Wall clock time and date at job start Mon Mar 30 2020 00:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46976 * 2 1 4 4 O 1.45202 * 109.47569 * 120.00040 * 2 1 3 5 5 C 1.34230 * 116.99836 * 270.00626 * 4 2 1 6 6 O 1.20833 * 119.99930 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00262 * 180.27336 * 5 4 2 8 8 C 1.52996 * 109.47491 * 179.72204 * 7 5 4 9 9 C 1.50702 * 109.47159 * 180.02562 * 8 7 5 10 10 H 1.08001 * 119.99766 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99802 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99900 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99548 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46838 * 90.00173 * 13 11 9 15 15 H 1.48500 * 109.46694 * 209.99659 * 13 11 9 16 16 H 1.48497 * 109.47261 * 329.99975 * 13 11 9 17 17 C 1.50698 * 109.47456 * 240.00171 * 2 1 3 18 18 O 1.21446 * 119.99795 * 259.99785 * 17 2 1 19 19 C 1.41314 * 120.00494 * 79.99263 * 17 2 1 20 20 C 1.38064 * 126.12114 * 179.97438 * 19 17 2 21 21 C 1.40122 * 106.51988 * 180.02562 * 20 19 17 22 22 C 1.35290 * 107.22657 * 0.02562 * 21 20 19 23 23 O 1.33840 * 109.06035 * 359.73210 * 22 21 20 24 24 H 1.08995 * 109.46854 * 299.99797 * 1 2 3 25 25 H 1.08999 * 109.47363 * 60.00439 * 1 2 3 26 26 H 1.09003 * 109.46976 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46801 * 299.72165 * 7 5 4 28 28 H 1.09000 * 109.47461 * 59.71633 * 7 5 4 29 29 H 1.09004 * 109.47066 * 299.99799 * 8 7 5 30 30 H 1.08994 * 109.47405 * 59.99969 * 8 7 5 31 31 H 0.96998 * 119.99342 * 179.97438 * 12 11 9 32 32 H 1.07994 * 126.74020 * 0.02933 * 20 19 17 33 33 H 1.07995 * 126.39117 * 179.97438 * 21 20 19 34 34 H 1.08001 * 125.46780 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0141 -0.6845 1.1855 5 6 2.2171 0.0640 2.2811 6 8 1.9980 1.2519 2.2503 7 6 2.7247 -0.5759 3.5475 8 6 2.8745 0.4911 4.6337 9 6 3.3828 -0.1488 5.8999 10 1 3.5788 -1.2105 5.9272 11 6 3.5974 0.6212 7.0234 12 7 3.3590 1.9141 6.9898 13 14 4.2266 -0.1723 8.5930 14 1 5.7115 -0.1502 8.5980 15 1 3.7165 0.5805 9.7670 16 1 3.7522 -1.5778 8.6619 17 6 2.0324 -0.7103 -1.2304 18 8 2.4070 -1.8631 -1.1556 19 6 2.0675 -0.0352 -2.4714 20 6 2.5015 -0.5609 -3.6719 21 6 2.3605 0.4554 -4.6262 22 6 1.8583 1.5374 -3.9879 23 8 1.6784 1.2382 -2.6958 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 2.0170 -1.3356 3.8796 28 1 3.6928 -1.0396 3.3576 29 1 3.5822 1.2508 4.3016 30 1 1.9065 0.9546 4.8236 31 1 3.5097 2.4556 7.7803 32 1 2.8761 -1.5594 -3.8422 33 1 2.6073 0.3879 -5.6754 34 1 1.6339 2.4883 -4.4481 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837739039.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:59 Heat of formation + Delta-G solvation = -114.207990 kcal Electronic energy + Delta-G solvation = -19323.341116 eV Core-core repulsion = 15995.444728 eV Total energy + Delta-G solvation = -3327.896388 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.08059 -40.40501 -39.13318 -36.19615 -33.60157 -33.54139 -32.46044 -31.06725 -30.17185 -26.21269 -25.53252 -23.34699 -22.25123 -21.69663 -20.12930 -19.76429 -18.11432 -17.38375 -16.76637 -16.62798 -16.15566 -15.88736 -15.56574 -14.54691 -14.48431 -14.29159 -13.65396 -13.45891 -13.36147 -13.09463 -12.95766 -12.58494 -12.30363 -12.15565 -11.63854 -11.21133 -10.95186 -10.70555 -10.61320 -10.48470 -10.07935 -10.03538 -9.90617 -9.54351 -9.17032 -9.10887 -8.36873 -6.00850 -4.05502 0.32730 1.85643 2.39517 2.50159 2.77702 2.87687 3.32831 3.38905 3.42213 3.85508 4.39846 4.44347 4.45459 4.79252 4.84434 4.95540 5.19109 5.23223 5.32899 5.34701 5.46619 5.59343 5.68397 5.86836 5.95455 6.13620 6.21084 6.39755 6.60933 6.89886 7.13814 7.67124 7.73706 7.98581 8.22919 8.39059 9.01482 9.58511 11.10189 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.044985 B = 0.003291 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.278342 B = 8505.353629 C = 8688.192606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.043 3.957 3 H 0.112 0.888 4 O -0.344 6.344 5 C 0.456 3.544 6 O -0.503 6.503 7 C -0.102 4.102 8 C 0.033 3.967 9 C -0.528 4.528 10 H 0.059 0.941 11 C 0.059 3.941 12 N -0.890 5.890 13 Si 0.896 3.104 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.273 1.273 17 C 0.438 3.562 18 O -0.413 6.413 19 C -0.111 4.111 20 C -0.103 4.103 21 C -0.232 4.232 22 C 0.011 3.989 23 O -0.151 6.151 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.262 0.738 32 H 0.164 0.836 33 H 0.160 0.840 34 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.709 -2.278 -23.541 24.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.014 4.014 3 H 0.130 0.870 4 O -0.262 6.262 5 C 0.300 3.700 6 O -0.389 6.389 7 C -0.140 4.140 8 C -0.004 4.004 9 C -0.566 4.566 10 H 0.077 0.923 11 C -0.143 4.143 12 N -0.528 5.528 13 Si 0.724 3.276 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.198 1.198 17 C 0.314 3.686 18 O -0.287 6.287 19 C -0.161 4.161 20 C -0.123 4.123 21 C -0.251 4.251 22 C -0.060 4.060 23 O -0.045 6.045 24 H 0.099 0.901 25 H 0.096 0.904 26 H 0.090 0.910 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.181 0.819 33 H 0.177 0.823 34 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -4.703 -2.181 -23.166 23.739 hybrid contribution 0.369 -0.100 0.496 0.626 sum -4.334 -2.281 -22.670 23.193 Atomic orbital electron populations 1.22048 0.91628 1.03765 1.04218 1.22829 0.96624 0.98422 0.83514 0.86992 1.86728 1.77462 1.42311 1.19656 1.24947 0.73672 0.86411 0.84941 1.90627 1.47768 1.16841 1.83668 1.21797 1.01849 1.02062 0.88284 1.19029 0.98568 0.92429 0.90364 1.21162 1.44835 0.94756 0.95883 0.92259 1.25021 0.95493 0.94825 0.98997 1.69994 1.48289 1.04988 1.29552 0.86535 0.79046 0.79363 0.82702 1.20602 1.21193 1.19763 1.19585 0.75488 0.87121 0.86363 1.90673 1.35501 1.16291 1.86262 1.21578 1.12171 0.84707 0.97616 1.22539 0.97999 1.01030 0.90697 1.21906 1.07971 0.93555 1.01693 1.24646 0.99648 1.00896 0.80774 1.84151 1.64536 1.27830 1.27964 0.90079 0.90414 0.91007 0.88739 0.88776 0.95570 0.95523 0.92859 0.81877 0.82262 0.76991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.53 37.16 0.35 -1.60 16 2 C 0.04 0.63 2.70 -27.89 -0.08 0.56 16 3 H 0.11 1.70 7.15 -51.93 -0.37 1.33 16 4 O -0.34 -6.18 9.50 -45.65 -0.43 -6.61 16 5 C 0.46 9.26 7.93 36.00 0.29 9.54 16 6 O -0.50 -11.38 15.20 -18.76 -0.29 -11.66 16 7 C -0.10 -2.15 5.75 -27.89 -0.16 -2.31 16 8 C 0.03 0.88 4.26 -27.88 -0.12 0.77 16 9 C -0.53 -14.90 9.11 -34.44 -0.31 -15.21 16 10 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -27.10 13.29 55.43 0.74 -26.37 16 13 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 17 C 0.44 6.10 6.20 -33.14 -0.21 5.90 16 18 O -0.41 -6.71 17.06 -13.33 -0.23 -6.94 16 19 C -0.11 -1.28 6.88 -38.48 -0.26 -1.54 16 20 C -0.10 -0.97 10.61 -38.94 -0.41 -1.39 16 21 C -0.23 -1.60 10.86 -39.93 -0.43 -2.03 16 22 C 0.01 0.07 12.06 29.68 0.36 0.43 16 23 O -0.15 -1.51 10.47 4.90 0.05 -1.46 16 24 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 28 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 29 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 30 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.21 0.47 8.06 -52.49 -0.42 0.05 16 LS Contribution 312.01 15.07 4.70 4.70 Total: -1.00 -34.28 312.01 -5.70 -39.98 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: -4.14 Total: -2.93 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -1.09 Total: -5.30 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.74 Total: -26.37 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.89 Total: -26.67 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.28 -5.70 -39.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837739039.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.232 kcal (2) G-P(sol) polarization free energy of solvation -34.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds