Wall clock time and date at job start Mon Mar 30 2020 00:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46682 * 2 1 4 4 C 1.50703 * 109.47058 * 240.01082 * 2 1 3 5 5 H 1.08005 * 119.99551 * 274.99216 * 4 2 1 6 6 C 1.37868 * 120.00466 * 94.99194 * 4 2 1 7 7 N 1.31512 * 120.00194 * 184.91737 * 6 4 2 8 8 Si 1.86802 * 120.00167 * 4.91686 * 6 4 2 9 9 H 1.48496 * 109.47292 * 84.83080 * 8 6 4 10 10 H 1.48494 * 109.47356 * 204.83526 * 8 6 4 11 11 H 1.48500 * 109.46883 * 324.83313 * 8 6 4 12 12 O 1.45191 * 109.47471 * 120.00376 * 2 1 3 13 13 C 1.34900 * 117.00367 * 270.00290 * 12 2 1 14 14 O 1.21619 * 119.99642 * 359.97438 * 13 12 2 15 15 C 1.46468 * 120.00302 * 180.02562 * 13 12 2 16 16 O 1.35421 * 126.12521 * 359.68789 * 15 13 12 17 17 C 1.34382 * 109.47050 * 179.79018 * 16 15 13 18 18 C 1.33936 * 108.57385 * 0.40073 * 17 16 15 19 19 C 1.35283 * 126.12826 * 179.97438 * 15 13 12 20 20 C 1.50715 * 130.56889 * 0.27036 * 19 15 13 21 21 C 1.53677 * 107.44139 * 164.21525 * 20 19 15 22 22 O 1.42908 * 109.96872 * 48.23132 * 21 20 19 23 23 C 1.43515 * 114.75587 * 287.62469 * 22 21 20 24 24 H 1.08998 * 109.47049 * 295.02248 * 1 2 3 25 25 H 1.09004 * 109.47150 * 175.03073 * 1 2 3 26 26 H 1.08993 * 109.47646 * 55.02841 * 1 2 3 27 27 H 0.97002 * 119.99993 * 180.02562 * 7 6 4 28 28 H 1.08003 * 125.71230 * 180.12984 * 17 16 15 29 29 H 1.09000 * 109.86724 * 283.70019 * 20 19 15 30 30 H 1.09004 * 109.86363 * 44.73521 * 20 19 15 31 31 H 1.08998 * 109.38933 * 288.07471 * 21 20 19 32 32 H 1.09003 * 109.30714 * 168.33037 * 21 20 19 33 33 H 1.09002 * 109.82009 * 291.94450 * 23 22 21 34 34 H 1.08996 * 109.87390 * 171.04661 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.1355 -1.7853 -1.2293 6 6 2.3601 0.0124 -2.3581 7 7 2.7057 -0.6127 -3.4624 8 14 2.3132 1.8794 -2.3174 9 1 3.5987 2.3952 -1.7822 10 1 2.1052 2.3994 -3.6927 11 1 1.1983 2.3276 -1.4449 12 8 2.0140 -0.6845 1.1854 13 6 2.2182 0.0676 2.2865 14 8 1.9977 1.2632 2.2557 15 6 2.7063 -0.5555 3.5189 16 8 2.9862 -1.8691 3.6928 17 6 3.4148 -2.0731 4.9500 18 6 3.4074 -0.9014 5.5987 19 6 2.9533 0.0771 4.6889 20 6 2.8073 1.5284 5.0684 21 6 2.8433 1.6092 6.6026 22 8 3.9478 0.8543 7.1053 23 6 3.7918 -0.5697 7.0181 24 1 -0.3633 0.4347 0.9312 25 1 -0.3634 -1.0238 -0.0890 26 1 -0.3634 0.5890 -0.8420 27 1 2.9366 -0.1043 -4.2555 28 1 3.7111 -3.0236 5.3685 29 1 3.6304 2.1059 4.6477 30 1 1.8568 1.9138 4.6995 31 1 1.9152 1.2063 7.0081 32 1 2.9488 2.6507 6.9063 33 1 3.0072 -0.8980 7.6997 34 1 4.7310 -1.0615 7.2713 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797020604.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:32 Heat of formation + Delta-G solvation = -116.813417 kcal Electronic energy + Delta-G solvation = -20185.153979 eV Core-core repulsion = 16857.144611 eV Total energy + Delta-G solvation = -3328.009368 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.84164 -39.48463 -38.69841 -36.02464 -33.65618 -33.11829 -32.18364 -30.75053 -29.31734 -26.38200 -25.47110 -24.40242 -23.18238 -21.02790 -19.76747 -19.67862 -18.07443 -16.96743 -16.60749 -16.49660 -16.22685 -15.73667 -15.35899 -15.05682 -14.79891 -14.30242 -13.63512 -13.42367 -12.97710 -12.80048 -12.68659 -12.45334 -12.28533 -11.84368 -11.72142 -11.16745 -11.09163 -11.03432 -10.75844 -10.37903 -10.00250 -9.85386 -9.61059 -9.52084 -9.19479 -8.76854 -8.68729 -6.31000 -4.35477 1.05009 2.11775 2.66149 3.18156 3.25920 3.26676 3.31373 3.46691 3.62500 4.22943 4.30668 4.56714 4.76306 4.90056 5.02026 5.08275 5.08938 5.18825 5.40680 5.55049 5.66973 5.76241 5.87360 5.94165 6.10079 6.22214 6.36651 6.43903 6.59002 6.81006 6.93282 7.09174 7.19341 7.43072 8.12958 8.49067 8.79334 9.27221 10.80190 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.032445 B = 0.004975 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.800866 B = 5626.711243 C = 6025.291717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.181 3.819 3 H 0.049 0.951 4 C -0.519 4.519 5 H 0.087 0.913 6 C 0.083 3.917 7 N -0.879 5.879 8 Si 0.869 3.131 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.260 1.260 12 O -0.334 6.334 13 C 0.537 3.463 14 O -0.501 6.501 15 C -0.032 4.032 16 O -0.148 6.148 17 C 0.016 3.984 18 C -0.244 4.244 19 C -0.090 4.090 20 C -0.088 4.088 21 C 0.064 3.936 22 O -0.380 6.380 23 C 0.138 3.862 24 H 0.030 0.970 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.271 0.729 28 H 0.213 0.787 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.101 0.899 33 H 0.066 0.934 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.193 0.742 20.263 20.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.128 3.872 3 H 0.067 0.933 4 C -0.556 4.556 5 H 0.105 0.895 6 C -0.121 4.121 7 N -0.516 5.516 8 Si 0.695 3.305 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.184 1.184 12 O -0.250 6.250 13 C 0.381 3.619 14 O -0.393 6.393 15 C -0.082 4.082 16 O -0.043 6.043 17 C -0.054 4.054 18 C -0.246 4.246 19 C -0.092 4.092 20 C -0.125 4.125 21 C -0.013 4.013 22 O -0.298 6.298 23 C 0.062 3.938 24 H 0.049 0.951 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.229 0.771 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.072 0.928 32 H 0.119 0.881 33 H 0.084 0.916 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.284 0.982 19.810 19.837 hybrid contribution -0.158 0.810 -0.277 0.871 sum 0.127 1.793 19.534 19.616 Atomic orbital electron populations 1.22246 0.97220 1.01826 0.99800 1.21125 0.91678 0.94174 0.80172 0.93305 1.20788 1.45563 0.96428 0.92834 0.89521 1.24908 0.93419 0.98678 0.95143 1.69850 1.43702 1.36303 1.01706 0.86963 0.79990 0.85687 0.77868 1.19484 1.20578 1.18429 1.86877 1.75124 1.42766 1.20189 1.19311 0.74907 0.84775 0.82914 1.90849 1.49708 1.14840 1.83865 1.20583 1.10826 0.81752 0.95039 1.84473 1.64340 1.25775 1.29730 1.23701 0.99852 0.99806 0.82000 1.20951 1.10121 0.93720 0.99809 1.20157 1.00049 0.97527 0.91439 1.20910 1.04641 0.90619 0.96363 1.22696 0.89404 0.96659 0.92509 1.87973 1.42448 1.16792 1.82610 1.21007 1.01708 0.81784 0.89326 0.95070 0.92232 0.91726 0.91881 0.77091 0.88981 0.88372 0.92754 0.88073 0.91586 0.87621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.53 37.16 0.35 -3.07 16 2 C 0.18 4.61 2.23 -27.88 -0.06 4.55 16 3 H 0.05 1.28 4.31 -51.93 -0.22 1.06 16 4 C -0.52 -14.90 9.24 -34.44 -0.32 -15.22 16 5 H 0.09 2.69 8.06 -52.48 -0.42 2.26 16 6 C 0.08 2.38 5.47 -17.82 -0.10 2.29 16 7 N -0.88 -26.20 13.96 55.43 0.77 -25.42 16 8 Si 0.87 21.37 26.99 -169.99 -4.59 16.79 16 9 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.26 -6.19 6.82 56.52 0.39 -5.80 16 12 O -0.33 -8.13 9.88 -42.33 -0.42 -8.55 16 13 C 0.54 11.65 7.90 34.04 0.27 11.92 16 14 O -0.50 -11.26 14.90 -19.36 -0.29 -11.55 16 15 C -0.03 -0.58 7.17 -37.32 -0.27 -0.85 16 16 O -0.15 -2.45 10.70 2.18 0.02 -2.42 16 17 C 0.02 0.19 12.06 29.22 0.35 0.54 16 18 C -0.24 -3.01 6.04 -105.02 -0.63 -3.64 16 19 C -0.09 -1.38 6.02 -104.58 -0.63 -2.01 16 20 C -0.09 -1.18 5.70 -27.52 -0.16 -1.33 16 21 C 0.06 0.67 6.75 37.51 0.25 0.92 16 22 O -0.38 -4.40 10.70 -35.23 -0.38 -4.78 16 23 C 0.14 1.30 7.27 36.03 0.26 1.57 16 24 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 26 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 27 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.21 1.35 8.06 -52.48 -0.42 0.93 16 29 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.10 1.33 7.65 -51.93 -0.40 0.93 16 31 H 0.05 0.50 8.08 -51.93 -0.42 0.08 16 32 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 295.02 15.07 4.45 4.45 Total: -1.00 -32.88 295.02 -5.10 -37.99 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -4.00 Total: -2.16 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -0.68 Total: -4.34 kcal Atomic # 7 Polarization: -26.20 SS G_CDS: 0.77 Total: -25.42 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -1.06 Total: -27.30 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.59 Total: 16.79 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.88 -5.10 -37.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797020604.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.828 kcal (2) G-P(sol) polarization free energy of solvation -32.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds