Wall clock time and date at job start Mon Mar 30 2020 00:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46976 * 2 1 4 4 O 1.45202 * 109.47569 * 120.00040 * 2 1 3 5 5 C 1.34230 * 116.99836 * 270.00626 * 4 2 1 6 6 O 1.20833 * 119.99930 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00262 * 180.27336 * 5 4 2 8 8 C 1.52996 * 109.47491 * 179.72204 * 7 5 4 9 9 C 1.50702 * 109.47159 * 180.02562 * 8 7 5 10 10 H 1.08001 * 119.99766 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99802 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99900 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99548 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46838 * 90.00173 * 13 11 9 15 15 H 1.48500 * 109.46694 * 209.99659 * 13 11 9 16 16 H 1.48497 * 109.47261 * 329.99975 * 13 11 9 17 17 C 1.50698 * 109.47456 * 240.00171 * 2 1 3 18 18 O 1.21446 * 119.99795 * 259.99785 * 17 2 1 19 19 C 1.41314 * 120.00494 * 79.99263 * 17 2 1 20 20 C 1.38064 * 126.12114 * 179.97438 * 19 17 2 21 21 C 1.40122 * 106.51988 * 180.02562 * 20 19 17 22 22 C 1.35290 * 107.22657 * 0.02562 * 21 20 19 23 23 O 1.33840 * 109.06035 * 359.73210 * 22 21 20 24 24 H 1.08995 * 109.46854 * 299.99797 * 1 2 3 25 25 H 1.08999 * 109.47363 * 60.00439 * 1 2 3 26 26 H 1.09003 * 109.46976 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46801 * 299.72165 * 7 5 4 28 28 H 1.09000 * 109.47461 * 59.71633 * 7 5 4 29 29 H 1.09004 * 109.47066 * 299.99799 * 8 7 5 30 30 H 1.08994 * 109.47405 * 59.99969 * 8 7 5 31 31 H 0.96998 * 119.99342 * 179.97438 * 12 11 9 32 32 H 1.07994 * 126.74020 * 0.02933 * 20 19 17 33 33 H 1.07995 * 126.39117 * 179.97438 * 21 20 19 34 34 H 1.08001 * 125.46780 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0141 -0.6845 1.1855 5 6 2.2171 0.0640 2.2811 6 8 1.9980 1.2519 2.2503 7 6 2.7247 -0.5759 3.5475 8 6 2.8745 0.4911 4.6337 9 6 3.3828 -0.1488 5.8999 10 1 3.5788 -1.2105 5.9272 11 6 3.5974 0.6212 7.0234 12 7 3.3590 1.9141 6.9898 13 14 4.2266 -0.1723 8.5930 14 1 5.7115 -0.1502 8.5980 15 1 3.7165 0.5805 9.7670 16 1 3.7522 -1.5778 8.6619 17 6 2.0324 -0.7103 -1.2304 18 8 2.4070 -1.8631 -1.1556 19 6 2.0675 -0.0352 -2.4714 20 6 2.5015 -0.5609 -3.6719 21 6 2.3605 0.4554 -4.6262 22 6 1.8583 1.5374 -3.9879 23 8 1.6784 1.2382 -2.6958 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 2.0170 -1.3356 3.8796 28 1 3.6928 -1.0396 3.3576 29 1 3.5822 1.2508 4.3016 30 1 1.9065 0.9546 4.8236 31 1 3.5097 2.4556 7.7803 32 1 2.8761 -1.5594 -3.8422 33 1 2.6073 0.3879 -5.6754 34 1 1.6339 2.4883 -4.4481 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837739039.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:59 Heat of formation + Delta-G solvation = -134.915066 kcal Electronic energy + Delta-G solvation = -19324.239043 eV Core-core repulsion = 15995.444728 eV Total energy + Delta-G solvation = -3328.794314 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.77213 -41.84250 -40.36068 -37.72350 -35.66771 -34.24642 -33.70023 -32.94784 -30.99538 -28.13582 -26.58823 -24.78331 -23.35568 -22.75010 -21.47473 -20.94710 -19.33741 -18.77513 -18.30122 -17.61878 -17.55139 -17.26406 -16.62952 -16.47935 -15.80221 -15.70808 -14.84219 -14.48008 -14.32154 -14.23632 -14.04487 -13.91932 -13.65474 -13.47213 -13.27650 -12.87422 -12.80367 -12.51943 -12.07994 -11.98702 -11.76941 -11.54337 -11.31748 -11.13002 -11.04719 -10.58044 -9.79465 -8.20529 -6.34156 -0.52315 1.12000 1.20240 1.38497 1.44699 1.45572 1.57057 1.69962 1.84009 2.42571 2.78862 3.13220 3.63776 3.76478 3.81974 3.84528 3.88673 4.08927 4.37051 4.41367 4.48106 4.54201 4.56109 4.82099 4.85008 4.89423 4.94923 5.23444 5.32504 5.45792 5.53752 5.72479 5.79614 6.12289 6.16385 6.69593 6.83741 7.35859 8.92097 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.044985 B = 0.003291 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.278342 B = 8505.353629 C = 8688.192606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.032 3.968 3 H 0.106 0.894 4 O -0.344 6.344 5 C 0.466 3.534 6 O -0.534 6.534 7 C -0.095 4.095 8 C 0.040 3.960 9 C -0.546 4.546 10 H 0.076 0.924 11 C -0.003 4.003 12 N -0.934 5.934 13 Si 0.974 3.026 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.257 1.257 17 C 0.445 3.555 18 O -0.452 6.452 19 C -0.153 4.153 20 C -0.092 4.092 21 C -0.237 4.237 22 C 0.034 3.966 23 O -0.166 6.166 24 H 0.068 0.932 25 H 0.104 0.896 26 H 0.078 0.922 27 H 0.117 0.883 28 H 0.113 0.887 29 H -0.009 1.009 30 H -0.006 1.006 31 H 0.264 0.736 32 H 0.169 0.831 33 H 0.192 0.808 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.647 -2.994 -25.171 25.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 H 0.124 0.876 4 O -0.261 6.261 5 C 0.311 3.689 6 O -0.423 6.423 7 C -0.132 4.132 8 C 0.003 3.997 9 C -0.583 4.583 10 H 0.094 0.906 11 C -0.201 4.201 12 N -0.574 5.574 13 Si 0.798 3.202 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.181 1.181 17 C 0.326 3.674 18 O -0.329 6.329 19 C -0.202 4.202 20 C -0.112 4.112 21 C -0.255 4.255 22 C -0.036 4.036 23 O -0.061 6.061 24 H 0.087 0.913 25 H 0.123 0.877 26 H 0.096 0.904 27 H 0.135 0.865 28 H 0.131 0.869 29 H 0.010 0.990 30 H 0.012 0.988 31 H 0.073 0.927 32 H 0.186 0.814 33 H 0.209 0.791 34 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -4.649 -2.919 -24.822 25.422 hybrid contribution 0.321 0.232 0.773 0.868 sum -4.328 -2.687 -24.050 24.583 Atomic orbital electron populations 1.22041 0.89644 1.04423 1.04930 1.23224 0.98394 0.98048 0.82691 0.87624 1.86670 1.77225 1.42167 1.20044 1.24626 0.73058 0.85802 0.85441 1.90615 1.49240 1.18101 1.84314 1.21558 1.03697 1.00599 0.87354 1.18796 0.95692 0.93042 0.92178 1.21633 1.44549 0.95667 0.96495 0.90610 1.26084 0.95568 0.95300 1.03136 1.70153 1.49593 1.06841 1.30810 0.85312 0.78540 0.78842 0.77517 1.19734 1.20987 1.18092 1.19489 0.74475 0.86675 0.86800 1.90650 1.37896 1.17546 1.86826 1.21133 1.16051 0.85894 0.97155 1.22873 0.95910 1.01815 0.90610 1.22313 1.07817 0.92593 1.02815 1.25696 0.96358 1.02270 0.79291 1.84148 1.64976 1.27159 1.29858 0.91251 0.87729 0.90351 0.86501 0.86873 0.99027 0.98777 0.92694 0.81363 0.79121 0.72521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.53 71.98 0.69 -3.05 16 2 C 0.03 0.98 2.70 29.85 0.08 1.06 16 3 H 0.11 3.33 7.15 -2.39 -0.02 3.31 16 4 O -0.34 -12.57 9.50 -45.30 -0.43 -13.00 16 5 C 0.47 19.36 7.93 71.23 0.56 19.92 16 6 O -0.53 -25.17 15.20 21.94 0.33 -24.84 16 7 C -0.09 -4.02 5.75 29.85 0.17 -3.85 16 8 C 0.04 2.21 4.26 29.85 0.13 2.34 16 9 C -0.55 -30.98 9.11 25.60 0.23 -30.75 16 10 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 11 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 12 N -0.93 -58.32 13.29 21.45 0.28 -58.04 16 13 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 14 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 15 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 16 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 17 C 0.45 12.59 6.20 26.44 0.16 12.75 16 18 O -0.45 -15.01 17.06 14.38 0.25 -14.76 16 19 C -0.15 -3.41 6.88 22.99 0.16 -3.26 16 20 C -0.09 -1.59 10.61 22.69 0.24 -1.35 16 21 C -0.24 -2.44 10.86 22.05 0.24 -2.20 16 22 C 0.03 0.32 12.06 67.14 0.81 1.13 16 23 O -0.17 -3.05 10.47 -5.39 -0.06 -3.11 16 24 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 27 H 0.12 4.43 8.14 -2.38 -0.02 4.41 16 28 H 0.11 4.37 8.14 -2.39 -0.02 4.35 16 29 H -0.01 -0.53 8.10 -2.38 -0.02 -0.55 16 30 H -0.01 -0.38 8.10 -2.39 -0.02 -0.40 16 31 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 32 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 33 H 0.19 0.70 8.06 -2.91 -0.02 0.68 16 34 H 0.26 -0.21 8.06 -2.91 -0.02 -0.23 16 Total: -1.00 -77.05 312.01 7.45 -69.61 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: 1.10 Total: 4.86 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: 3.94 Total: -6.96 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: 0.28 Total: -58.04 kcal Atomic # 8 Polarization: -55.79 SS G_CDS: 0.09 Total: -55.70 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -77.05 7.45 -69.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837739039.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.310 kcal (2) G-P(sol) polarization free energy of solvation -77.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds