Wall clock time and date at job start Mon Mar 30 2020 00:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46682 * 2 1 4 4 C 1.50703 * 109.47058 * 240.01082 * 2 1 3 5 5 H 1.08005 * 119.99551 * 274.99216 * 4 2 1 6 6 C 1.37868 * 120.00466 * 94.99194 * 4 2 1 7 7 N 1.31512 * 120.00194 * 184.91737 * 6 4 2 8 8 Si 1.86802 * 120.00167 * 4.91686 * 6 4 2 9 9 H 1.48496 * 109.47292 * 84.83080 * 8 6 4 10 10 H 1.48494 * 109.47356 * 204.83526 * 8 6 4 11 11 H 1.48500 * 109.46883 * 324.83313 * 8 6 4 12 12 O 1.45191 * 109.47471 * 120.00376 * 2 1 3 13 13 C 1.34900 * 117.00367 * 270.00290 * 12 2 1 14 14 O 1.21619 * 119.99642 * 359.97438 * 13 12 2 15 15 C 1.46468 * 120.00302 * 180.02562 * 13 12 2 16 16 O 1.35421 * 126.12521 * 359.68789 * 15 13 12 17 17 C 1.34382 * 109.47050 * 179.79018 * 16 15 13 18 18 C 1.33936 * 108.57385 * 0.40073 * 17 16 15 19 19 C 1.35283 * 126.12826 * 179.97438 * 15 13 12 20 20 C 1.50715 * 130.56889 * 0.27036 * 19 15 13 21 21 C 1.53677 * 107.44139 * 164.21525 * 20 19 15 22 22 O 1.42908 * 109.96872 * 48.23132 * 21 20 19 23 23 C 1.43515 * 114.75587 * 287.62469 * 22 21 20 24 24 H 1.08998 * 109.47049 * 295.02248 * 1 2 3 25 25 H 1.09004 * 109.47150 * 175.03073 * 1 2 3 26 26 H 1.08993 * 109.47646 * 55.02841 * 1 2 3 27 27 H 0.97002 * 119.99993 * 180.02562 * 7 6 4 28 28 H 1.08003 * 125.71230 * 180.12984 * 17 16 15 29 29 H 1.09000 * 109.86724 * 283.70019 * 20 19 15 30 30 H 1.09004 * 109.86363 * 44.73521 * 20 19 15 31 31 H 1.08998 * 109.38933 * 288.07471 * 21 20 19 32 32 H 1.09003 * 109.30714 * 168.33037 * 21 20 19 33 33 H 1.09002 * 109.82009 * 291.94450 * 23 22 21 34 34 H 1.08996 * 109.87390 * 171.04661 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.1355 -1.7853 -1.2293 6 6 2.3601 0.0124 -2.3581 7 7 2.7057 -0.6127 -3.4624 8 14 2.3132 1.8794 -2.3174 9 1 3.5987 2.3952 -1.7822 10 1 2.1052 2.3994 -3.6927 11 1 1.1983 2.3276 -1.4449 12 8 2.0140 -0.6845 1.1854 13 6 2.2182 0.0676 2.2865 14 8 1.9977 1.2632 2.2557 15 6 2.7063 -0.5555 3.5189 16 8 2.9862 -1.8691 3.6928 17 6 3.4148 -2.0731 4.9500 18 6 3.4074 -0.9014 5.5987 19 6 2.9533 0.0771 4.6889 20 6 2.8073 1.5284 5.0684 21 6 2.8433 1.6092 6.6026 22 8 3.9478 0.8543 7.1053 23 6 3.7918 -0.5697 7.0181 24 1 -0.3633 0.4347 0.9312 25 1 -0.3634 -1.0238 -0.0890 26 1 -0.3634 0.5890 -0.8420 27 1 2.9366 -0.1043 -4.2555 28 1 3.7111 -3.0236 5.3685 29 1 3.6304 2.1059 4.6477 30 1 1.8568 1.9138 4.6995 31 1 1.9152 1.2063 7.0081 32 1 2.9488 2.6507 6.9063 33 1 3.0072 -0.8980 7.6997 34 1 4.7310 -1.0615 7.2713 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797020604.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:31 Heat of formation + Delta-G solvation = -139.292495 kcal Electronic energy + Delta-G solvation = -20186.128745 eV Core-core repulsion = 16857.144611 eV Total energy + Delta-G solvation = -3328.984134 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.97272 -41.22418 -39.56612 -37.80831 -35.25494 -34.71248 -33.19167 -32.65408 -30.52202 -27.53185 -27.21575 -25.72789 -24.28669 -22.73008 -21.25249 -20.82775 -19.65705 -18.75170 -18.18814 -17.82274 -17.26606 -16.96574 -16.63120 -16.21609 -16.15218 -15.85803 -14.93693 -14.77227 -14.50432 -14.41939 -14.29922 -13.74755 -13.67029 -13.27667 -13.08909 -12.97346 -12.65227 -12.63640 -12.13515 -11.92986 -11.76151 -11.53793 -11.28486 -10.93005 -10.85388 -10.56950 -9.80374 -8.51287 -6.62488 -0.26186 1.11052 1.22349 1.26863 1.37465 1.38637 1.72240 2.09296 2.16740 2.81446 2.87756 3.31686 3.59025 3.74572 3.88593 4.11582 4.18048 4.22042 4.31156 4.51364 4.51838 4.54811 4.68479 4.73443 4.74395 4.82221 4.92655 5.00207 5.21055 5.25196 5.29915 5.43376 5.72008 6.05415 6.13817 6.45628 6.68961 7.04786 8.64191 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.032445 B = 0.004975 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.800866 B = 5626.711243 C = 6025.291717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.182 3.818 3 H 0.043 0.957 4 C -0.536 4.536 5 H 0.045 0.955 6 C 0.037 3.963 7 N -0.921 5.921 8 Si 0.929 3.071 9 H -0.269 1.269 10 H -0.262 1.262 11 H -0.246 1.246 12 O -0.355 6.355 13 C 0.533 3.467 14 O -0.519 6.519 15 C -0.087 4.087 16 O -0.174 6.174 17 C 0.044 3.956 18 C -0.253 4.253 19 C -0.077 4.077 20 C -0.095 4.095 21 C 0.070 3.930 22 O -0.395 6.395 23 C 0.137 3.863 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.278 0.722 28 H 0.267 0.733 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.122 0.878 33 H 0.093 0.907 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.323 1.379 23.268 23.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.129 3.871 3 H 0.060 0.940 4 C -0.573 4.573 5 H 0.063 0.937 6 C -0.165 4.165 7 N -0.558 5.558 8 Si 0.751 3.249 9 H -0.195 1.195 10 H -0.187 1.187 11 H -0.170 1.170 12 O -0.271 6.271 13 C 0.380 3.620 14 O -0.412 6.412 15 C -0.136 4.136 16 O -0.070 6.070 17 C -0.025 4.025 18 C -0.254 4.254 19 C -0.079 4.079 20 C -0.133 4.133 21 C -0.007 4.007 22 O -0.314 6.314 23 C 0.061 3.939 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.283 0.717 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.140 0.860 33 H 0.111 0.889 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.408 1.616 22.834 22.894 hybrid contribution -0.122 0.462 -1.045 1.149 sum 0.286 2.078 21.789 21.889 Atomic orbital electron populations 1.22152 0.94901 1.02353 1.01061 1.20969 0.93350 0.93123 0.79663 0.93956 1.20893 1.46518 0.94840 0.95050 0.93659 1.25684 0.92753 1.03615 0.94426 1.69954 1.44842 1.38461 1.02556 0.86008 0.80335 0.79551 0.78960 1.19457 1.18688 1.16992 1.86811 1.76031 1.43354 1.20898 1.19746 0.74415 0.84750 0.83104 1.90804 1.50772 1.15338 1.84293 1.20111 1.15722 0.83200 0.94548 1.84442 1.65292 1.25004 1.32305 1.24867 0.96031 1.01778 0.79803 1.21396 1.10065 0.92919 1.01046 1.20639 0.97365 0.99000 0.90922 1.21056 1.03843 0.89371 0.98992 1.22753 0.89945 0.98112 0.89866 1.87963 1.43041 1.18004 1.82365 1.21371 1.04045 0.80943 0.87515 0.93199 0.92054 0.91011 0.91254 0.71716 0.89874 0.89080 0.91242 0.85976 0.88903 0.84964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.57 9.53 71.98 0.69 -5.89 16 2 C 0.18 9.49 2.23 29.85 0.07 9.56 16 3 H 0.04 2.25 4.31 -2.39 -0.01 2.24 16 4 C -0.54 -32.02 9.24 25.60 0.24 -31.79 16 5 H 0.05 2.99 8.06 -2.91 -0.02 2.97 16 6 C 0.04 2.14 5.47 84.65 0.46 2.60 16 7 N -0.92 -56.32 13.96 21.44 0.30 -56.02 16 8 Si 0.93 44.26 26.99 68.60 1.85 46.11 16 9 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 10 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.25 -11.12 6.82 99.48 0.68 -10.44 16 12 O -0.35 -17.94 9.88 -56.92 -0.56 -18.50 16 13 C 0.53 23.82 7.90 69.97 0.55 24.38 16 14 O -0.52 -23.83 14.90 19.45 0.29 -23.54 16 15 C -0.09 -3.19 7.17 23.73 0.17 -3.02 16 16 O -0.17 -5.64 10.70 -14.57 -0.16 -5.79 16 17 C 0.04 0.88 12.06 66.84 0.81 1.68 16 18 C -0.25 -5.43 6.04 -20.12 -0.12 -5.55 16 19 C -0.08 -2.29 6.02 -19.84 -0.12 -2.41 16 20 C -0.10 -2.45 5.70 30.08 0.17 -2.28 16 21 C 0.07 1.25 6.75 72.21 0.49 1.74 16 22 O -0.40 -7.75 10.70 -148.98 -1.59 -9.35 16 23 C 0.14 1.97 7.27 71.25 0.52 2.49 16 24 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.06 2.66 8.14 -2.38 -0.02 2.65 16 26 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 27 H 0.28 15.61 8.31 -92.71 -0.77 14.83 16 28 H 0.27 1.94 8.06 -2.91 -0.02 1.92 16 29 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.09 2.45 7.65 -2.39 -0.02 2.43 16 31 H 0.07 1.05 8.08 -2.39 -0.02 1.03 16 32 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -75.10 295.02 5.14 -69.96 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: 1.09 Total: 5.61 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 3.92 Total: -8.48 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.30 Total: -56.02 kcal Atomic # 8 Polarization: -55.16 SS G_CDS: -2.02 Total: -57.18 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.85 Total: 46.11 kcal Total: -75.10 5.14 -69.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797020604.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.329 kcal (2) G-P(sol) polarization free energy of solvation -75.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds