Wall clock time and date at job start Mon Mar 30 2020 01:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42902 * 109.47249 * 2 1 4 4 C 1.42898 * 113.99729 * 179.97438 * 3 2 1 5 5 C 1.50705 * 109.47025 * 179.97438 * 4 3 2 6 6 O 1.20835 * 119.99757 * 0.02562 * 5 4 3 7 7 O 1.34254 * 120.00184 * 179.97438 * 5 4 3 8 8 C 1.35922 * 117.00375 * 185.33870 * 7 5 4 9 9 C 1.38817 * 120.02463 * 246.47514 * 8 7 5 10 10 C 1.38194 * 120.08482 * 179.74189 * 9 8 7 11 11 C 1.38153 * 120.12051 * 0.50611 * 10 9 8 12 12 C 1.38899 * 120.04028 * 359.76957 * 11 10 9 13 13 O 1.35753 * 120.04104 * 179.97438 * 12 11 10 14 14 C 1.34826 * 116.99922 * 185.96753 * 13 12 11 15 15 H 1.08001 * 120.00401 * 354.89598 * 14 13 12 16 16 C 1.38658 * 119.99888 * 174.90274 * 14 13 12 17 17 N 1.31551 * 119.99982 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99943 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47268 * 89.99692 * 18 16 14 20 20 H 1.48500 * 109.47126 * 209.99979 * 18 16 14 21 21 H 1.48508 * 109.46902 * 329.99846 * 18 16 14 22 22 C 1.38577 * 120.01655 * 66.74292 * 8 7 5 23 23 H 1.09008 * 109.47232 * 59.99382 * 1 2 3 24 24 H 1.08997 * 109.47405 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46911 * 300.00448 * 1 2 3 26 26 H 1.09003 * 109.47107 * 240.00279 * 2 1 3 27 27 H 1.08998 * 109.47001 * 120.00090 * 2 1 3 28 28 H 1.09001 * 109.46816 * 60.01157 * 4 3 2 29 29 H 1.08993 * 109.47344 * 300.00428 * 4 3 2 30 30 H 1.07998 * 119.96094 * 359.97438 * 9 8 7 31 31 H 1.07996 * 119.94582 * 180.22992 * 10 9 8 32 32 H 1.08004 * 119.98229 * 179.74841 * 11 10 9 33 33 H 0.97000 * 120.00267 * 180.02562 * 17 16 14 34 34 H 1.07996 * 120.06201 * 359.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8196 2.9161 -0.0001 6 8 2.9643 3.7697 -0.0005 7 8 5.1160 3.2648 0.0008 8 6 5.3987 4.5896 0.1128 9 6 5.9865 5.2664 -0.9471 10 6 6.2696 6.6146 -0.8365 11 6 5.9780 7.2906 0.3325 12 6 5.3950 6.6171 1.3983 13 8 5.1090 7.2812 2.5472 14 6 4.6597 6.5455 3.5839 15 1 4.4635 5.4915 3.4532 16 6 4.4493 7.1421 4.8177 17 7 4.6876 8.4260 4.9768 18 14 3.8260 6.1229 6.2538 19 1 4.9804 5.5613 7.0002 20 1 3.0221 6.9828 7.1591 21 1 2.9798 5.0142 5.7436 22 6 5.1052 5.2642 1.2872 23 1 -0.3634 0.5140 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8339 0.9765 -0.8893 29 1 3.8333 0.9766 0.8907 30 1 6.2196 4.7397 -1.8606 31 1 6.7235 7.1397 -1.6638 32 1 6.2039 8.3433 0.4180 33 1 4.5408 8.8433 5.8400 34 1 4.6514 4.7384 2.1142 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841343122.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:31 Heat of formation + Delta-G solvation = -141.387669 kcal Electronic energy + Delta-G solvation = -19545.005031 eV Core-core repulsion = 16215.930044 eV Total energy + Delta-G solvation = -3329.074987 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.42475 -40.63032 -39.33163 -38.31717 -37.36127 -34.37041 -32.62961 -31.50593 -30.74712 -29.13745 -27.44933 -24.50629 -23.71457 -23.38859 -22.07420 -20.16422 -19.60701 -18.53940 -18.04340 -17.85354 -17.32033 -16.92806 -16.83646 -16.10897 -15.90493 -15.66901 -15.40858 -14.74821 -14.63865 -14.19611 -13.97728 -13.73756 -13.32641 -13.24725 -13.01674 -12.78296 -12.53738 -12.38530 -12.26534 -12.20911 -11.99766 -11.74840 -11.45246 -10.87697 -10.75439 -9.82138 -9.18067 -8.55361 -6.24989 0.06759 0.52483 0.97181 1.28722 1.34284 1.40687 1.46405 2.11508 2.67751 2.90392 3.03746 3.34581 3.52318 3.95788 4.06368 4.10555 4.16333 4.21401 4.29146 4.30539 4.49774 4.50088 4.70035 4.82298 4.91629 4.98963 5.01626 5.25687 5.29849 5.40474 5.47887 5.51825 5.91576 5.94029 6.05748 6.67581 6.88184 7.63240 8.67034 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.014132 B = 0.005799 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.901228 B = 4827.105970 C = 6506.428699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.050 3.950 3 O -0.409 6.409 4 C 0.085 3.915 5 C 0.446 3.554 6 O -0.516 6.516 7 O -0.285 6.285 8 C 0.112 3.888 9 C -0.188 4.188 10 C -0.046 4.046 11 C -0.196 4.196 12 C 0.127 3.873 13 O -0.221 6.221 14 C -0.420 4.420 15 H 0.090 0.910 16 C -0.015 4.015 17 N -0.912 5.912 18 Si 1.015 2.985 19 H -0.256 1.256 20 H -0.264 1.264 21 H -0.262 1.262 22 C -0.254 4.254 23 H 0.055 0.945 24 H 0.101 0.899 25 H 0.048 0.952 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.138 0.862 29 H 0.124 0.876 30 H 0.161 0.839 31 H 0.178 0.822 32 H 0.132 0.868 33 H 0.276 0.724 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.019 -18.401 -11.021 21.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.025 4.025 3 O -0.330 6.330 4 C 0.008 3.992 5 C 0.290 3.710 6 O -0.401 6.401 7 O -0.201 6.201 8 C 0.071 3.929 9 C -0.207 4.207 10 C -0.064 4.064 11 C -0.215 4.215 12 C 0.076 3.924 13 O -0.127 6.127 14 C -0.496 4.496 15 H 0.107 0.893 16 C -0.214 4.214 17 N -0.549 5.549 18 Si 0.834 3.166 19 H -0.180 1.180 20 H -0.188 1.188 21 H -0.186 1.186 22 C -0.274 4.274 23 H 0.074 0.926 24 H 0.120 0.880 25 H 0.067 0.933 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.156 0.844 29 H 0.142 0.858 30 H 0.179 0.821 31 H 0.196 0.804 32 H 0.149 0.851 33 H 0.085 0.915 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.419 -17.572 -10.814 20.682 hybrid contribution -0.327 -0.015 1.039 1.090 sum -1.746 -17.587 -9.775 20.197 Atomic orbital electron populations 1.21810 0.93335 1.03687 1.02317 1.22866 0.96073 0.80995 1.02530 1.87963 1.18957 1.30033 1.95997 1.21878 0.83741 0.86042 1.07517 1.24780 0.80013 0.94073 0.72123 1.90747 1.51284 1.53849 1.44238 1.84478 1.28131 1.24434 1.83039 1.18447 0.99464 0.81310 0.93643 1.21065 1.06676 0.94840 0.98089 1.21106 0.96040 0.92933 0.96299 1.20736 1.06062 1.01342 0.93335 1.19715 0.93412 0.90770 0.88477 1.83950 1.74262 1.36099 1.18385 1.21688 1.45667 0.94065 0.88189 0.89288 1.26543 0.96694 0.97671 1.00459 1.70151 1.46942 1.11801 1.26044 0.84655 0.78819 0.77365 0.75777 1.18007 1.18809 1.18605 1.21186 1.10967 0.95620 0.99584 0.92632 0.88034 0.93255 0.90297 0.91135 0.84438 0.85801 0.82116 0.80432 0.85056 0.91460 0.87362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 10.28 71.98 0.74 -1.57 16 2 C 0.05 0.76 6.66 71.98 0.48 1.24 16 3 O -0.41 -10.36 9.88 -129.90 -1.28 -11.65 16 4 C 0.08 1.76 6.53 71.24 0.47 2.23 16 5 C 0.45 15.06 7.80 71.24 0.56 15.61 16 6 O -0.52 -23.01 15.82 28.37 0.45 -22.56 16 7 O -0.29 -9.80 10.04 4.66 0.05 -9.75 16 8 C 0.11 4.56 5.34 22.49 0.12 4.68 16 9 C -0.19 -6.28 9.98 22.40 0.22 -6.06 16 10 C -0.05 -1.51 10.03 22.24 0.22 -1.28 16 11 C -0.20 -8.34 9.99 22.41 0.22 -8.11 16 12 C 0.13 6.70 6.64 22.56 0.15 6.85 16 13 O -0.22 -13.81 9.76 -22.73 -0.22 -14.04 16 14 C -0.42 -25.84 9.49 67.92 0.64 -25.19 16 15 H 0.09 5.24 5.21 -2.91 -0.02 5.23 16 16 C -0.02 -0.88 5.49 84.84 0.47 -0.42 16 17 N -0.91 -56.75 13.67 21.61 0.30 -56.45 16 18 Si 1.02 44.49 29.55 68.60 2.03 46.52 16 19 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 20 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 21 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 22 C -0.25 -12.50 8.30 22.49 0.19 -12.31 16 23 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 24 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.16 4.01 8.06 -2.91 -0.02 3.98 16 31 H 0.18 3.93 8.06 -2.91 -0.02 3.91 16 32 H 0.13 5.29 8.06 -2.91 -0.02 5.26 16 33 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 34 H 0.11 5.69 5.64 -2.91 -0.02 5.68 16 Total: -1.00 -82.87 306.89 6.90 -75.97 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 1.11 Total: 16.31 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: 4.48 Total: -24.35 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 0.30 Total: -56.45 kcal Atomic # 8 Polarization: -56.99 SS G_CDS: -1.01 Total: -58.00 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -82.87 6.90 -75.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841343122.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.417 kcal (2) G-P(sol) polarization free energy of solvation -82.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds