9.7603 0.0008 17 14 12.0060 8.4915 -0.0010 18 1 12.4272 7.0675 -0.0018 19 1 12.5360 9.1647 -1.2139 20 1 12.5379 9.1648 1.2110 21 6 4.0584 2.5152 0.0004 22 6 3.4313 1.2844 0.0006 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 0.2123 2.3183 0.0098 27 1 1.3296 4.5114 0.0014 28 1 5.7129 4.3755 0.8906 29 1 5.7123 4.3770 -0.8893 30 1 5.4955 6.8469 -0.8880 31 1 5.4960 6.8460 0.8920 32 1 10.0721 10.5738 0.0007 33 1 5.1370 2.5718 0.0009 34 1 4.0196 0.3787 0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789385710.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:43 Heat of formation + Delta-G solvation = -153.149178 kcal Electronic energy + Delta-G solvation = -18832.189718 eV Core-core repulsion = 15502.604713 eV Total energy + Delta-G solvation = -3329.585004 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.47188 -41.04239 -39.96620 -37.61882 -37.16033 -34.33909 -33.20259 -32.12416 -30.12282 -28.17882 -27.60387 -25.61766 -23.73986 -22.66010 -21.53616 -19.93475 -19.57601 -18.87825 -18.08698 -17.56884 -17.39045 -16.63391 -16.46612 -16.33108 -16.21996 -15.69373 -15.53878 -14.56651 -14.40842 -14.30581 -13.99520 -13.73351 -13.58058 -13.30723 -13.00365 -12.97035 -12.48131 -12.39954 -12.16646 -12.15734 -11.99218 -11.63661 -11.33602 -11.14978 -10.71932 -10.11028 -8.75314 -8.56200 -6.36447 0.23294 0.43660 1.27022 1.33956 1.52306 1.60005 1.77894 2.22229 2.42381 2.70951 2.95364 3.03224 3.63959 3.82512 3.88535 3.89173 4.04074 4.27209 4.31804 4.42975 4.44897 4.61636 4.67506 4.67693 4.75737 4.76691 4.94158 5.00080 5.16161 5.27898 5.33598 5.56833 5.80574 6.26096 6.50398 6.60441 6.88922 7.70838 8.64662 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.065615 B = 0.002839 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.630240 B = 9858.623179 C =10259.504505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.081 3.919 4 C -0.163 4.163 5 C -0.115 4.115 6 C 0.076 3.924 7 O -0.321 6.321 8 C 0.088 3.912 9 C -0.091 4.091 10 C 0.403 3.597 11 O -0.582 6.582 12 O -0.242 6.242 13 C -0.422 4.422 14 H 0.084 0.916 15 C -0.005 4.005 16 N -0.902 5.902 17 Si 1.019 2.981 18 H -0.264 1.264 19 H -0.260 1.260 20 H -0.260 1.260 21 C -0.177 4.177 22 C -0.123 4.123 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.117 0.883 26 H 0.164 0.836 27 H 0.151 0.849 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.280 0.720 33 H 0.135 0.865 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.094 -14.159 0.005 22.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.251 6.251 3 C 0.036 3.964 4 C -0.181 4.181 5 C -0.134 4.134 6 C 0.031 3.969 7 O -0.235 6.235 8 C 0.013 3.987 9 C -0.129 4.129 10 C 0.251 3.749 11 O -0.480 6.480 12 O -0.150 6.150 13 C -0.497 4.497 14 H 0.102 0.898 15 C -0.205 4.205 16 N -0.539 5.539 17 Si 0.838 3.162 18 H -0.188 1.188 19 H -0.184 1.184 20 H -0.184 1.184 21 C -0.196 4.196 22 C -0.142 4.142 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.135 0.865 26 H 0.182 0.818 27 H 0.169 0.831 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.089 0.911 33 H 0.152 0.848 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -17.902 -14.182 0.005 22.839 hybrid contribution 0.933 0.077 -0.002 0.936 sum -16.969 -14.105 0.003 22.066 Atomic orbital electron populations 1.23352 0.76484 1.05564 1.02347 1.86060 1.23433 1.26374 1.89224 1.19048 0.92264 0.85066 1.00012 1.21324 1.01409 0.90392 1.05017 1.20496 0.90708 0.99292 1.02901 1.19191 0.93054 0.83999 1.00671 1.85937 1.20748 1.27476 1.89361 1.22219 0.77784 0.96091 1.02647 1.20834 0.86135 0.98074 1.07841 1.23888 0.92164 0.82336 0.76536 1.90537 1.71876 1.33783 1.51823 1.83884 1.21911 1.32603 1.76564 1.21486 0.78015 0.95223 1.54990 0.89822 1.26574 1.06171 0.93162 0.94616 1.70081 1.38762 0.98333 1.46727 0.84547 0.73270 0.79148 0.79252 1.18818 1.18433 1.18420 1.21273 1.00741 0.91822 1.05724 1.20390 0.92191 0.98059 1.03564 0.91599 0.91599 0.86464 0.81829 0.83141 0.91446 0.91454 0.86069 0.86075 0.91107 0.84760 0.84108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.34 -6.50 10.50 -93.49 -0.98 -7.48 16 3 C 0.08 1.75 6.69 22.49 0.15 1.90 16 4 C -0.16 -3.02 9.03 22.35 0.20 -2.82 16 5 C -0.12 -2.51 9.98 22.35 0.22 -2.29 16 6 C 0.08 2.03 6.69 22.49 0.15 2.18 16 7 O -0.32 -9.47 10.14 -93.35 -0.95 -10.42 16 8 C 0.09 2.80 4.03 71.98 0.29 3.09 16 9 C -0.09 -3.23 6.18 29.85 0.18 -3.04 16 10 C 0.40 19.81 7.91 71.24 0.56 20.37 16 11 O -0.58 -31.03 15.22 20.79 0.32 -30.72 16 12 O -0.24 -14.12 9.75 14.92 0.15 -13.97 16 13 C -0.42 -25.48 9.65 67.94 0.66 -24.82 16 14 H 0.08 5.12 6.86 -2.91 -0.02 5.10 16 15 C 0.00 -0.28 5.49 84.88 0.47 0.19 16 16 N -0.90 -53.15 13.67 21.63 0.30 -52.86 16 17 Si 1.02 43.23 29.55 68.60 2.03 45.25 16 18 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 19 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 20 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 21 C -0.18 -4.64 9.03 22.35 0.20 -4.44 16 22 C -0.12 -2.93 9.98 22.35 0.22 -2.71 16 23 H 0.07 0.51 7.65 -2.39 -0.02 0.49 16 24 H 0.07 0.51 7.67 -2.39 -0.02 0.49 16 25 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.16 1.90 6.29 -2.91 -0.02 1.88 16 27 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 28 H 0.07 2.18 7.62 -2.39 -0.02 2.16 16 29 H 0.07 2.18 7.62 -2.39 -0.02 2.16 16 30 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 31 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 32 H 0.28 14.86 8.31 -92.71 -0.77 14.09 16 33 H 0.13 3.56 6.29 -2.91 -0.02 3.54 16 34 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -73.30 303.45 6.39 -66.91 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 1.12 Total: 14.38 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: 4.42 Total: -11.10 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.30 Total: -52.86 kcal Atomic # 8 Polarization: -61.12 SS G_CDS: -1.47 Total: -62.59 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -73.30 6.39 -66.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789385710.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.239 kcal (2) G-P(sol) polarization free energy of solvation -73.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds